Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:53:18 (27086): wrapper (7.7.26015): starting
13:53:18 (27086): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:53:18] Arguments: --nthreads 8
[2025-11-26 13:53:18] Threads: 8
[2025-11-26 13:53:18] Checking for CVMFS
[2025-11-26 13:53:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:53:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:53:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:53:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:53:18] 2.11.2.0 3838 142849 134772 153331 3 90 13317430 18432001 1885 130560 0 117858301 99.988 5079322 27192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 13:53:18] CVMFS is ok
[2025-11-26 13:53:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:53:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:53:18] Further information can be found at the LHC@home message board.
[2025-11-26 13:53:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:53:18] Checking for apptainer binary...
[2025-11-26 13:53:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:53:18] Running /usr/bin/apptainer --version
[2025-11-26 13:53:18] apptainer version 1.3.2-1.el7
[2025-11-26 13:53:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:53:19] c-206-4.aglt2.org
[2025-11-26 13:53:19] apptainer works
[2025-11-26 13:53:19] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:53:19] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:53:19] Starting ATLAS job with PandaID=6898214518
[2025-11-26 13:53:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:02:30]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:02:30] 2025-11-27 14:01:56,442 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,268 | INFO     | time since job start (68907s) is within the limit (172800.0s)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,282 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 09:02:30] 2025-11-27 14:01:57,286 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2494.5833333333335
[2025-11-27 09:02:30] 2025-11-27 14:01:57,288 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898214518/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,289 | INFO     | extracted standard info from prmon json
[2025-11-27 09:02:30] 2025-11-27 14:01:57,289 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:02:30] 2025-11-27 14:01:57,289 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:02:30] 2025-11-27 14:01:57,305 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:02:30] 2025-11-27 14:01:57,306 | INFO     | sum of square deviations: 446231646197.8301
[2025-11-27 09:02:30] 2025-11-27 14:01:57,344 | INFO     | sum of deviations: 2096215941064.8442
[2025-11-27 09:02:30] 2025-11-27 14:01:57,344 | INFO     | mean x: 1764217640.5863595
[2025-11-27 09:02:30] 2025-11-27 14:01:57,345 | INFO     | mean y: 2943961.119574845
[2025-11-27 09:02:30] 2025-11-27 14:01:57,345 | INFO     | intersect: -8284637552.239525
[2025-11-27 09:02:30] 2025-11-27 14:01:57,347 | INFO     | chi2: 6.19246438382402
[2025-11-27 09:02:30] 2025-11-27 14:01:57,348 | INFO     | sum of square deviations: 440329393251.1031
[2025-11-27 09:02:30] 2025-11-27 14:01:57,389 | INFO     | sum of deviations: 2414304677170.1733
[2025-11-27 09:02:30] 2025-11-27 14:01:57,389 | INFO     | mean x: 1764217488.088968
[2025-11-27 09:02:30] 2025-11-27 14:01:57,390 | INFO     | mean y: 2952175.078291815
[2025-11-27 09:02:30] 2025-11-27 14:01:57,390 | INFO     | intersect: -9670166627.167236
[2025-11-27 09:02:30] 2025-11-27 14:01:57,391 | INFO     | chi2: 3.888879945286399
[2025-11-27 09:02:30] 2025-11-27 14:01:57,392 | INFO     | current chi2=3.888879945286399 (change=37.199801173746806 %)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,393 | INFO     | sum of square deviations: 434479420354.3605
[2025-11-27 09:02:30] 2025-11-27 14:01:57,431 | INFO     | sum of deviations: 2613638405567.1562
[2025-11-27 09:02:30] 2025-11-27 14:01:57,432 | INFO     | mean x: 1764217335.5915997
[2025-11-27 09:02:30] 2025-11-27 14:01:57,432 | INFO     | mean y: 2957370.7399463807
[2025-11-27 09:02:30] 2025-11-27 14:01:57,432 | INFO     | intersect: -10609803482.947489
[2025-11-27 09:02:30] 2025-11-27 14:01:57,433 | INFO     | chi2: 2.9451859301900014
[2025-11-27 09:02:30] 2025-11-27 14:01:57,433 | INFO     | current chi2=2.9451859301900014 (change=24.266473338685152 %)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,433 | INFO     | right removable region: 1118
[2025-11-27 09:02:30] 2025-11-27 14:01:57,434 | INFO     | sum of square deviations: 440329058056.28046
[2025-11-27 09:02:30] 2025-11-27 14:01:57,460 | INFO     | sum of deviations: 1784343677858.297
[2025-11-27 09:02:30] 2025-11-27 14:01:57,460 | INFO     | mean x: 1764217793.0880783
[2025-11-27 09:02:30] 2025-11-27 14:01:57,460 | INFO     | mean y: 2952010.0071174377
[2025-11-27 09:02:30] 2025-11-27 14:01:57,460 | INFO     | intersect: -7146180684.886422
[2025-11-27 09:02:30] 2025-11-27 14:01:57,462 | INFO     | chi2: 4.036143958999832
[2025-11-27 09:02:30] 2025-11-27 14:01:57,462 | INFO     | current chi2=4.036143958999832 (change=34.82168473115384 %)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,464 | INFO     | sum of square deviations: 434478818894.904
[2025-11-27 09:02:30] 2025-11-27 14:01:57,486 | INFO     | sum of deviations: 1697520493359.4265
[2025-11-27 09:02:30] 2025-11-27 14:01:57,487 | INFO     | mean x: 1764217945.5889187
