Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 20:46:53 (3904): vboxwrapper version 26210
2025-11-26 20:46:53 (3904): BOINC client version: 8.0.2
2025-11-26 20:46:54 (3904): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-26 20:46:54 (3904): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 20:46:54 (3904): Create VM. (boinc_d7f2320dbbf7c44d, slot#3)
2025-11-26 20:46:55 (3904): Setting Memory Size for VM. (4700MB)
2025-11-26 20:46:55 (3904): Setting CPU Count for VM. (7)
2025-11-26 20:46:56 (3904): Setting Chipset Options for VM.
2025-11-26 20:46:56 (3904): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 20:46:56 (3904): Setting Boot Options for VM.
2025-11-26 20:46:57 (3904): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 20:46:57 (3904): Enabling VM Network Access.
2025-11-26 20:46:57 (3904): Disabling USB Support for VM.
2025-11-26 20:46:57 (3904): Disabling COM Port Support for VM.
2025-11-26 20:46:58 (3904): Disabling LPT Port Support for VM.
2025-11-26 20:46:58 (3904): Disabling Audio Support for VM.
2025-11-26 20:46:58 (3904): Disabling Clipboard Support for VM.
2025-11-26 20:46:58 (3904): Disabling Drag and Drop Support for VM.
2025-11-26 20:46:59 (3904): Adding storage controller(s) to VM.
2025-11-26 20:46:59 (3904): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 20:46:59 (3904): Adding VirtualBox Guest Additions to VM.
2025-11-26 20:47:00 (3904): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 20:47:00 (3904): forwarding host port 63676 to guest port 80
2025-11-26 20:47:00 (3904): Enabling remote desktop for VM.
2025-11-26 20:47:00 (3904): Required extension pack not installed, remote desktop not enabled.
2025-11-26 20:47:00 (3904): Enabling shared directory for VM.
2025-11-26 20:47:01 (3904): Starting VM using VBoxManage interface. (boinc_d7f2320dbbf7c44d, slot#3)
2025-11-26 20:47:05 (3904): Successfully started VM. (PID = '2076')
2025-11-26 20:47:05 (3904): Reporting VM Process ID to BOINC.
2025-11-26 20:47:05 (3904): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-26 20:47:05 (3904): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 20:47:05 (3904): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 20:47:05 (3904): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 20:47:05 (3904): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 20:47:05 (3904): Detected: Web Application Enabled (http://localhost:63676)
2025-11-26 20:47:05 (3904): Preference change detected
2025-11-26 20:47:05 (3904): Setting CPU throttle for VM. (100%)
2025-11-26 20:47:05 (3904): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 20:47:07 (3904): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 20:47:08 (3904): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 20:47:10 (3904): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 20:47:10 (3904): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 20:47:10 (3904): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 20:47:15 (3904): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 20:47:15 (3904): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-26 20:47:20 (3904): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 20:47:20 (3904): Guest Log: 00:00:00.000148 main     Log opened 2025-11-26T20:47:19.935839000Z
2025-11-26 20:47:20 (3904): Guest Log: 00:00:00.000224 main     OS Product: Linux
2025-11-26 20:47:20 (3904): Guest Log: 00:00:00.000242 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 20:47:20 (3904): Guest Log: 00:00:00.000256 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 20:47:20 (3904): Guest Log: 00:00:00.000271 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 20:47:20 (3904): Guest Log: 00:00:00.000272 main     Process ID: 1355
2025-11-26 20:47:20 (3904): Guest Log: 00:00:00.000272 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 20:47:20 (3904): Guest Log: 00:00:00.000845 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 20:47:20 (3904): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 20:47:20 (3904): Guest Log: [INFO] Mounting shared directory
2025-11-26 20:47:20 (3904): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 20:47:23 (3904): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 20:47:23 (3904): Guest Log: [INFO] Detected branch: prod
2025-11-26 20:47:23 (3904): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 20:47:23 (3904): Guest Log: Copying input files
2025-11-26 20:47:25 (3904): Guest Log: Copied input files into RunAtlas.
