Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:13:04 (620802): wrapper (7.7.26015): starting
16:13:04 (620802): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:13:04] Arguments: --nthreads 8
[2025-11-26 16:13:04] Threads: 8
[2025-11-26 16:13:04] Checking for CVMFS
[2025-11-26 16:13:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:13:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:13:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:13:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:13:05] 2.13.3.0 11338 30440 249120 153334 3 721 20987241 32935936 43179 16776704 0 155550835 99.533 182306619 38369 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:13:05] CVMFS is ok
[2025-11-26 16:13:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:13:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:13:05] Further information can be found at the LHC@home message board.
[2025-11-26 16:13:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:13:05] Checking for apptainer binary...
[2025-11-26 16:13:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:13:05] Running /usr/bin/apptainer --version
[2025-11-26 16:13:05] apptainer version 1.4.4-1.el9
[2025-11-26 16:13:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:13:05] c7-3-17.aglt2.org
[2025-11-26 16:13:05] apptainer works
[2025-11-26 16:13:06] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:13:06] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:13:06] Starting ATLAS job with PandaID=6897863846
[2025-11-26 16:13:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:12:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:12:09] 2025-11-27 10:11:09,985 | INFO     | sum of square deviations: 138282443343.59592
[2025-11-27 05:12:09] 2025-11-27 10:11:10,010 | INFO     | time since job start (46656s) is within the limit (172800.0s)
[2025-11-27 05:12:09] 2025-11-27 10:11:10,088 | INFO     | sum of deviations: 1063028768063.0453
[2025-11-27 05:12:09] 2025-11-27 10:11:10,088 | INFO     | mean x: 1764214956.5667539
[2025-11-27 05:12:09] 2025-11-27 10:11:10,088 | INFO     | mean y: 2835115.8128272253
[2025-11-27 05:12:09] 2025-11-27 10:11:10,089 | INFO     | intersect: -13559343903.671562
[2025-11-27 05:12:09] 2025-11-27 10:11:10,089 | INFO     | chi2: 9.47463283309624
[2025-11-27 05:12:09] 2025-11-27 10:11:10,110 | INFO     | sum of square deviations: 135585506457.86827
[2025-11-27 05:12:09] 2025-11-27 10:11:10,163 | INFO     | sum of deviations: 1327325388902.0278
[2025-11-27 05:12:09] 2025-11-27 10:11:10,163 | INFO     | mean x: 1764214804.0737813
[2025-11-27 05:12:09] 2025-11-27 10:11:10,163 | INFO     | mean y: 2850060.4637681157
[2025-11-27 05:12:09] 2025-11-27 10:11:10,163 | INFO     | intersect: -17268074849.578888
[2025-11-27 05:12:09] 2025-11-27 10:11:10,185 | INFO     | chi2: 5.952716312196265
[2025-11-27 05:12:09] 2025-11-27 10:11:10,185 | INFO     | current chi2=5.952716312196265 (change=37.17206337112526 %)
[2025-11-27 05:12:09] 2025-11-27 10:11:10,186 | INFO     | sum of square deviations: 132923826505.72559
[2025-11-27 05:12:09] 2025-11-27 10:11:10,262 | INFO     | sum of deviations: 1547156172897.3938
[2025-11-27 05:12:09] 2025-11-27 10:11:10,262 | INFO     | mean x: 1764214651.5795755
[2025-11-27 05:12:09] 2025-11-27 10:11:10,262 | INFO     | mean y: 2862643.1684350134
