Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:57:14 (1789126): wrapper (7.7.26015): starting
13:57:14 (1789126): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:57:14] Arguments: --nthreads 8
[2025-11-26 13:57:14] Threads: 8
[2025-11-26 13:57:14] Checking for CVMFS
[2025-11-26 13:57:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:57:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:57:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:57:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:57:15] 2.13.3.0 12763 30393 183688 153331 3 929 35918308 40960001 51994 16776704 0 261272390 99.741 161450949 35715 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:57:15] CVMFS is ok
[2025-11-26 13:57:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:57:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:57:15] Further information can be found at the LHC@home message board.
[2025-11-26 13:57:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:57:15] Checking for apptainer binary...
[2025-11-26 13:57:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:57:15] Running /usr/bin/apptainer --version
[2025-11-26 13:57:15] apptainer version 1.4.4-1.el9
[2025-11-26 13:57:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:57:15] c7-2-17.aglt2.org
[2025-11-26 13:57:15] apptainer works
[2025-11-26 13:57:15] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:57:15] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:57:15] Starting ATLAS job with PandaID=6894270658
[2025-11-26 13:57:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:53:26]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:53:26] 2025-11-27 18:52:26,989 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 13:53:26] 2025-11-27 18:52:26,993 | INFO     | executing command: lscpu
[2025-11-27 13:53:26] 2025-11-27 18:52:27,127 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 13:53:26] 2025-11-27 18:52:27,820 | INFO     | monitor loop #4873: job 0:6894270658 is in state 'finished'
[2025-11-27 13:53:26] 2025-11-27 18:52:27,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:53:26] 2025-11-27 18:52:29,990 | INFO     | PID=1796823 has CPU usage=16.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 13:53:26] 2025-11-27 18:52:29,990 | INFO     | .. there are 84 such processes running
[2025-11-27 13:53:26] 2025-11-27 18:52:30,370 | INFO     | monitor loop #4874: job 0:6894270658 is in state 'finished'
[2025-11-27 13:53:26] 2025-11-27 18:52:30,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:53:26] 2025-11-27 18:52:30,991 | INFO     | time since job start (86085s) is within the limit (172800.0s)
[2025-11-27 13:53:26] 2025-11-27 18:52:32,929 | INFO     | monitor loop #4875: job 0:6894270658 is in state 'finished'
[2025-11-27 13:53:26] 2025-11-27 18:52:32,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:53:26] 2025-11-27 18:52:32,996 | INFO     | time since job start (86087s) is within the limit (172800.0s)
[2025-11-27 13:53:26] 2025-11-27 18:52:35,002 | INFO     | time since job start (86090s) is within the limit (172800.0s)
[2025-11-27 13:53:26] 2025-11-27 18:52:35,434 | INFO     | monitor loop #4876: job 0:6894270658 is in state 'finished'
[2025-11-27 13:53:26] 2025-11-27 18:52:35,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:53:26] 2025-11-27 18:52:36,261 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 13:53:26] 2025-11-27 18:52:36,274 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3365.4258229166667
[2025-11-27 13:53:26] 2025-11-27 18:52:36,315 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6894270658/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:53:26] 2025-11-27 18:52:36,316 | INFO     | extracted standard info from prmon json
