Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:59:28 (5267): wrapper (7.7.26015): starting
13:59:28 (5267): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 13:59:28] Arguments: --nthreads 12
[2025-11-26 13:59:28] Threads: 12
[2025-11-26 13:59:28] Checking for CVMFS
[2025-11-26 13:59:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:59:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:59:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:59:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:59:29] 2.11.2.0 2998 288027 95620 153331 2 81 18467995 20275201 1 130560 1 129714804 99.967 16925311 14541 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 13:59:29] CVMFS is ok
[2025-11-26 13:59:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:59:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:59:29] Further information can be found at the LHC@home message board.
[2025-11-26 13:59:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:59:29] Checking for apptainer binary...
[2025-11-26 13:59:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:59:29] Running /usr/bin/apptainer --version
[2025-11-26 13:59:29] apptainer version 1.3.2-1.el7
[2025-11-26 13:59:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:59:30] c-205-25.aglt2.org
[2025-11-26 13:59:30] apptainer works
[2025-11-26 13:59:30] Set ATHENA_PROC_NUMBER=12
[2025-11-26 13:59:30] Set ATHENA_CORE_NUMBER=12
[2025-11-26 13:59:30] Starting ATLAS job with PandaID=6897863834
[2025-11-26 13:59:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:11:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:11:32] 2025-11-27 02:10:26,098 | INFO     | time since job start (25841s) is within the limit (172800.0s)
[2025-11-26 21:11:32] 2025-11-27 02:10:27,186 | INFO     | monitor loop #1933: job 0:6897863834 is in state 'finished'
[2025-11-26 21:11:32] 2025-11-27 02:10:27,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,103 | INFO     | time since job start (25843s) is within the limit (172800.0s)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,814 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 21:11:32] 2025-11-27 02:10:28,818 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-26 21:11:32] 2025-11-27 02:10:28,821 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897863834/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,825 | INFO     | extracted standard info from prmon json
[2025-11-26 21:11:32] 2025-11-27 02:10:28,825 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:11:32] 2025-11-27 02:10:28,825 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:11:32] 2025-11-27 02:10:28,832 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:11:32] 2025-11-27 02:10:28,832 | INFO     | sum of square deviations: 23469029184.81332
[2025-11-26 21:11:32] 2025-11-27 02:10:28,836 | INFO     | sum of deviations: 459758084089.61224
[2025-11-26 21:11:32] 2025-11-27 02:10:28,836 | INFO     | mean x: 1764196485.2671394
[2025-11-26 21:11:32] 2025-11-27 02:10:28,837 | INFO     | mean y: 3428178.6052009454
[2025-11-26 21:11:32] 2025-11-27 02:10:28,837 | INFO     | intersect: -34557166110.864105
[2025-11-26 21:11:32] 2025-11-27 02:10:28,837 | INFO     | chi2: 5.308474561739847
[2025-11-26 21:11:32] 2025-11-27 02:10:28,838 | INFO     | sum of square deviations: 22646620321.95216
[2025-11-26 21:11:32] 2025-11-27 02:10:28,841 | INFO     | sum of deviations: 600977263684.2097
[2025-11-26 21:11:32] 2025-11-27 02:10:28,842 | INFO     | mean x: 1764196332.770335
[2025-11-26 21:11:32] 2025-11-27 02:10:28,842 | INFO     | mean y: 3454331.710526316
[2025-11-26 21:11:32] 2025-11-27 02:10:28,842 | INFO     | intersect: -46813327580.87817
[2025-11-26 21:11:32] 2025-11-27 02:10:28,842 | INFO     | chi2: 2.947796302187151
