Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:06:28 (831911): wrapper (7.7.26015): starting
11:06:28 (831911): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:06:28] Arguments: --nthreads 8
[2025-11-26 11:06:28] Threads: 8
[2025-11-26 11:06:28] Checking for CVMFS
[2025-11-26 11:06:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:06:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:06:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:06:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:06:28] 2.11.3.0 1855 95118 146548 153331 0 486 30165237 45568001 23126 130560 0 623824079 99.843 292948513 19989 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 11:06:28] CVMFS is ok
[2025-11-26 11:06:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:06:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:06:28] Further information can be found at the LHC@home message board.
[2025-11-26 11:06:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:06:28] Checking for apptainer binary...
[2025-11-26 11:06:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:06:28] Running /usr/bin/apptainer --version
[2025-11-26 11:06:28] apptainer version 1.4.1-1.el9
[2025-11-26 11:06:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:06:29] wns0009.triumf.lcg
[2025-11-26 11:06:29] apptainer works
[2025-11-26 11:06:29] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:06:29] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:06:29] Starting ATLAS job with PandaID=6898214537
[2025-11-26 11:06:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:14:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | ..............................
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . Timing measurements:
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . get job = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . initial setup = 3 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . payload setup = 12 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . stage-in = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . payload execution = 232 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . stage-out = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . log creation = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | ..............................
[2025-11-26 11:14:09] 2025-11-26 19:13:34,058 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 11:14:09] 2025-11-26 19:13:34,058 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898214537/pilotlog.txt
[2025-11-26 11:14:09] 2025-11-26 19:13:34,107 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 11:14:09] - Log from pilotlog.txt -
[2025-11-26 11:14:09] 2025-11-26 19:13:34,048 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898214537/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,049 | INFO     | extracted standard info from prmon json
[2025-11-26 11:14:09] 2025-11-26 19:13:34,049 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:14:09] 2025-11-26 19:13:34,049 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:14:09] 2025-11-26 19:13:34,055 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 11:14:09] 2025-11-26 19:13:34,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 11:14:09] 2025-11-26 19:13:34,056 | WARNING  | wrong length of table data, x=[1764184055.0, 1764184116.0, 1764184177.0, 1764184238.0], y=[970.0, 611226.0, 893082.0, 540040.0] (must be same and length>=4)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | ..............................
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . Timing measurements:
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . get job = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . initial setup = 3 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . payload setup = 12 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . stage-in = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . payload execution = 232 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . stage-out = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . log creation = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | ..............................
[2025-11-26 11:14:09] 2025-11-26 19:13:34,058 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 11:14:09] 2025-11-26 19:13:34,058 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898214537/pilotlog.txt
[2025-11-26 11:14:09] 2025-11-26 19:13:34,108 | WARNING  | 
[2025-11-26 11:14:09] [begin log extracts]
[2025-11-26 11:14:09] - Log from pilotlog.txt -
[2025-11-26 11:14:09] 2025-11-26 19:13:34,048 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898214537/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,049 | INFO     | extracted standard info from prmon json
[2025-11-26 11:14:09] 2025-11-26 19:13:34,049 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:14:09] 2025-11-26 19:13:34,049 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:14:09] 2025-11-26 19:13:34,055 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 11:14:09] 2025-11-26 19:13:34,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 11:14:09] 2025-11-26 19:13:34,056 | WARNING  | wrong length of table data, x=[1764184055.0, 1764184116.0, 1764184177.0, 1764184238.0], y=[970.0, 611226.0, 893082.0, 540040.0] (must be same and length>=4)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | ..............................
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . Timing measurements:
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . get job = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . initial setup = 3 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . payload setup = 12 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . stage-in = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . payload execution = 232 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . stage-out = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | . log creation = 0 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,057 | INFO     | ..............................