[2025-11-27 13:53:26] 2025-11-27 18:52:36,316 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:53:26] 2025-11-27 18:52:36,316 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:53:26] 2025-11-27 18:52:36,411 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:53:26] 2025-11-27 18:52:36,412 | INFO     | sum of square deviations: 869245462241.5288
[2025-11-27 13:53:26] 2025-11-27 18:52:36,457 | INFO     | sum of deviations: 3490615785534.221
[2025-11-27 13:53:26] 2025-11-27 18:52:36,457 | INFO     | mean x: 1764226505.1262412
[2025-11-27 13:53:26] 2025-11-27 18:52:36,457 | INFO     | mean y: 2951885.4425531914
[2025-11-27 13:53:26] 2025-11-27 18:52:36,457 | INFO     | intersect: -7081625665.495985
[2025-11-27 13:53:26] 2025-11-27 18:52:36,458 | INFO     | chi2: 14.994486234770738
[2025-11-27 13:53:26] 2025-11-27 18:52:36,460 | INFO     | sum of square deviations: 860031335532.0626
[2025-11-27 13:53:26] 2025-11-27 18:52:36,500 | INFO     | sum of deviations: 3965604367687.6685
[2025-11-27 13:53:26] 2025-11-27 18:52:36,500 | INFO     | mean x: 1764226352.6284697
[2025-11-27 13:53:26] 2025-11-27 18:52:36,500 | INFO     | mean y: 2959746.353736655
[2025-11-27 13:53:26] 2025-11-27 18:52:36,500 | INFO     | intersect: -8131887718.529499
[2025-11-27 13:53:26] 2025-11-27 18:52:36,501 | INFO     | chi2: 11.894739077536538
[2025-11-27 13:53:26] 2025-11-27 18:52:36,501 | INFO     | current chi2=11.894739077536538 (change=20.6725799650687 %)
[2025-11-27 13:53:26] 2025-11-27 18:52:36,502 | INFO     | right removable region: 1404
[2025-11-27 13:53:26] 2025-11-27 18:52:36,503 | INFO     | sum of square deviations: 860030796902.0616
[2025-11-27 13:53:26] 2025-11-27 18:52:36,552 | INFO     | sum of deviations: 2972944090385.83
[2025-11-27 13:53:26] 2025-11-27 18:52:36,552 | INFO     | mean x: 1764226657.6284697
[2025-11-27 13:53:26] 2025-11-27 18:52:36,552 | INFO     | mean y: 2960450.2391459076
[2025-11-27 13:53:26] 2025-11-27 18:52:36,552 | INFO     | intersect: -6095596990.716061
[2025-11-27 13:53:26] 2025-11-27 18:52:36,553 | INFO     | chi2: 11.726291513984972
[2025-11-27 13:53:26] 2025-11-27 18:52:36,553 | INFO     | current chi2=11.726291513984972 (change=21.795976665123373 %)
[2025-11-27 13:53:26] 2025-11-27 18:52:36,553 | INFO     | left removable region: 10
[2025-11-27 13:53:26] 2025-11-27 18:52:36,579 | INFO     | sum of square deviations: 839988884283.1838
[2025-11-27 13:53:26] 2025-11-27 18:52:36,994 | INFO     | sum of deviations: 3362266940940.424
[2025-11-27 13:53:26] 2025-11-27 18:52:36,994 | INFO     | mean x: 1764226627.133429
[2025-11-27 13:53:26] 2025-11-27 18:52:36,994 | INFO     | mean y: 2972941.293400287
[2025-11-27 13:53:26] 2025-11-27 18:52:36,995 | INFO     | intersect: -7058788203.081196
[2025-11-27 13:53:26] 2025-11-27 18:52:36,996 | INFO     | chi2: 7.6738434101097175
[2025-11-27 13:53:26] 2025-11-27 18:52:36,996 | INFO     | current memory leak: 4.00 B/s (using 1394 data points, chi2=7.67)
[2025-11-27 13:53:26] 2025-11-27 18:52:36,997 | INFO     | could have reported an average CPU frequency of 3357 MHz (51 samples)
[2025-11-27 13:53:26] 2025-11-27 18:52:36,997 | INFO     | ..............................
[2025-11-27 13:53:26] 2025-11-27 18:52:36,997 | INFO     | . Timing measurements:
[2025-11-27 13:53:26] 2025-11-27 18:52:36,997 | INFO     | . get job = 0 s
[2025-11-27 13:53:26] 2025-11-27 18:52:36,997 | INFO     | . initial setup = 4 s
[2025-11-27 13:53:26] 2025-11-27 18:52:36,997 | INFO     | . payload setup = 19 s
[2025-11-27 13:53:26] 2025-11-27 18:52:36,997 | INFO     | . stage-in = 0 s
[2025-11-27 13:53:26] 2025-11-27 18:52:36,997 | INFO     | . payload execution = 86014 s
[2025-11-27 13:53:26] 2025-11-27 18:52:36,998 | INFO     | . stage-out = 7 s
[2025-11-27 13:53:26] 2025-11-27 18:52:36,998 | INFO     | . log creation = 0 s
[2025-11-27 13:53:26] 2025-11-27 18:52:36,998 | INFO     | ..............................