[2025-11-27 09:02:30] 2025-11-27 14:01:57,487 | INFO     | mean y: 2954272.905272565
[2025-11-27 09:02:30] 2025-11-27 14:01:57,487 | INFO     | intersect: -6889892943.460564
[2025-11-27 09:02:30] 2025-11-27 14:01:57,488 | INFO     | chi2: 3.957253852351476
[2025-11-27 09:02:30] 2025-11-27 14:01:57,488 | INFO     | current chi2=3.957253852351476 (change=1.9545910019499055 %)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,488 | INFO     | left removable region: 20
[2025-11-27 09:02:30] 2025-11-27 14:01:57,490 | INFO     | sum of square deviations: 410474248491.3376
[2025-11-27 09:02:30] 2025-11-27 14:01:57,527 | INFO     | sum of deviations: 2100641058073.4949
[2025-11-27 09:02:30] 2025-11-27 14:01:57,527 | INFO     | mean x: 1764217915.093807
[2025-11-27 09:02:30] 2025-11-27 14:01:57,527 | INFO     | mean y: 2972803.587431694
[2025-11-27 09:02:30] 2025-11-27 14:01:57,527 | INFO     | intersect: -9025580391.785748
[2025-11-27 09:02:30] 2025-11-27 14:01:57,528 | INFO     | chi2: 0.4647097244291608
[2025-11-27 09:02:30] 2025-11-27 14:01:57,529 | INFO     | current memory leak: 5.12 B/s (using 1098 data points, chi2=0.46)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,529 | INFO     | could have reported an average CPU frequency of 2625 MHz (41 samples)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | ..............................
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | . Timing measurements:
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | . get job = 0 s
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | . initial setup = 2 s
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | . payload setup = 5 s
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | . stage-in = 0 s
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | . payload execution = 68867 s
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | . stage-out = 3 s
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | . log creation = 0 s
[2025-11-27 09:02:30] 2025-11-27 14:01:57,530 | INFO     | ..............................
[2025-11-27 09:02:30] 2025-11-27 14:01:57,610 | INFO     | 
[2025-11-27 09:02:30] 2025-11-27 14:01:57,610 | INFO     | job summary report
[2025-11-27 09:02:30] 2025-11-27 14:01:57,610 | INFO     | --------------------------------------------------
[2025-11-27 09:02:30] 2025-11-27 14:01:57,610 | INFO     | PanDA job id: 6898214518
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | task id: 47556161
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | errors: (none)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | pilot state: finished 
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | transexitcode: 0
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | exeerrorcode: 0
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | exeerrordiag: 
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | exitcode: 0
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | exitmsg: OK
[2025-11-27 09:02:30] 2025-11-27 14:01:57,611 | INFO     | cpuconsumptiontime: 535080 s
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | nevents: 1000
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | neventsw: 0
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | pid: 4936
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | pgrp: 4936
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | corecount: 8
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | event service: False
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | sizes: {0: 2284093, 1: 2284292, 4: 2284554, 12: 2284582, 68877: 2340582, 68882: 2349576, 68885: 2349760, 68892: 2350102}
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | --------------------------------------------------
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | 
[2025-11-27 09:02:30] 2025-11-27 14:01:57,612 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 09:02:30] 2025-11-27 14:01:57,627 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,627 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,627 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,628 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,628 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,629 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,629 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,629 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,629 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,630 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:02:30] 2025-11-27 14:01:57,631 | INFO     | job 6898214518 has completed (purged errors)
[2025-11-27 09:02:30] 2025-11-27 14:01:57,631 | INFO     | overall cleanup function is called
[2025-11-27 09:02:30] 2025-11-27 14:01:58,648 | INFO     | --- collectZombieJob: --- 10, [4936]
[2025-11-27 09:02:30] 2025-11-27 14:01:58,648 | INFO     | zombie collector waiting for pid 4936
[2025-11-27 09:02:30] 2025-11-27 14:01:58,649 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:02:30] 2025-11-27 14:01:58,649 | INFO     | collected zombie processes
[2025-11-27 09:02:30] 2025-11-27 14:01:58,649 | INFO     | will attempt to kill all subprocesses of pid=4936
[2025-11-27 09:02:30] 2025-11-27 14:01:58,819 | INFO     | process IDs to be killed: [4936] (in reverse order)