[2025-11-26 11:14:09] 2025-11-26 19:13:34,058 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 11:14:09] 2025-11-26 19:13:34,058 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898214537/pilotlog.txt
[2025-11-26 11:14:09] [end log extracts]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,108 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,108 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 11:14:09] 2025-11-26 19:13:34,165 | INFO     | time since job start (406s) is within the limit (172800.0s)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,476 | INFO     | 
[2025-11-26 11:14:09] 2025-11-26 19:13:34,489 | INFO     | job summary report
[2025-11-26 11:14:09] 2025-11-26 19:13:34,489 | INFO     | --------------------------------------------------
[2025-11-26 11:14:09] 2025-11-26 19:13:34,489 | INFO     | PanDA job id: 6898214537
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | task id: 47556161
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 11:11:09,957 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | pilot state: failed 
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | transexitcode: 65
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | exeerrorcode: 65
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | exitcode: 65
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | cpuconsumptiontime: 50 s
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | nevents: 0
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | neventsw: 0
[2025-11-26 11:14:09] 2025-11-26 19:13:34,490 | INFO     | pid: 842286
[2025-11-26 11:14:09] 2025-11-26 19:13:34,491 | INFO     | pgrp: 842286
[2025-11-26 11:14:09] 2025-11-26 19:13:34,491 | INFO     | corecount: 8
[2025-11-26 11:14:09] 2025-11-26 19:13:34,491 | INFO     | event service: False
[2025-11-26 11:14:09] 2025-11-26 19:13:34,491 | INFO     | sizes: {0: 2284261, 1: 2284289, 11: 2284551, 12: 2284579, 248: 2310050, 249: 2314472, 252: 2314472, 384: 2314666}
[2025-11-26 11:14:09] 2025-11-26 19:13:34,491 | INFO     | --------------------------------------------------
[2025-11-26 11:14:09] 2025-11-26 19:13:34,491 | INFO     | 
[2025-11-26 11:14:09] 2025-11-26 19:13:34,491 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 11:14:09] 2025-11-26 19:13:34,641 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,642 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | job 6898214537 has completed (purged errors)
[2025-11-26 11:14:09] 2025-11-26 19:13:34,643 | INFO     | overall cleanup function is called
[2025-11-26 11:14:09] 2025-11-26 19:13:35,684 | INFO     | --- collectZombieJob: --- 10, [842286]
[2025-11-26 11:14:09] 2025-11-26 19:13:35,684 | INFO     | zombie collector waiting for pid 842286
[2025-11-26 11:14:09] 2025-11-26 19:13:35,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:14:09] 2025-11-26 19:13:35,685 | INFO     | collected zombie processes
[2025-11-26 11:14:09] 2025-11-26 19:13:35,685 | INFO     | will attempt to kill all subprocesses of pid=842286
[2025-11-26 11:14:09] 2025-11-26 19:13:36,919 | INFO     | process IDs to be killed: [842286] (in reverse order)
[2025-11-26 11:14:09] 2025-11-26 19:13:37,578 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:14:09] 2025-11-26 19:13:37,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:14:09] 2025-11-26 19:13:37,597 | INFO     | did not find any defunct processes belonging to 842286
[2025-11-26 11:14:09] 2025-11-26 19:13:37,661 | INFO     | did not find any defunct processes belonging to 842286
[2025-11-26 11:14:09] 2025-11-26 19:13:37,662 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:14:09] 2025-11-26 19:13:37,662 | INFO     | ready for new job
[2025-11-26 11:14:09] 2025-11-26 19:13:37,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:14:09] 2025-11-26 19:13:37,664 | INFO     | ***************************************
[2025-11-26 11:14:09] 2025-11-26 19:13:37,664 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:14:09] 2025-11-26 19:13:37,664 | INFO     | ***************************************
[2025-11-26 11:14:09] 2025-11-26 19:13:37,664 | INFO     | 
[2025-11-26 11:14:09] 2025-11-26 19:13:37,666 | INFO     | architecture information:
[2025-11-26 11:14:09] 2025-11-26 19:13:37,699 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:14:09] 2025-11-26 19:13:37,714 | INFO     | cat /etc/os-release:
[2025-11-26 11:14:09] NAME="CentOS Linux"
[2025-11-26 11:14:09] VERSION="7 (Core)"
[2025-11-26 11:14:09] ID="centos"
[2025-11-26 11:14:09] ID_LIKE="rhel fedora"
[2025-11-26 11:14:09] VERSION_ID="7"