[2025-11-27 05:12:09] 2025-11-27 10:11:10,262 | INFO     | intersect: -20531571703.63239
[2025-11-27 05:12:09] 2025-11-27 10:11:10,263 | INFO     | chi2: 3.2764544345981435
[2025-11-27 05:12:09] 2025-11-27 10:11:10,263 | INFO     | current chi2=3.2764544345981435 (change=44.95866655218968 %)
[2025-11-27 05:12:09] 2025-11-27 10:11:10,264 | INFO     | sum of square deviations: 130297170863.70062
[2025-11-27 05:12:09] 2025-11-27 10:11:10,348 | INFO     | sum of deviations: 1603879049079.1873
[2025-11-27 05:12:09] 2025-11-27 10:11:10,348 | INFO     | mean x: 1764214499.0841122
[2025-11-27 05:12:09] 2025-11-27 10:11:10,348 | INFO     | mean y: 2865925.108144192
[2025-11-27 05:12:09] 2025-11-27 10:11:10,348 | INFO     | intersect: -21713543221.815495
[2025-11-27 05:12:09] 2025-11-27 10:11:10,373 | INFO     | chi2: 2.876768485145574
[2025-11-27 05:12:09] 2025-11-27 10:11:10,373 | INFO     | current chi2=2.876768485145574 (change=12.198733644272112 %)
[2025-11-27 05:12:09] 2025-11-27 10:11:10,373 | INFO     | right removable region: 748
[2025-11-27 05:12:09] 2025-11-27 10:11:10,374 | INFO     | sum of square deviations: 135585009307.86842
[2025-11-27 05:12:09] 2025-11-27 10:11:10,471 | INFO     | sum of deviations: 818602494075.7041
[2025-11-27 05:12:09] 2025-11-27 10:11:10,471 | INFO     | mean x: 1764215109.0737813
[2025-11-27 05:12:09] 2025-11-27 10:11:10,471 | INFO     | mean y: 2848924.1660079053
[2025-11-27 05:12:09] 2025-11-27 10:11:10,471 | INFO     | intersect: -10648703896.799332
[2025-11-27 05:12:09] 2025-11-27 10:11:10,472 | INFO     | chi2: 6.772164546024137
[2025-11-27 05:12:09] 2025-11-27 10:11:10,472 | INFO     | current chi2=6.772164546024137 (change=28.523198045543225 %)
[2025-11-27 05:12:09] 2025-11-27 10:11:10,473 | INFO     | sum of square deviations: 132923202478.63245
[2025-11-27 05:12:09] 2025-11-27 10:11:10,580 | INFO     | sum of deviations: 775547557971.7836
[2025-11-27 05:12:09] 2025-11-27 10:11:10,580 | INFO     | mean x: 1764215261.571618
[2025-11-27 05:12:09] 2025-11-27 10:11:10,677 | INFO     | mean y: 2851389.5132625992
[2025-11-27 05:12:09] 2025-11-27 10:11:10,677 | INFO     | intersect: -10290557227.905241
[2025-11-27 05:12:09] 2025-11-27 10:11:10,678 | INFO     | chi2: 6.746941367713063
[2025-11-27 05:12:09] 2025-11-27 10:11:10,678 | INFO     | current chi2=6.746941367713063 (change=0.37245371313197273 %)
[2025-11-27 05:12:09] 2025-11-27 10:11:10,678 | INFO     | left removable region: 20
[2025-11-27 05:12:09] 2025-11-27 10:11:10,678 | INFO     | sum of square deviations: 119642293226.8887
[2025-11-27 05:12:09] 2025-11-27 10:11:10,813 | INFO     | sum of deviations: 1253115957375.1196
[2025-11-27 05:12:09] 2025-11-27 10:11:10,813 | INFO     | mean x: 1764215078.5837913
[2025-11-27 05:12:09] 2025-11-27 10:11:10,817 | INFO     | mean y: 2885959.8914835164
[2025-11-27 05:12:09] 2025-11-27 10:11:10,818 | INFO     | intersect: -18475245874.498135
[2025-11-27 05:12:09] 2025-11-27 10:11:10,818 | INFO     | chi2: 0.0763882455591105
[2025-11-27 05:12:09] 2025-11-27 10:11:10,818 | INFO     | current memory leak: 10.47 B/s (using 728 data points, chi2=0.08)
[2025-11-27 05:12:09] 2025-11-27 10:11:10,819 | INFO     | could have reported an average CPU frequency of 3079 MHz (29 samples)
[2025-11-27 05:12:09] 2025-11-27 10:11:10,819 | INFO     | ..............................