[2025-11-27 13:53:26] 2025-11-27 18:52:37,020 | INFO     | time since job start (86092s) is within the limit (172800.0s)
[2025-11-27 13:53:26] 2025-11-27 18:52:37,081 | INFO     | 
[2025-11-27 13:53:26] 2025-11-27 18:52:37,083 | INFO     | job summary report
[2025-11-27 13:53:26] 2025-11-27 18:52:37,083 | INFO     | --------------------------------------------------
[2025-11-27 13:53:26] 2025-11-27 18:52:37,083 | INFO     | PanDA job id: 6894270658
[2025-11-27 13:53:26] 2025-11-27 18:52:37,083 | INFO     | task id: 47533967
[2025-11-27 13:53:26] 2025-11-27 18:52:37,083 | INFO     | errors: (none)
[2025-11-27 13:53:26] 2025-11-27 18:52:37,083 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:53:26] 2025-11-27 18:52:37,083 | INFO     | pilot state: finished 
[2025-11-27 13:53:26] 2025-11-27 18:52:37,083 | INFO     | transexitcode: 0
[2025-11-27 13:53:26] 2025-11-27 18:52:37,161 | INFO     | exeerrorcode: 0
[2025-11-27 13:53:26] 2025-11-27 18:52:37,161 | INFO     | exeerrordiag: 
[2025-11-27 13:53:26] 2025-11-27 18:52:37,161 | INFO     | exitcode: 0
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | exitmsg: OK
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | cpuconsumptiontime: 197439 s
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | nevents: 1000
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | neventsw: 0
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | pid: 1814566
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | pgrp: 1814566
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | corecount: 8
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | event service: False
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | sizes: {0: 2284315, 1: 2284315, 12: 2284343, 13: 2284633, 22: 2284689, 86037: 2349849, 86038: 2349976, 86045: 2359026, 86047: 2359082, 86058: 2359328}
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | --------------------------------------------------
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | 
[2025-11-27 13:53:26] 2025-11-27 18:52:37,162 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 13:53:26] 2025-11-27 18:52:37,554 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,554 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,554 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,554 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:53:26] 2025-11-27 18:52:37,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,556 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:53:26] 2025-11-27 18:52:37,556 | INFO     | job 6894270658 has completed (purged errors)
[2025-11-27 13:53:26] 2025-11-27 18:52:37,556 | INFO     | overall cleanup function is called
[2025-11-27 13:53:26] 2025-11-27 18:52:38,761 | INFO     | --- collectZombieJob: --- 10, [1814566]
[2025-11-27 13:53:26] 2025-11-27 18:52:38,761 | INFO     | zombie collector waiting for pid 1814566
[2025-11-27 13:53:26] 2025-11-27 18:52:38,761 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:53:26] 2025-11-27 18:52:38,762 | INFO     | collected zombie processes
[2025-11-27 13:53:26] 2025-11-27 18:52:38,762 | INFO     | will attempt to kill all subprocesses of pid=1814566
[2025-11-27 13:53:26] 2025-11-27 18:52:41,224 | INFO     | process IDs to be killed: [1814566] (in reverse order)
[2025-11-27 13:53:26] 2025-11-27 18:52:41,646 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:53:26] 2025-11-27 18:52:41,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:53:26] 2025-11-27 18:52:41,689 | INFO     | did not find any defunct processes belonging to 1814566
[2025-11-27 13:53:26] 2025-11-27 18:52:41,722 | INFO     | did not find any defunct processes belonging to 1814566
[2025-11-27 13:53:26] 2025-11-27 18:52:41,723 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:53:26] 2025-11-27 18:52:41,724 | INFO     | ready for new job
[2025-11-27 13:53:26] 2025-11-27 18:52:41,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:53:26] 2025-11-27 18:52:41,745 | INFO     | ***************************************
[2025-11-27 13:53:26] 2025-11-27 18:52:41,745 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:53:26] 2025-11-27 18:52:41,745 | INFO     | ***************************************
[2025-11-27 13:53:26] 2025-11-27 18:52:41,745 | INFO     | 
[2025-11-27 13:53:26] 2025-11-27 18:52:41,770 | INFO     | architecture information:
[2025-11-27 13:53:26] 2025-11-27 18:52:41,772 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:53:26] 2025-11-27 18:52:41,813 | INFO     | cat /etc/os-release:
[2025-11-27 13:53:26] NAME="CentOS Linux"
[2025-11-27 13:53:26] VERSION="7 (Core)"
[2025-11-27 13:53:26] ID="centos"