[2025-11-27 09:02:30] 2025-11-27 14:01:58,870 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:02:30] 2025-11-27 14:01:58,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:02:30] 2025-11-27 14:01:58,872 | INFO     | did not find any defunct processes belonging to 4936
[2025-11-27 09:02:30] 2025-11-27 14:01:58,875 | INFO     | did not find any defunct processes belonging to 4936
[2025-11-27 09:02:30] 2025-11-27 14:01:58,876 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:02:30] 2025-11-27 14:01:58,876 | INFO     | ready for new job
[2025-11-27 09:02:30] 2025-11-27 14:01:58,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:02:30] 2025-11-27 14:01:58,880 | INFO     | ***************************************
[2025-11-27 09:02:30] 2025-11-27 14:01:58,880 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:02:30] 2025-11-27 14:01:58,880 | INFO     | ***************************************
[2025-11-27 09:02:30] 2025-11-27 14:01:58,880 | INFO     | 
[2025-11-27 09:02:30] 2025-11-27 14:01:58,881 | INFO     | architecture information:
[2025-11-27 09:02:30] 2025-11-27 14:01:58,882 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:02:30] 2025-11-27 14:01:58,898 | INFO     | cat /etc/os-release:
[2025-11-27 09:02:30] NAME="CentOS Linux"
[2025-11-27 09:02:30] VERSION="7 (Core)"
[2025-11-27 09:02:30] ID="centos"
[2025-11-27 09:02:30] ID_LIKE="rhel fedora"
[2025-11-27 09:02:30] VERSION_ID="7"
[2025-11-27 09:02:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:02:30] ANSI_COLOR="0;31"
[2025-11-27 09:02:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:02:30] HOME_URL="https://www.centos.org/"
[2025-11-27 09:02:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:02:30] 
[2025-11-27 09:02:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:02:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:02:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:02:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:02:30] 
[2025-11-27 09:02:30] 2025-11-27 14:01:58,898 | INFO     | ***************************************
[2025-11-27 09:02:30] 2025-11-27 14:01:59,400 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 09:02:30] 2025-11-27 14:01:59,414 | INFO     | sufficient remaining disk space (25854738432 B)
[2025-11-27 09:02:30] 2025-11-27 14:01:59,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:02:30] 2025-11-27 14:01:59,415 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:02:30] 2025-11-27 14:01:59,415 | INFO     | update_server=False
[2025-11-27 09:02:30] 2025-11-27 14:01:59,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:02:30] 2025-11-27 14:01:59,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:02:30] 2025-11-27 14:01:59,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:02:30] 2025-11-27 14:01:59,828 | INFO     | all job control threads have been joined
[2025-11-27 09:02:30] 2025-11-27 14:01:59,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:02:30] 2025-11-27 14:01:59,951 | INFO     | aborting loop
[2025-11-27 09:02:30] 2025-11-27 14:02:00,165 | INFO     | all data control threads have been joined
[2025-11-27 09:02:30] 2025-11-27 14:02:00,181 | INFO     | all payload control threads have been joined
[2025-11-27 09:02:30] 2025-11-27 14:02:00,422 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:00,422 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:00,522 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:00,595 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:00,689 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:00,833 | INFO     | [job] control thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:00,957 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:01,171 | INFO     | [data] control thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:01,182 | INFO     | [payload] control thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:01,425 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:01,454 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:01,459 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:01,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:02:30] 2025-11-27 14:02:01,623 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:01,709 | INFO     | [job] validate thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:01,919 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:05,605 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:02:30] 2025-11-27 14:02:24,004 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:02:30] 2025-11-27 14:02:24,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140653147440960)>', '<ExcThread(monitor, started 140652696286976)>']
[2025-11-27 09:02:30] 2025-11-27 14:02:30,020 | INFO     | all workflow threads have been joined
[2025-11-27 09:02:30] 2025-11-27 14:02:30,020 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:02:30] 2025-11-27 14:02:30,020 | INFO     | traces error code: 0
[2025-11-27 09:02:30] 2025-11-27 14:02:30,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:02:30] 2025-11-27 14:02:30,499 | INFO     | PID=30767 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 09:02:30] 2025-11-27 14:02:30,500 | INFO     | .. there are 3 such processes running
[2025-11-27 09:02:30] 2025-11-27 14:02:30,500 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:02:30] 2025-11-27 14:02:30,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:02:30] 2025-11-27 14:02:30,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:02:30] 2025-11-27 14:02:30,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:02:30] 2025-11-27 14:02:30,501 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 09:02:30] 2025-11-27 14:02:30,501 | INFO     | [monitor] control thread has ended