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | . Timing measurements:
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | . get job = 0 s
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | . initial setup = 4 s
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | . payload setup = 18 s
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | . stage-in = 0 s
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | . payload execution = 46572 s
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | . stage-out = 11 s
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | . log creation = 1 s
[2025-11-27 05:12:09] 2025-11-27 10:11:10,820 | INFO     | ..............................
[2025-11-27 05:12:09] 2025-11-27 10:11:11,312 | INFO     | 
[2025-11-27 05:12:09] 2025-11-27 10:11:11,312 | INFO     | job summary report
[2025-11-27 05:12:09] 2025-11-27 10:11:11,312 | INFO     | --------------------------------------------------
[2025-11-27 05:12:09] 2025-11-27 10:11:11,312 | INFO     | PanDA job id: 6897863846
[2025-11-27 05:12:09] 2025-11-27 10:11:11,312 | INFO     | task id: 47556161
[2025-11-27 05:12:09] 2025-11-27 10:11:11,312 | INFO     | errors: (none)
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | pilot state: finished 
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | transexitcode: 0
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | exeerrorcode: 0
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | exeerrordiag: 
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | exitcode: 0
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | exitmsg: OK
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | cpuconsumptiontime: 201901 s
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | nevents: 1000
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | neventsw: 0
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | pid: 645671
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | pgrp: 645671
[2025-11-27 05:12:09] 2025-11-27 10:11:11,313 | INFO     | corecount: 8
[2025-11-27 05:12:09] 2025-11-27 10:11:11,314 | INFO     | event service: False
[2025-11-27 05:12:09] 2025-11-27 10:11:11,314 | INFO     | sizes: {0: 2284094, 1: 2284293, 2: 2284293, 13: 2284293, 14: 2284611, 24: 2284639, 46592: 2330137, 46605: 2339131, 46606: 2339187, 46620: 2339433}
[2025-11-27 05:12:09] 2025-11-27 10:11:11,314 | INFO     | --------------------------------------------------
[2025-11-27 05:12:09] 2025-11-27 10:11:11,314 | INFO     | 
[2025-11-27 05:12:09] 2025-11-27 10:11:11,314 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 05:12:09] 2025-11-27 10:11:11,373 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,373 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,374 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,374 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,374 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,374 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,374 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,374 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,374 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,374 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,375 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,375 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,375 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,375 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,375 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,375 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:12:09] 2025-11-27 10:11:11,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,376 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:12:09] 2025-11-27 10:11:11,376 | INFO     | job 6897863846 has completed (purged errors)
[2025-11-27 05:12:09] 2025-11-27 10:11:11,376 | INFO     | overall cleanup function is called
[2025-11-27 05:12:09] 2025-11-27 10:11:12,395 | INFO     | --- collectZombieJob: --- 10, [645671]
[2025-11-27 05:12:09] 2025-11-27 10:11:12,396 | INFO     | zombie collector waiting for pid 645671
[2025-11-27 05:12:09] 2025-11-27 10:11:12,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:12:09] 2025-11-27 10:11:12,402 | INFO     | collected zombie processes
[2025-11-27 05:12:09] 2025-11-27 10:11:12,402 | INFO     | will attempt to kill all subprocesses of pid=645671
[2025-11-27 05:12:09] 2025-11-27 10:11:16,879 | INFO     | process IDs to be killed: [645671] (in reverse order)
[2025-11-27 05:12:09] 2025-11-27 10:11:17,167 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:12:09] 2025-11-27 10:11:17,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:12:09] 2025-11-27 10:11:17,217 | INFO     | did not find any defunct processes belonging to 645671
[2025-11-27 05:12:09] 2025-11-27 10:11:17,488 | INFO     | did not find any defunct processes belonging to 645671