[2025-11-27 13:53:26] ID_LIKE="rhel fedora"
[2025-11-27 13:53:26] VERSION_ID="7"
[2025-11-27 13:53:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:53:26] ANSI_COLOR="0;31"
[2025-11-27 13:53:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:53:26] HOME_URL="https://www.centos.org/"
[2025-11-27 13:53:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:53:26] 
[2025-11-27 13:53:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:53:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:53:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:53:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:53:26] 
[2025-11-27 13:53:26] 2025-11-27 18:52:41,814 | INFO     | ***************************************
[2025-11-27 13:53:26] 2025-11-27 18:52:42,317 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 13:53:26] 2025-11-27 18:52:42,388 | INFO     | sufficient remaining disk space (120234967040 B)
[2025-11-27 13:53:26] 2025-11-27 18:52:42,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:53:26] 2025-11-27 18:52:42,389 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:53:26] 2025-11-27 18:52:42,389 | INFO     | update_server=False
[2025-11-27 13:53:26] 2025-11-27 18:52:42,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:53:26] 2025-11-27 18:52:42,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:53:26] 2025-11-27 18:52:42,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:53:26] 2025-11-27 18:52:42,397 | INFO     | aborting loop
[2025-11-27 13:53:26] 2025-11-27 18:52:42,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:53:26] 2025-11-27 18:52:43,288 | INFO     | all data control threads have been joined
[2025-11-27 13:53:26] 2025-11-27 18:52:43,385 | INFO     | all job control threads have been joined
[2025-11-27 13:53:26] 2025-11-27 18:52:43,395 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:43,398 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:43,400 | INFO     | all payload control threads have been joined
[2025-11-27 13:53:26] 2025-11-27 18:52:43,403 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:43,502 | INFO     | [job] validate thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:43,510 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:43,676 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,035 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,099 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,203 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,204 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,293 | INFO     | [data] control thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,391 | INFO     | [job] control thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,406 | INFO     | [payload] control thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,595 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:44,612 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:52:45,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:53:26] 2025-11-27 18:52:49,696 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:53:26] 2025-11-27 18:53:12,460 | INFO     | PID=1796823 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:53:26] 2025-11-27 18:53:12,460 | INFO     | .. there are 83 such processes running
[2025-11-27 13:53:26] 2025-11-27 18:53:12,460 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:53:26] 2025-11-27 18:53:12,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:53:26] 2025-11-27 18:53:12,461 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:53:26] 2025-11-27 18:53:18,900 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:53:26] 2025-11-27 18:53:19,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640180172608)>', '<ExcThread(monitor, started 140639702345472)>']
[2025-11-27 13:53:26] 2025-11-27 18:53:20,514 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:53:26] 2025-11-27 18:53:20,514 | INFO     | [monitor] control thread has ended
[2025-11-27 13:53:26] 2025-11-27 18:53:24,984 | INFO     | all workflow threads have been joined
[2025-11-27 13:53:26] 2025-11-27 18:53:24,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:53:26] 2025-11-27 18:53:24,985 | INFO     | traces error code: 0
[2025-11-27 13:53:26] 2025-11-27 18:53:24,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:53:26] 2025-11-27 18:53:25,379 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:53:26] 2025-11-27 18:53:25,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:53:26] 2025-11-27 18:53:25,459 [wrapper] pilotpid: 1796823
[2025-11-27 13:53:26] 2025-11-27 18:53:25,490 [wrapper] Pilot exit status: 0
[2025-11-27 13:53:26] 2025-11-27 18:53:25,543 [wrapper] pandaids: 6894270658