2025-11-26 20:47:25 (3904): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 20:47:25 (3904): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 20:47:25 (3904): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 20:47:25 (3904): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 20:47:29 (3904): Guest Log: 00:00:10.020188 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 590 014 065 000ns (GuestNow=1 764 186 449 924 893 000 ns GuestLast=1 764 190 039 938 958 000 ns fSetTimeLastLoop=true )
2025-11-26 20:47:32 (3904): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 20:47:32 (3904): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 20:47:32 (3904): Guest Log: 2.6.3.0 1630 0 32184 153333 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 20:47:33 (3904): Guest Log: copied the webapp to /var/www
2025-11-26 20:47:33 (3904): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-26 20:47:33 (3904): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-26 20:47:33 (3904): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 20:47:33 (3904): Guest Log:  *** Starting ATLAS job. (PandaID=6897863619 taskID=47556161) ***
2025-11-26 22:27:07 (3904): Status Report: Elapsed Time: '6000.000000'
2025-11-26 22:27:07 (3904): Status Report: CPU Time: '39104.156250'
2025-11-27 00:07:10 (3904): Status Report: Elapsed Time: '12000.000000'
2025-11-27 00:07:10 (3904): Status Report: CPU Time: '80579.781250'
2025-11-27 01:47:12 (3904): Status Report: Elapsed Time: '18000.000000'
2025-11-27 01:47:12 (3904): Status Report: CPU Time: '122200.031250'
2025-11-27 03:27:15 (3904): Status Report: Elapsed Time: '24000.000000'
2025-11-27 03:27:15 (3904): Status Report: CPU Time: '163842.781250'
2025-11-27 05:07:17 (3904): Status Report: Elapsed Time: '30000.000000'
2025-11-27 05:07:17 (3904): Status Report: CPU Time: '205494.156250'
2025-11-27 05:19:33 (3904): Guest Log:  *** Job finished ***
2025-11-27 05:19:33 (3904): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:11,605 | INFO     | all workflow threads have been joined
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:11,605 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:11,605 | INFO     | traces error code: 0
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:11,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:24,896 | INFO     | PID=6054 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:24,896 | INFO     | found 0 job(s) in 20 queues
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:24,896 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:24,896 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:24,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:24,896 | INFO     | [monitor] control thread has ended
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,011 [wrapper] ==== pilot stdout END ====
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,015 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,018 [wrapper] pilotpid: 6054
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,021 [wrapper] Pilot exit status: 0
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,034 [wrapper] pandaids: 6897863619
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,057 [wrapper] cleanup supervisor_pilot 10984 6055
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,061 [wrapper] Test setup, not cleaning
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,065 [wrapper] apfmon messages muted
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,068 [wrapper] ==== wrapper stdout END ====
2025-11-27 05:19:33 (3904): Guest Log: 2025-11-27 04:29:25,072 [wrapper] ==== wrapper stderr END ====
2025-11-27 05:19:33 (3904): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 05:19:33 (3904): Guest Log:     "exeErrorCode": 0,
2025-11-27 05:19:33 (3904): Guest Log:     "exeErrorDiag": "",
2025-11-27 05:19:33 (3904): Guest Log:     "pilotErrorCode": 0,
2025-11-27 05:19:33 (3904): Guest Log:     "pilotErrorDiag": "",
2025-11-27 05:19:33 (3904): Guest Log:  *** Listing of results directory ***
2025-11-27 05:19:33 (3904): Guest Log: total 906552