[2025-11-26 21:11:32] 2025-11-27 02:10:28,843 | INFO     | current chi2=2.947796302187151 (change=44.46999287831165 %)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,843 | INFO     | sum of square deviations: 21843653684.082287
[2025-11-26 21:11:32] 2025-11-27 02:10:28,847 | INFO     | sum of deviations: 624277944033.7648
[2025-11-26 21:11:32] 2025-11-27 02:10:28,847 | INFO     | mean x: 1764196180.2736077
[2025-11-26 21:11:32] 2025-11-27 02:10:28,847 | INFO     | mean y: 3458711.895883777
[2025-11-26 21:11:32] 2025-11-27 02:10:28,847 | INFO     | intersect: -50416163399.94862
[2025-11-26 21:11:32] 2025-11-27 02:10:28,848 | INFO     | chi2: 2.6677402258434935
[2025-11-26 21:11:32] 2025-11-27 02:10:28,848 | INFO     | current chi2=2.6677402258434935 (change=9.500523361667389 %)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,848 | INFO     | right removable region: 412
[2025-11-26 21:11:32] 2025-11-27 02:10:28,848 | INFO     | sum of square deviations: 22646551391.952164
[2025-11-26 21:11:32] 2025-11-27 02:10:28,852 | INFO     | sum of deviations: 314454498445.1434
[2025-11-26 21:11:32] 2025-11-27 02:10:28,852 | INFO     | mean x: 1764196637.770335
[2025-11-26 21:11:32] 2025-11-27 02:10:28,852 | INFO     | mean y: 3455045.688995215
[2025-11-26 21:11:32] 2025-11-27 02:10:28,852 | INFO     | intersect: -24492970890.748383
[2025-11-26 21:11:32] 2025-11-27 02:10:28,853 | INFO     | chi2: 2.856343280533716
[2025-11-26 21:11:32] 2025-11-27 02:10:28,853 | INFO     | current chi2=2.856343280533716 (change=46.19276691800606 %)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,854 | INFO     | sum of square deviations: 21843515824.082287
[2025-11-26 21:11:32] 2025-11-27 02:10:28,857 | INFO     | sum of deviations: 274900193883.1333
[2025-11-26 21:11:32] 2025-11-27 02:10:28,857 | INFO     | mean x: 1764196790.2736077
[2025-11-26 21:11:32] 2025-11-27 02:10:28,857 | INFO     | mean y: 3462555.88377724
[2025-11-26 21:11:32] 2025-11-27 02:10:28,858 | INFO     | intersect: -22198917482.202038
[2025-11-26 21:11:32] 2025-11-27 02:10:28,858 | INFO     | chi2: 2.7763795043704533
[2025-11-26 21:11:32] 2025-11-27 02:10:28,858 | INFO     | current chi2=2.7763795043704533 (change=2.7995156152352005 %)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,858 | INFO     | left removable region: 20
[2025-11-26 21:11:32] 2025-11-27 02:10:28,859 | INFO     | sum of square deviations: 18678026900.568924
[2025-11-26 21:11:32] 2025-11-27 02:10:28,862 | INFO     | sum of deviations: 379799462687.5585
[2025-11-26 21:11:32] 2025-11-27 02:10:28,862 | INFO     | mean x: 1764196759.7831633
[2025-11-26 21:11:32] 2025-11-27 02:10:28,862 | INFO     | mean y: 3506201.6301020407
[2025-11-26 21:11:32] 2025-11-27 02:10:28,862 | INFO     | intersect: -35869714508.87053
[2025-11-26 21:11:32] 2025-11-27 02:10:28,863 | INFO     | chi2: 0.06379172819942666
[2025-11-26 21:11:32] 2025-11-27 02:10:28,863 | INFO     | current memory leak: 20.33 B/s (using 392 data points, chi2=0.06)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,863 | INFO     | could have reported an average CPU frequency of 2351 MHz (18 samples)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | ..............................
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | . Timing measurements:
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | . get job = 0 s
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | . initial setup = 2 s
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | . payload setup = 7 s
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | . stage-in = 0 s
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | . payload execution = 25806 s
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | . stage-out = 3 s
[2025-11-26 21:11:32] 2025-11-27 02:10:28,864 | INFO     | . log creation = 0 s
[2025-11-26 21:11:32] 2025-11-27 02:10:28,865 | INFO     | ..............................