[2025-11-27 13:53:26] 2025-11-27 18:53:25,760 [wrapper] cleanup supervisor_pilot 1649184 1796824
[2025-11-27 13:53:26] 2025-11-27 18:53:25,762 [wrapper] Test setup, not cleaning
[2025-11-27 13:53:26] 2025-11-27 18:53:25,769 [wrapper] apfmon messages muted
[2025-11-27 13:53:26] 2025-11-27 18:53:25,773 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:53:26] 2025-11-27 18:53:25,776 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:53:26]  *** Error codes and diagnostics ***
[2025-11-27 13:53:26]     "exeErrorCode": 0,
[2025-11-27 13:53:26]     "exeErrorDiag": "",
[2025-11-27 13:53:26]     "pilotErrorCode": 0,
[2025-11-27 13:53:26]     "pilotErrorDiag": "",
[2025-11-27 13:53:26]  *** Listing of results directory ***
[2025-11-27 13:53:26] total 1328896
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 01:04 pilot3.tar.gz
[2025-11-27 13:53:26] -rwx------. 1 boincer umatlas     36292 Nov 21 01:42 runpilot2-wrapper.sh
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 01:42 queuedata.json
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas       100 Nov 26 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:53:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 13:57 run_atlas
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas       105 Nov 26 13:57 job.xml
[2025-11-27 13:53:26] -rw-r--r--. 2 boincer umatlas 408229654 Nov 26 13:57 EVNT.47493127._002285.pool.root.1
[2025-11-27 13:53:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 13:57 shared
[2025-11-27 13:53:26] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 13:57 input.tar.gz
[2025-11-27 13:53:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:57 start_atlas.sh
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas         0 Nov 26 13:57 boinc_lockfile
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 13:57 pandaJob.out
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas        57 Nov 26 13:57 setup.sh.local
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas    991522 Nov 26 13:57 agis_schedconf.cvmfs.json
[2025-11-27 13:53:26] drwx------. 5 boincer umatlas      4096 Nov 26 13:57 pilot3
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:28 boinc_task_state.xml
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas      6945 Nov 27 13:47 init_data.xml
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas 922726889 Nov 27 13:51 HITS.47533967._002567.pool.root.1
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas      1074 Nov 27 13:52 memory_monitor_summary.json
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas        95 Nov 27 13:52 pilot_heartbeat.json
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas   2417657 Nov 27 13:52 log.47533967._002567.job.log.tgz.1
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas      8639 Nov 27 13:52 heartbeat.json
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:53 wrapper_checkpoint.txt
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:53 boinc_mmap_file
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas      4825 Nov 27 13:53 pilotlog.txt
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas  10532372 Nov 27 13:53 log.47533967._002567.job.log.1
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas       353 Nov 27 13:53 output.list
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:53 runtime_log
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas  12974080 Nov 27 13:53 result.tar.gz
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas       667 Nov 27 13:53 tFgNDm91Zg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuPHKDm1UpeLn.diag
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 13:53 runtime_log.err
[2025-11-27 13:53:26] -rw-r--r--. 1 boincer umatlas     21915 Nov 27 13:53 stderr.txt
[2025-11-27 13:53:26] HITS file was successfully produced:
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas 922726889 Nov 27 13:51 shared/HITS.pool.root.1
[2025-11-27 13:53:26]  *** Contents of shared directory: ***
[2025-11-27 13:53:26] total 1313044
[2025-11-27 13:53:26] -rw-r--r--. 2 boincer umatlas 408229654 Nov 26 13:57 ATLAS.root_0
[2025-11-27 13:53:26] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 13:57 input.tar.gz
[2025-11-27 13:53:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:57 start_atlas.sh
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas 922726889 Nov 27 13:51 HITS.pool.root.1
[2025-11-27 13:53:26] -rw-------. 1 boincer umatlas  12974080 Nov 27 13:53 result.tar.gz
13:53:27 (1789126): run_atlas exited; CPU time 200130.355967
13:53:27 (1789126): called boinc_finish(0)

</stderr_txt>
]]>

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