[2025-11-27 05:12:09] 2025-11-27 10:11:17,499 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:12:09] 2025-11-27 10:11:17,500 | INFO     | ready for new job
[2025-11-27 05:12:09] 2025-11-27 10:11:17,500 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:12:09] 2025-11-27 10:11:17,568 | INFO     | ***************************************
[2025-11-27 05:12:09] 2025-11-27 10:11:17,568 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:12:09] 2025-11-27 10:11:17,568 | INFO     | ***************************************
[2025-11-27 05:12:09] 2025-11-27 10:11:17,568 | INFO     | 
[2025-11-27 05:12:09] 2025-11-27 10:11:17,623 | INFO     | architecture information:
[2025-11-27 05:12:09] 2025-11-27 10:11:17,647 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:12:09] 2025-11-27 10:11:17,736 | INFO     | cat /etc/os-release:
[2025-11-27 05:12:09] NAME="CentOS Linux"
[2025-11-27 05:12:09] VERSION="7 (Core)"
[2025-11-27 05:12:09] ID="centos"
[2025-11-27 05:12:09] ID_LIKE="rhel fedora"
[2025-11-27 05:12:09] VERSION_ID="7"
[2025-11-27 05:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:12:09] ANSI_COLOR="0;31"
[2025-11-27 05:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:12:09] HOME_URL="https://www.centos.org/"
[2025-11-27 05:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:12:09] 
[2025-11-27 05:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:12:09] 
[2025-11-27 05:12:09] 2025-11-27 10:11:17,736 | INFO     | ***************************************
[2025-11-27 05:12:09] 2025-11-27 10:11:18,240 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 05:12:09] 2025-11-27 10:11:18,376 | INFO     | sufficient remaining disk space (66471329792 B)
[2025-11-27 05:12:09] 2025-11-27 10:11:18,376 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:12:09] 2025-11-27 10:11:18,376 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:12:09] 2025-11-27 10:11:18,376 | INFO     | update_server=False
[2025-11-27 05:12:09] 2025-11-27 10:11:18,376 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:12:09] 2025-11-27 10:11:18,435 | INFO     | all job control threads have been joined
[2025-11-27 05:12:09] 2025-11-27 10:11:18,634 | INFO     | all payload control threads have been joined
[2025-11-27 05:12:09] 2025-11-27 10:11:18,833 | INFO     | all data control threads have been joined
[2025-11-27 05:12:09] 2025-11-27 10:11:18,865 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 05:12:09] 2025-11-27 10:11:18,894 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 05:12:09] 2025-11-27 10:11:18,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:12:09] 2025-11-27 10:11:18,894 | INFO     | will abort loop
[2025-11-27 05:12:09] 2025-11-27 10:11:19,383 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,442 | INFO     | [job] control thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,651 | INFO     | [payload] control thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,733 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,734 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,740 | INFO     | [job] validate thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,741 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,752 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:12:09] 2025-11-27 10:11:19,898 | INFO     | [data] control thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:19,899 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:20,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:12:09] 2025-11-27 10:11:20,105 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:20,569 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:21,086 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:21,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:12:09] 2025-11-27 10:11:21,847 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:25,175 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:12:09] 2025-11-27 10:11:48,848 | INFO     | PID=627650 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 05:12:09] 2025-11-27 10:11:48,848 | INFO     | .. there are 68 such processes running
[2025-11-27 05:12:09] 2025-11-27 10:11:48,849 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:12:09] 2025-11-27 10:11:48,850 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:12:09] 2025-11-27 10:11:48,850 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:12:09] 2025-11-27 10:12:01,397 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:12:09] 2025-11-27 10:12:02,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648952526656)>', '<ExcThread(monitor, started 140648585860864)>']
[2025-11-27 05:12:09] 2025-11-27 10:12:02,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:12:09] 2025-11-27 10:12:02,989 | INFO     | [monitor] control thread has ended
[2025-11-27 05:12:09] 2025-11-27 10:12:07,243 | INFO     | all workflow threads have been joined
[2025-11-27 05:12:09] 2025-11-27 10:12:07,244 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:12:09] 2025-11-27 10:12:07,244 | INFO     | traces error code: 0