[2025-11-26 11:14:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:14:09] ANSI_COLOR="0;31"
[2025-11-26 11:14:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:14:09] HOME_URL="https://www.centos.org/"
[2025-11-26 11:14:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:14:09] 
[2025-11-26 11:14:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:14:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:14:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:14:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:14:09] 
[2025-11-26 11:14:09] 2025-11-26 19:13:37,714 | INFO     | ***************************************
[2025-11-26 11:14:09] 2025-11-26 19:13:38,218 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 11:14:09] 2025-11-26 19:13:38,263 | INFO     | sufficient remaining disk space (783480258560 B)
[2025-11-26 11:14:09] 2025-11-26 19:13:38,264 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:14:09] 2025-11-26 19:13:38,264 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:14:09] 2025-11-26 19:13:38,264 | INFO     | update_server=False
[2025-11-26 11:14:09] 2025-11-26 19:13:38,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:14:09] 2025-11-26 19:13:38,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:14:09] 2025-11-26 19:13:38,395 | INFO     | all payload control threads have been joined
[2025-11-26 11:14:09] 2025-11-26 19:13:38,520 | INFO     | all data control threads have been joined
[2025-11-26 11:14:09] 2025-11-26 19:13:38,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:14:09] 2025-11-26 19:13:38,810 | INFO     | aborting loop
[2025-11-26 11:14:09] 2025-11-26 19:13:39,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:14:09] 2025-11-26 19:13:39,270 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:14:09] 2025-11-26 19:13:39,320 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,406 | INFO     | [payload] control thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,494 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,532 | INFO     | [data] control thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,606 | INFO     | all job control threads have been joined
[2025-11-26 11:14:09] 2025-11-26 19:13:39,655 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,769 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,823 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,896 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:39,943 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:40,183 | INFO     | [job] validate thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:40,272 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:40,289 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:40,612 | INFO     | [job] control thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:40,716 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:43,043 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:14:09] 2025-11-26 19:13:48,855 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:14:09] 2025-11-26 19:13:50,762 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140614284826432)>', '<ExcThread(monitor, started 140613955585792)>']
[2025-11-26 11:14:09] 2025-11-26 19:13:55,789 | INFO     | all workflow threads have been joined
[2025-11-26 11:14:09] 2025-11-26 19:13:55,789 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:14:09] 2025-11-26 19:13:55,790 | INFO     | traces error code: 0
[2025-11-26 11:14:09] 2025-11-26 19:13:55,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:14:09] 2025-11-26 19:14:08,286 | INFO     | PID=835634 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 11:14:09] 2025-11-26 19:14:08,286 | INFO     | .. there are 33 such processes running
[2025-11-26 11:14:09] 2025-11-26 19:14:08,287 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:14:09] 2025-11-26 19:14:08,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:14:09] 2025-11-26 19:14:08,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:14:09] 2025-11-26 19:14:08,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:14:09] 2025-11-26 19:14:08,287 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 11:14:09] 2025-11-26 19:14:08,288 | INFO     | [monitor] control thread has ended
[2025-11-26 11:14:09] 2025-11-26 19:14:08,774 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:14:09] 2025-11-26 19:14:08,822 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:14:09] 2025-11-26 19:14:08,851 [wrapper] pilotpid: 835634
[2025-11-26 11:14:09] 2025-11-26 19:14:08,909 [wrapper] Pilot exit status: 0