[2025-11-26 21:11:32] 2025-11-27 02:10:28,948 | INFO     | 
[2025-11-26 21:11:32] 2025-11-27 02:10:28,949 | INFO     | job summary report
[2025-11-26 21:11:32] 2025-11-27 02:10:28,949 | INFO     | --------------------------------------------------
[2025-11-26 21:11:32] 2025-11-27 02:10:28,949 | INFO     | PanDA job id: 6897863834
[2025-11-26 21:11:32] 2025-11-27 02:10:28,949 | INFO     | task id: 47556161
[2025-11-26 21:11:32] 2025-11-27 02:10:28,949 | INFO     | errors: (none)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,949 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:11:32] 2025-11-27 02:10:28,949 | INFO     | pilot state: finished 
[2025-11-26 21:11:32] 2025-11-27 02:10:28,950 | INFO     | transexitcode: 0
[2025-11-26 21:11:32] 2025-11-27 02:10:28,950 | INFO     | exeerrorcode: 0
[2025-11-26 21:11:32] 2025-11-27 02:10:28,950 | INFO     | exeerrordiag: 
[2025-11-26 21:11:32] 2025-11-27 02:10:28,950 | INFO     | exitcode: 0
[2025-11-26 21:11:32] 2025-11-27 02:10:28,950 | INFO     | exitmsg: OK
[2025-11-26 21:11:32] 2025-11-27 02:10:28,950 | INFO     | cpuconsumptiontime: 296228 s
[2025-11-26 21:11:32] 2025-11-27 02:10:28,951 | INFO     | nevents: 1000
[2025-11-26 21:11:32] 2025-11-27 02:10:28,951 | INFO     | neventsw: 0
[2025-11-26 21:11:32] 2025-11-27 02:10:28,951 | INFO     | pid: 15509
[2025-11-26 21:11:32] 2025-11-27 02:10:28,951 | INFO     | pgrp: 15509
[2025-11-26 21:11:32] 2025-11-27 02:10:28,951 | INFO     | corecount: 12
[2025-11-26 21:11:32] 2025-11-27 02:10:28,951 | INFO     | event service: False
[2025-11-26 21:11:32] 2025-11-27 02:10:28,952 | INFO     | sizes: {0: 2284265, 5: 2284527, 11: 2284583, 25817: 2321820, 25820: 2330814, 25822: 2330870, 25827: 2331244}
[2025-11-26 21:11:32] 2025-11-27 02:10:28,952 | INFO     | --------------------------------------------------
[2025-11-26 21:11:32] 2025-11-27 02:10:28,952 | INFO     | 
[2025-11-26 21:11:32] 2025-11-27 02:10:28,952 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 21:11:32] 2025-11-27 02:10:28,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,978 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,978 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,978 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,979 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,979 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,979 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,980 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,980 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:11:32] 2025-11-27 02:10:28,981 | INFO     | job 6897863834 has completed (purged errors)
[2025-11-26 21:11:32] 2025-11-27 02:10:28,981 | INFO     | overall cleanup function is called
[2025-11-26 21:11:32] 2025-11-27 02:10:29,997 | INFO     | --- collectZombieJob: --- 10, [15509]
[2025-11-26 21:11:32] 2025-11-27 02:10:29,998 | INFO     | zombie collector waiting for pid 15509
[2025-11-26 21:11:32] 2025-11-27 02:10:29,998 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:11:32] 2025-11-27 02:10:29,998 | INFO     | collected zombie processes
[2025-11-26 21:11:32] 2025-11-27 02:10:29,999 | INFO     | will attempt to kill all subprocesses of pid=15509
[2025-11-26 21:11:32] 2025-11-27 02:10:30,091 | INFO     | process IDs to be killed: [15509] (in reverse order)
[2025-11-26 21:11:32] 2025-11-27 02:10:30,140 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:11:32] 2025-11-27 02:10:30,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:11:32] 2025-11-27 02:10:30,144 | INFO     | did not find any defunct processes belonging to 15509
[2025-11-26 21:11:32] 2025-11-27 02:10:30,146 | INFO     | did not find any defunct processes belonging to 15509
[2025-11-26 21:11:32] 2025-11-27 02:10:30,149 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:11:32] 2025-11-27 02:10:30,149 | INFO     | ready for new job
[2025-11-26 21:11:32] 2025-11-27 02:10:30,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:11:32] 2025-11-27 02:10:30,152 | INFO     | ***************************************
[2025-11-26 21:11:32] 2025-11-27 02:10:30,152 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:11:32] 2025-11-27 02:10:30,152 | INFO     | ***************************************
[2025-11-26 21:11:32] 2025-11-27 02:10:30,152 | INFO     | 
[2025-11-26 21:11:32] 2025-11-27 02:10:30,153 | INFO     | architecture information:
[2025-11-26 21:11:32] 2025-11-27 02:10:30,153 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:11:32] 2025-11-27 02:10:30,169 | INFO     | cat /etc/os-release:
[2025-11-26 21:11:32] NAME="CentOS Linux"
[2025-11-26 21:11:32] VERSION="7 (Core)"