[2025-11-27 09:02:30] 2025-11-27 14:02:30,590 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:02:30] 2025-11-27 14:02:30,592 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:02:30] 2025-11-27 14:02:30,594 [wrapper] pilotpid: 30767
[2025-11-27 09:02:30] 2025-11-27 14:02:30,596 [wrapper] Pilot exit status: 0
[2025-11-27 09:02:30] 2025-11-27 14:02:30,612 [wrapper] pandaids: 6898214518
[2025-11-27 09:02:30] 2025-11-27 14:02:30,641 [wrapper] cleanup supervisor_pilot 26346 30768
[2025-11-27 09:02:30] 2025-11-27 14:02:30,643 [wrapper] Test setup, not cleaning
[2025-11-27 09:02:30] 2025-11-27 14:02:30,645 [wrapper] apfmon messages muted
[2025-11-27 09:02:30] 2025-11-27 14:02:30,647 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:02:30] 2025-11-27 14:02:30,649 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:02:30]  *** Error codes and diagnostics ***
[2025-11-27 09:02:30]     "exeErrorCode": 0,
[2025-11-27 09:02:30]     "exeErrorDiag": "",
[2025-11-27 09:02:30]     "pilotErrorCode": 0,
[2025-11-27 09:02:30]     "pilotErrorDiag": "",
[2025-11-27 09:02:30]  *** Listing of results directory ***
[2025-11-27 09:02:30] total 1319936
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 23:39 pilot3.tar.gz
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 23:42 queuedata.json
[2025-11-27 09:02:30] -rwx------ 1 boincer umatlas     36292 Nov 25 23:43 runpilot2-wrapper.sh
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas       100 Nov 26 13:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:02:30] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 13:53 run_atlas
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas       105 Nov 26 13:53 job.xml
[2025-11-27 09:02:30] -rw-r--r-- 2 boincer umatlas 409675790 Nov 26 13:53 EVNT.47483658._002503.pool.root.1
[2025-11-27 09:02:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 13:53 start_atlas.sh
[2025-11-27 09:02:30] drwxrwx--x 2 boincer umatlas      4096 Nov 26 13:53 shared
[2025-11-27 09:02:30] -rw-r--r-- 2 boincer umatlas    590106 Nov 26 13:53 input.tar.gz
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas         0 Nov 26 13:53 boinc_lockfile
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 13:53 pandaJob.out
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas        57 Nov 26 13:53 setup.sh.local
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas    991522 Nov 26 13:53 agis_schedconf.cvmfs.json
[2025-11-27 09:02:30] drwx------ 5 boincer umatlas      4096 Nov 26 13:53 pilot3
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas       533 Nov 27 08:45 boinc_task_state.xml
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas 914328795 Nov 27 09:01 HITS.47556161._004857.pool.root.1
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas      1068 Nov 27 09:01 memory_monitor_summary.json
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas   1516240 Nov 27 09:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas   2298815 Nov 27 09:01 log.47556161._004857.job.log.tgz.1
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas      8654 Nov 27 09:01 heartbeat.json
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas      5953 Nov 27 09:01 init_data.xml
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 09:02 boinc_mmap_file
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas        29 Nov 27 09:02 wrapper_checkpoint.txt
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas        95 Nov 27 09:02 pilot_heartbeat.json
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas       890 Nov 27 09:02 pilotlog.txt
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas   9547217 Nov 27 09:02 log.47556161._004857.job.log.1
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas       353 Nov 27 09:02 output.list
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas       620 Nov 27 09:02 runtime_log
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas  11868160 Nov 27 09:02 result.tar.gz
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 09:02 runtime_log.err
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas       667 Nov 27 09:02 P3qKDmtYMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7yMKDmGDKTTn.diag
[2025-11-27 09:02:30] -rw-r--r-- 1 boincer umatlas     21270 Nov 27 09:02 stderr.txt
[2025-11-27 09:02:30] HITS file was successfully produced:
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas 914328795 Nov 27 09:01 shared/HITS.pool.root.1
[2025-11-27 09:02:30]  *** Contents of shared directory: ***
[2025-11-27 09:02:30] total 1305168
[2025-11-27 09:02:30] -rw-r--r-- 2 boincer umatlas 409675790 Nov 26 13:53 ATLAS.root_0
[2025-11-27 09:02:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 13:53 start_atlas.sh
[2025-11-27 09:02:30] -rw-r--r-- 2 boincer umatlas    590106 Nov 26 13:53 input.tar.gz
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas 914328795 Nov 27 09:01 HITS.pool.root.1
[2025-11-27 09:02:30] -rw------- 1 boincer umatlas  11868160 Nov 27 09:02 result.tar.gz
09:02:32 (27086): run_atlas exited; CPU time 534473.238064
09:02:32 (27086): called boinc_finish(0)

</stderr_txt>
]]>

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