[2025-11-26 11:14:09] 2025-11-26 19:14:08,948 [wrapper] pandaids: 6898214537
[2025-11-26 11:14:09] 2025-11-26 19:14:08,994 [wrapper] cleanup supervisor_pilot  835640 835635
[2025-11-26 11:14:09] 2025-11-26 19:14:08,997 [wrapper] Test setup, not cleaning
[2025-11-26 11:14:09] 2025-11-26 19:14:08,999 [wrapper] apfmon messages muted
[2025-11-26 11:14:09] 2025-11-26 19:14:09,001 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:14:09] 2025-11-26 19:14:09,003 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:14:09]  *** Error codes and diagnostics ***
[2025-11-26 11:14:09]     "exeErrorCode": 65,
[2025-11-26 11:14:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 11:14:09]     "pilotErrorCode": 1305,
[2025-11-26 11:14:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 11:14:09]  *** Listing of results directory ***
[2025-11-26 11:14:09] total 405644
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc    576529 Nov 25 20:39 pilot3.tar.gz
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc      5112 Nov 25 20:42 queuedata.json
[2025-11-26 11:14:09] -rwx------. 1 boinc boinc     36292 Nov 25 20:43 runpilot2-wrapper.sh
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc       100 Nov 26 11:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:14:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 11:06 run_atlas
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc       105 Nov 26 11:06 job.xml
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc      6443 Nov 26 11:06 init_data.xml
[2025-11-26 11:14:09] -rw-r--r--. 2 boinc boinc 411125800 Nov 26 11:06 EVNT.47483658._002505.pool.root.1
[2025-11-26 11:14:09] -rw-r--r--. 2 boinc boinc     15847 Nov 26 11:06 start_atlas.sh
[2025-11-26 11:14:09] drwxrwx--x. 2 boinc boinc      4096 Nov 26 11:06 shared
[2025-11-26 11:14:09] -rw-r--r--. 2 boinc boinc    590107 Nov 26 11:06 input.tar.gz
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc         0 Nov 26 11:06 boinc_lockfile
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc      2785 Nov 26 11:06 pandaJob.out
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc    991522 Nov 26 11:06 agis_schedconf.cvmfs.json
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc   1516240 Nov 26 11:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:14:09] drwx------. 5 boinc boinc      4096 Nov 26 11:06 pilot3
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc       525 Nov 26 11:09 boinc_task_state.xml
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc      1013 Nov 26 11:11 memory_monitor_summary.json
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc     51238 Nov 26 11:11 log.47556161._004876.job.log.tgz.1
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc     10336 Nov 26 11:13 heartbeat.json
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc      8192 Nov 26 11:14 boinc_mmap_file
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc        23 Nov 26 11:14 wrapper_checkpoint.txt
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc       892 Nov 26 11:14 pilotlog.txt
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc        95 Nov 26 11:14 pilot_heartbeat.json
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc    117279 Nov 26 11:14 log.47556161._004876.job.log.1
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc       186 Nov 26 11:14 output.list
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc       620 Nov 26 11:14 runtime_log
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc    194560 Nov 26 11:14 result.tar.gz
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc      8634 Nov 26 11:14 runtime_log.err
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc       647 Nov 26 11:14 IxHLDmtYMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOzMKDmohMuVn.diag
[2025-11-26 11:14:09] -rw-r--r--. 1 boinc boinc     22501 Nov 26 11:14 stderr.txt
[2025-11-26 11:14:09] No HITS result produced
[2025-11-26 11:14:09]  *** Contents of shared directory: ***
[2025-11-26 11:14:09] total 402284
[2025-11-26 11:14:09] -rw-r--r--. 2 boinc boinc 411125800 Nov 26 11:06 ATLAS.root_0
[2025-11-26 11:14:09] -rw-r--r--. 2 boinc boinc     15847 Nov 26 11:06 start_atlas.sh
[2025-11-26 11:14:09] -rw-r--r--. 2 boinc boinc    590107 Nov 26 11:06 input.tar.gz
[2025-11-26 11:14:09] -rw-------. 1 boinc boinc    194560 Nov 26 11:14 result.tar.gz
11:14:11 (831911): run_atlas exited; CPU time 54.937970
11:14:11 (831911): called boinc_finish(0)

</stderr_txt>
]]>

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