[2025-11-27 05:12:09] 2025-11-27 10:12:07,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:12:09] 2025-11-27 10:12:07,714 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:12:09] 2025-11-27 10:12:07,740 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:12:09] 2025-11-27 10:12:07,783 [wrapper] pilotpid: 627650
[2025-11-27 05:12:09] 2025-11-27 10:12:07,803 [wrapper] Pilot exit status: 0
[2025-11-27 05:12:09] 2025-11-27 10:12:07,943 [wrapper] pandaids: 6897863846
[2025-11-27 05:12:09] 2025-11-27 10:12:08,310 [wrapper] cleanup supervisor_pilot 1429703 627651
[2025-11-27 05:12:09] 2025-11-27 10:12:08,314 [wrapper] Test setup, not cleaning
[2025-11-27 05:12:09] 2025-11-27 10:12:08,318 [wrapper] apfmon messages muted
[2025-11-27 05:12:09] 2025-11-27 10:12:08,322 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:12:09] 2025-11-27 10:12:08,326 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:12:09]  *** Error codes and diagnostics ***
[2025-11-27 05:12:09]     "exeErrorCode": 0,
[2025-11-27 05:12:09]     "exeErrorDiag": "",
[2025-11-27 05:12:09]     "pilotErrorCode": 0,
[2025-11-27 05:12:09]     "pilotErrorDiag": "",
[2025-11-27 05:12:09]  *** Listing of results directory ***
[2025-11-27 05:12:09] total 1304180
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 05:12:09] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:12:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:13 run_atlas
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:13 job.xml
[2025-11-27 05:12:09] -rw-r--r--. 2 boincer umatlas 408761358 Nov 26 16:13 EVNT.47483658._002334.pool.root.1
[2025-11-27 05:12:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:13 start_atlas.sh
[2025-11-27 05:12:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:13 shared
[2025-11-27 05:12:09] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 16:13 input.tar.gz
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:13 boinc_lockfile
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 16:13 pandaJob.out
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas        57 Nov 26 16:13 setup.sh.local
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas    991538 Nov 26 16:13 agis_schedconf.cvmfs.json
[2025-11-27 05:12:09] drwx------. 5 boincer umatlas      4096 Nov 26 16:13 pilot3
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas       533 Nov 27 04:56 boinc_task_state.xml
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas 908866875 Nov 27 05:10 HITS.47556161._003166.pool.root.1
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas      1061 Nov 27 05:10 memory_monitor_summary.json
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas   1901549 Nov 27 05:10 log.47556161._003166.job.log.tgz.1
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 05:10 init_data.xml
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas        95 Nov 27 05:11 pilot_heartbeat.json
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas      8620 Nov 27 05:11 heartbeat.json
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas      5009 Nov 27 05:12 pilotlog.txt
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:12 boinc_mmap_file
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas        29 Nov 27 05:12 wrapper_checkpoint.txt
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas   5062505 Nov 27 05:12 log.47556161._003166.job.log.1
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas       353 Nov 27 05:12 output.list
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:12 runtime_log
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas   6983680 Nov 27 05:12 result.tar.gz
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas       663 Nov 27 05:12 vQYKDmYbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmldMKDmrR2Zcn.diag
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 05:12 runtime_log.err
[2025-11-27 05:12:09] -rw-r--r--. 1 boincer umatlas     21218 Nov 27 05:12 stderr.txt
[2025-11-27 05:12:09] HITS file was successfully produced:
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas 908866875 Nov 27 05:10 shared/HITS.pool.root.1
[2025-11-27 05:12:09]  *** Contents of shared directory: ***
[2025-11-27 05:12:09] total 1294176
[2025-11-27 05:12:09] -rw-r--r--. 2 boincer umatlas 408761358 Nov 26 16:13 ATLAS.root_0
[2025-11-27 05:12:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:13 start_atlas.sh
[2025-11-27 05:12:09] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 16:13 input.tar.gz
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas 908866875 Nov 27 05:10 HITS.pool.root.1
[2025-11-27 05:12:09] -rw-------. 1 boincer umatlas   6983680 Nov 27 05:12 result.tar.gz
05:12:11 (620802): run_atlas exited; CPU time 202500.110300
05:12:11 (620802): called boinc_finish(0)

</stderr_txt>
]]>

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