[2025-11-26 21:11:32] ID="centos"
[2025-11-26 21:11:32] ID_LIKE="rhel fedora"
[2025-11-26 21:11:32] VERSION_ID="7"
[2025-11-26 21:11:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:11:32] ANSI_COLOR="0;31"
[2025-11-26 21:11:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:11:32] HOME_URL="https://www.centos.org/"
[2025-11-26 21:11:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:11:32] 
[2025-11-26 21:11:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:11:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:11:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:11:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:11:32] 
[2025-11-26 21:11:32] 2025-11-27 02:10:30,169 | INFO     | ***************************************
[2025-11-26 21:11:32] 2025-11-27 02:10:30,672 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 21:11:32] 2025-11-27 02:10:30,689 | INFO     | sufficient remaining disk space (28232908800 B)
[2025-11-26 21:11:32] 2025-11-27 02:10:30,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:11:32] 2025-11-27 02:10:30,690 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:11:32] 2025-11-27 02:10:30,690 | INFO     | update_server=False
[2025-11-26 21:11:32] 2025-11-27 02:10:30,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:11:32] 2025-11-27 02:10:30,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:11:32] 2025-11-27 02:10:30,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:11:32] 2025-11-27 02:10:30,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:11:32] 2025-11-27 02:10:30,693 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:11:32] 2025-11-27 02:10:30,693 | INFO     | aborting loop
[2025-11-26 21:11:32] 2025-11-27 02:10:31,163 | INFO     | all data control threads have been joined
[2025-11-26 21:11:32] 2025-11-27 02:10:31,354 | INFO     | all payload control threads have been joined
[2025-11-26 21:11:32] 2025-11-27 02:10:31,376 | INFO     | all job control threads have been joined
[2025-11-26 21:11:32] 2025-11-27 02:10:31,695 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:31,696 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:31,698 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:31,719 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:32,169 | INFO     | [data] control thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:32,212 | INFO     | [job] validate thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:32,271 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:32,355 | INFO     | [payload] control thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:32,382 | INFO     | [job] control thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:32,552 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:32,697 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:32,964 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:33,002 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:33,161 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:33,193 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:10:34,697 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:11:32] 2025-11-27 02:11:01,291 | INFO     | PID=8946 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 21:11:32] 2025-11-27 02:11:01,291 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:11:32] 2025-11-27 02:11:01,291 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:11:32] 2025-11-27 02:11:01,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:11:32] 2025-11-27 02:11:27,477 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:11:32] 2025-11-27 02:11:27,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848031627072)>', '<ExcThread(monitor, started 139847113090816)>']
[2025-11-26 21:11:32] 2025-11-27 02:11:28,414 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:11:32] 2025-11-27 02:11:28,414 | INFO     | [monitor] control thread has ended
[2025-11-26 21:11:32] 2025-11-27 02:11:32,616 | INFO     | all workflow threads have been joined
[2025-11-26 21:11:32] 2025-11-27 02:11:32,623 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:11:32] 2025-11-27 02:11:32,623 | INFO     | traces error code: 0
[2025-11-26 21:11:32] 2025-11-27 02:11:32,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:11:32] 2025-11-27 02:11:32,717 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:11:32] 2025-11-27 02:11:32,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:11:32] 2025-11-27 02:11:32,725 [wrapper] pilotpid: 8946
[2025-11-26 21:11:32] 2025-11-27 02:11:32,728 [wrapper] Pilot exit status: 0
[2025-11-26 21:11:32] 2025-11-27 02:11:32,741 [wrapper] pandaids: 6897863834