2025-11-27 05:19:33 (3904): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 25 16:48 pilot3.tar.gz
2025-11-27 05:19:33 (3904): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 25 17:01 runpilot2-wrapper.sh
2025-11-27 05:19:33 (3904): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 25 17:02 queuedata.json
2025-11-27 05:19:33 (3904): Guest Log: -rwxr-xr-x. 1 atlas atlas    590105 Nov 26 19:47 input.tar.gz
2025-11-27 05:19:33 (3904): Guest Log: -rwxr-xr-x. 1 atlas atlas      9128 Nov 26 19:47 init_data.xml
2025-11-27 05:19:33 (3904): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 19:47 start_atlas.sh
2025-11-27 05:19:33 (3904): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 19:47 EVNT.47483658._002327.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 05:19:33 (3904): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 26 19:47 pandaJob.out
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas    991522 Nov 26 19:48 agis_schedconf.cvmfs.json
2025-11-27 05:19:33 (3904): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 19:48 pilot3
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas 912709689 Nov 27 04:28 HITS.47556161._003098.pool.root.1
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas      1040 Nov 27 04:28 memory_monitor_summary.json
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 04:28 agis_ddmendpoints.agis.ALL.json
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas   1675581 Nov 27 04:28 log.47556161._003098.job.log.tgz.1
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas      8637 Nov 27 04:28 heartbeat.json
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 04:29 pilot_heartbeat.json
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 04:29 pilotlog.txt
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas   4198784 Nov 27 04:29 log.47556161._003098.job.log.1
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 04:29 output.list
2025-11-27 05:19:33 (3904): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 04:29 runtime_log
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas   5898240 Nov 27 04:29 result.tar.gz
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas       660 Nov 27 04:29 wddNDmXbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtcMKDmA6vIwm.diag
2025-11-27 05:19:33 (3904): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 27 04:29 runtime_log.err
2025-11-27 05:19:33 (3904): Guest Log: Looking for outputfile HITS.47556161._003098.pool.root.1
2025-11-27 05:19:33 (3904): Guest Log: HITS file was successfully produced
2025-11-27 05:19:33 (3904): Guest Log: -rw-------. 1 atlas atlas 912709689 Nov 27 04:28 /home/atlas/RunAtlas/HITS.47556161._003098.pool.root.1
2025-11-27 05:19:36 (3904): Guest Log: Successfully finished the ATLAS job!
2025-11-27 05:19:36 (3904): Guest Log: Copying the results back to the shared directory!
2025-11-27 05:19:36 (3904): Guest Log:  *** Contents of shared directory: ***
2025-11-27 05:19:36 (3904): Guest Log: total 1296108
2025-11-27 05:19:36 (3904): Guest Log: -rwxrwxrwx. 1 root root 407979321 Nov 26 19:46 ATLAS.root_0
2025-11-27 05:19:36 (3904): Guest Log: -rwxrwxrwx. 1 root root 912709689 Nov 27 04:19 HITS.pool.root.1
2025-11-27 05:19:36 (3904): Guest Log: -rwxrwxrwx. 1 root root      9128 Nov 26 19:46 init_data.xml
2025-11-27 05:19:36 (3904): Guest Log: -rwxrwxrwx. 1 root root    590105 Nov 26 18:53 input.tar.gz
2025-11-27 05:19:36 (3904): Guest Log: -rwxrwxrwx. 1 root root   5898240 Nov 27 04:19 result.tar.gz
2025-11-27 05:19:36 (3904): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 18:53 start_atlas.sh
2025-11-27 05:19:36 (3904): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 05:19:37 (3904): VM Completion File Detected.
2025-11-27 05:19:37 (3904): Powering off VM.
2025-11-27 05:19:38 (3904): Successfully stopped VM.
2025-11-27 05:19:38 (3904): Deregistering VM. (boinc_d7f2320dbbf7c44d, slot#3)
2025-11-27 05:19:38 (3904): Removing network bandwidth throttle group from VM.
2025-11-27 05:19:38 (3904): Removing VM from VirtualBox.
2025-11-27 05:19:43 (3904): called boinc_finish(0)

</stderr_txt>
]]>

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