[2025-11-26 21:11:32] 2025-11-27 02:11:32,790 [wrapper] cleanup supervisor_pilot 12509 8947
[2025-11-26 21:11:32] 2025-11-27 02:11:32,794 [wrapper] Test setup, not cleaning
[2025-11-26 21:11:32] 2025-11-27 02:11:32,798 [wrapper] apfmon messages muted
[2025-11-26 21:11:32] 2025-11-27 02:11:32,802 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:11:32] 2025-11-27 02:11:32,805 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:11:32]  *** Error codes and diagnostics ***
[2025-11-26 21:11:32]     "exeErrorCode": 0,
[2025-11-26 21:11:32]     "exeErrorDiag": "",
[2025-11-26 21:11:32]     "pilotErrorCode": 0,
[2025-11-26 21:11:32]     "pilotErrorDiag": "",
[2025-11-26 21:11:32]  *** Listing of results directory ***
[2025-11-26 21:11:32] total 1326648
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 21:11:32] -rwx------ 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas       100 Nov 26 13:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:11:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 13:59 run_atlas
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas       105 Nov 26 13:59 job.xml
[2025-11-26 21:11:32] -rw-r--r-- 2 boincer umatlas 409995604 Nov 26 13:59 EVNT.47483658._002333.pool.root.1
[2025-11-26 21:11:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 13:59 start_atlas.sh
[2025-11-26 21:11:32] drwxrwx--x 2 boincer umatlas      4096 Nov 26 13:59 shared
[2025-11-26 21:11:32] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 13:59 input.tar.gz
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas         0 Nov 26 13:59 boinc_lockfile
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas      2786 Nov 26 13:59 pandaJob.out
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas        57 Nov 26 13:59 setup.sh.local
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas    991522 Nov 26 13:59 agis_schedconf.cvmfs.json
[2025-11-26 21:11:32] drwx------ 5 boincer umatlas      4096 Nov 26 13:59 pilot3
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas       532 Nov 26 21:01 boinc_task_state.xml
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas      5956 Nov 26 21:09 init_data.xml
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas 932953667 Nov 26 21:09 HITS.47556161._003154.pool.root.1
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas        95 Nov 26 21:10 pilot_heartbeat.json
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas      1064 Nov 26 21:10 memory_monitor_summary.json
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas   1516240 Nov 26 21:10 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas   2182165 Nov 26 21:10 log.47556161._003154.job.log.tgz.1
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas      8680 Nov 26 21:10 heartbeat.json
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 21:11 boinc_mmap_file
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas        29 Nov 26 21:11 wrapper_checkpoint.txt
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas      4745 Nov 26 21:11 pilotlog.txt
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas   3627121 Nov 26 21:11 log.47556161._003154.job.log.1
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas       353 Nov 26 21:11 output.list
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas       620 Nov 26 21:11 runtime_log
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas   5826560 Nov 26 21:11 result.tar.gz
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 21:11 runtime_log.err
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas       670 Nov 26 21:11 amMKDmYbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbdMKDmUzAIpm.diag
[2025-11-26 21:11:32] -rw-r--r-- 1 boincer umatlas     21317 Nov 26 21:11 stderr.txt
[2025-11-26 21:11:32] HITS file was successfully produced:
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas 932953667 Nov 26 21:09 shared/HITS.pool.root.1
[2025-11-26 21:11:32]  *** Contents of shared directory: ***
[2025-11-26 21:11:32] total 1317772
[2025-11-26 21:11:32] -rw-r--r-- 2 boincer umatlas 409995604 Nov 26 13:59 ATLAS.root_0
[2025-11-26 21:11:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 13:59 start_atlas.sh
[2025-11-26 21:11:32] -rw-r--r-- 2 boincer umatlas    590104 Nov 26 13:59 input.tar.gz
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas 932953667 Nov 26 21:09 HITS.pool.root.1
[2025-11-26 21:11:32] -rw------- 1 boincer umatlas   5826560 Nov 26 21:11 result.tar.gz
21:11:34 (5267): run_atlas exited; CPU time 289549.500892
21:11:34 (5267): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN