Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 13:36:39 (14740): vboxwrapper version 26210
2025-11-26 13:36:39 (14740): BOINC client version: 8.2.7
2025-11-26 13:36:39 (14740): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-26 13:36:40 (14740): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 13:36:40 (14740): Create VM. (boinc_3912adc0e3df1f6a, slot#7)
2025-11-26 13:36:41 (14740): Setting Memory Size for VM. (4400MB)
2025-11-26 13:36:41 (14740): Setting CPU Count for VM. (4)
2025-11-26 13:36:41 (14740): Setting Chipset Options for VM.
2025-11-26 13:36:42 (14740): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 13:36:42 (14740): Setting Boot Options for VM.
2025-11-26 13:36:43 (14740): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 13:36:43 (14740): Enabling VM Network Access.
2025-11-26 13:36:43 (14740): Disabling USB Support for VM.
2025-11-26 13:36:44 (14740): Disabling COM Port Support for VM.
2025-11-26 13:36:44 (14740): Disabling LPT Port Support for VM.
2025-11-26 13:36:44 (14740): Disabling Audio Support for VM.
2025-11-26 13:36:44 (14740): Disabling Clipboard Support for VM.
2025-11-26 13:36:45 (14740): Disabling Drag and Drop Support for VM.
2025-11-26 13:36:45 (14740): Adding storage controller(s) to VM.
2025-11-26 13:36:45 (14740): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 13:36:46 (14740): Adding VirtualBox Guest Additions to VM.
2025-11-26 13:36:46 (14740): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 13:36:46 (14740): forwarding host port 55818 to guest port 80
2025-11-26 13:36:46 (14740): Enabling remote desktop for VM.
2025-11-26 13:36:47 (14740): Enabling shared directory for VM.
2025-11-26 13:36:48 (14740): Starting VM using VBoxManage interface. (boinc_3912adc0e3df1f6a, slot#7)
2025-11-26 13:36:53 (14740): Successfully started VM. (PID = '6052')
2025-11-26 13:36:53 (14740): Reporting VM Process ID to BOINC.
2025-11-26 13:36:53 (14740): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-26 13:36:53 (14740): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 13:36:53 (14740): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 13:36:53 (14740): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 13:36:53 (14740): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 13:36:53 (14740): Detected: Web Application Enabled (http://localhost:55818)
2025-11-26 13:36:53 (14740): Detected: Remote Desktop Enabled (localhost:55819)
2025-11-26 13:36:53 (14740): Preference change detected
2025-11-26 13:36:53 (14740): Setting CPU throttle for VM. (100%)
2025-11-26 13:36:53 (14740): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 13:36:55 (14740): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 13:36:55 (14740): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 13:36:58 (14740): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 13:36:58 (14740): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 13:36:58 (14740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 13:37:06 (14740): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 13:37:06 (14740): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 13:37:19 (14740): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 13:37:19 (14740): Guest Log: 00:00:00.000157 main     Log opened 2025-11-26T13:37:17.506534000Z
2025-11-26 13:37:19 (14740): Guest Log: 00:00:00.000241 main     OS Product: Linux
2025-11-26 13:37:19 (14740): Guest Log: 00:00:00.000268 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 13:37:19 (14740): Guest Log: 00:00:00.000290 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 13:37:19 (14740): Guest Log: 00:00:00.000343 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 13:37:19 (14740): Guest Log: 00:00:00.000343 main     Process ID: 1310
2025-11-26 13:37:19 (14740): Guest Log: 00:00:00.000344 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 13:37:19 (14740): Guest Log: 00:00:00.001177 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 13:37:19 (14740): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 13:37:19 (14740): Guest Log: [INFO] Mounting shared directory
2025-11-26 13:37:19 (14740): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 13:37:24 (14740): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 13:37:24 (14740): Guest Log: [INFO] Detected branch: prod
2025-11-26 13:37:24 (14740): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 13:37:24 (14740): Guest Log: Copying input files
2025-11-26 13:37:28 (14740): Guest Log: Copied input files into RunAtlas.
2025-11-26 13:37:28 (14740): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 13:37:28 (14740): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 13:37:28 (14740): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 13:37:28 (14740): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 13:37:29 (14740): Guest Log: 00:00:10.003889 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 010 925 852 000ns (GuestNow=1 764 182 248 435 539 000 ns GuestLast=1 764 164 237 509 687 000 ns fSetTimeLastLoop=true )
2025-11-26 13:37:43 (14740): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 13:37:43 (14740): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 13:37:43 (14740): Guest Log: 2.6.3.0 1588 0 32160 153331 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 13:37:46 (14740): Guest Log: copied the webapp to /var/www
2025-11-26 13:37:46 (14740): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-26 13:37:46 (14740): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-26 13:37:47 (14740): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 13:37:47 (14740): Guest Log:  *** Starting ATLAS job. (PandaID=6897531600 taskID=47556161) ***
2025-11-26 15:16:56 (14740): Status Report: Elapsed Time: '6000.000000'
2025-11-26 15:16:56 (14740): Status Report: CPU Time: '21060.953125'
2025-11-26 16:56:58 (14740): Status Report: Elapsed Time: '12000.000000'
2025-11-26 16:56:58 (14740): Status Report: CPU Time: '44834.250000'
2025-11-26 18:37:01 (14740): Status Report: Elapsed Time: '18000.000000'
2025-11-26 18:37:01 (14740): Status Report: CPU Time: '68655.828125'
2025-11-26 20:17:04 (14740): Status Report: Elapsed Time: '24000.000000'
2025-11-26 20:17:04 (14740): Status Report: CPU Time: '92530.687500'
2025-11-26 21:57:07 (14740): Status Report: Elapsed Time: '30000.000000'
2025-11-26 21:57:07 (14740): Status Report: CPU Time: '116391.781250'
2025-11-26 23:37:09 (14740): Status Report: Elapsed Time: '36000.000000'
2025-11-26 23:37:09 (14740): Status Report: CPU Time: '140279.578125'
2025-11-27 01:05:59 (14740): VM state change detected. (old = 'running', new = 'paused')
2025-11-27 01:37:36 (14740): Guest Log: 11:28:25.766903 timesync vgsvcTimeSyncWorker: Radical host time change: 1 900 136 000 000ns (HostNow=1 764 225 426 736 000 000 ns HostLast=1 764 223 526 600 000 000 ns)
2025-11-27 01:37:36 (14740): VM state change detected. (old = 'paused', new = 'running')
2025-11-27 01:37:46 (14740): Guest Log: 11:28:35.772312 timesync vgsvcTimeSyncWorker: Radical guest time change: 1 892 542 958 000ns (GuestNow=1 764 225 436 741 473 000 ns GuestLast=1 764 223 544 198 515 000 ns fSetTimeLastLoop=true )
2025-11-27 01:48:50 (14740): Status Report: Elapsed Time: '42000.000000'
2025-11-27 01:48:50 (14740): Status Report: CPU Time: '164146.656250'
2025-11-27 03:28:53 (14740): Status Report: Elapsed Time: '48000.000000'
2025-11-27 03:28:53 (14740): Status Report: CPU Time: '188023.843750'
2025-11-27 05:08:56 (14740): Status Report: Elapsed Time: '54000.000000'
2025-11-27 05:08:56 (14740): Status Report: CPU Time: '211874.265625'
2025-11-27 06:25:07 (14740): Guest Log:  *** Job finished ***
2025-11-27 06:25:07 (14740): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:12,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:12,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:30,766 | INFO     | [monitor] cgroup control has ended
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:31,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140279176820544)>', '<ExcThread(monitor, started 140278430152448)>']
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:32,745 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:32,745 | INFO     | [monitor] control thread has ended
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:36,809 | INFO     | all workflow threads have been joined
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:36,809 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:36,809 | INFO     | traces error code: 0
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:36,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,043 [wrapper] ==== pilot stdout END ====
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,047 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,051 [wrapper] pilotpid: 5991
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,055 [wrapper] Pilot exit status: 0
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,107 [wrapper] pandaids: 6897531600
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,135 [wrapper] cleanup supervisor_pilot 21920 5992
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,139 [wrapper] Test setup, not cleaning
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,145 [wrapper] apfmon messages muted
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,150 [wrapper] ==== wrapper stdout END ====
2025-11-27 06:25:08 (14740): Guest Log: 2025-11-27 11:24:37,154 [wrapper] ==== wrapper stderr END ====
2025-11-27 06:25:08 (14740): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 06:25:08 (14740): Guest Log:     "exeErrorCode": 0,
2025-11-27 06:25:08 (14740): Guest Log:     "exeErrorDiag": "",
2025-11-27 06:25:08 (14740): Guest Log:     "pilotErrorCode": 0,
2025-11-27 06:25:08 (14740): Guest Log:     "pilotErrorDiag": "",
2025-11-27 06:25:08 (14740): Guest Log:  *** Listing of results directory ***
2025-11-27 06:25:08 (14740): Guest Log: total 915704
2025-11-27 06:25:08 (14740): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 25 16:48 pilot3.tar.gz
2025-11-27 06:25:08 (14740): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 25 17:01 runpilot2-wrapper.sh
2025-11-27 06:25:08 (14740): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 25 17:02 queuedata.json
2025-11-27 06:25:08 (14740): Guest Log: -rwxr-xr-x. 1 atlas atlas      8486 Nov 26 18:37 init_data.xml
2025-11-27 06:25:08 (14740): Guest Log: -rwxr-xr-x. 1 atlas atlas    590106 Nov 26 18:37 input.tar.gz
2025-11-27 06:25:08 (14740): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 18:37 start_atlas.sh
2025-11-27 06:25:08 (14740): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 18:37 EVNT.47483658._002305.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 06:25:08 (14740): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 26 18:37 pandaJob.out
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas    991522 Nov 26 18:38 agis_schedconf.cvmfs.json
2025-11-27 06:25:08 (14740): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 18:39 pilot3
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas 914948888 Nov 27 11:23 HITS.47556161._002885.pool.root.1
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas      1035 Nov 27 11:23 memory_monitor_summary.json
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 11:23 agis_ddmendpoints.agis.ALL.json
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas   1675407 Nov 27 11:23 log.47556161._002885.job.log.tgz.1
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas      8631 Nov 27 11:23 heartbeat.json
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas        97 Nov 27 11:24 pilot_heartbeat.json
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 27 11:24 pilotlog.txt
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas   7765521 Nov 27 11:24 log.47556161._002885.job.log.1
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 11:24 output.list
2025-11-27 06:25:08 (14740): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 11:24 runtime_log
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas   9461760 Nov 27 11:24 result.tar.gz
2025-11-27 06:25:08 (14740): Guest Log: -rw-r--r--. 1 atlas atlas      8744 Nov 27 11:24 runtime_log.err
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas       660 Nov 27 11:24 J6vKDmKbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkbMKDmSmeiEn.diag
2025-11-27 06:25:08 (14740): Guest Log: Looking for outputfile HITS.47556161._002885.pool.root.1
2025-11-27 06:25:08 (14740): Guest Log: HITS file was successfully produced
2025-11-27 06:25:08 (14740): Guest Log: -rw-------. 1 atlas atlas 914948888 Nov 27 11:23 /home/atlas/RunAtlas/HITS.47556161._002885.pool.root.1
2025-11-27 06:25:22 (14740): Guest Log: Successfully finished the ATLAS job!
2025-11-27 06:25:22 (14740): Guest Log: Copying the results back to the shared directory!
2025-11-27 06:25:22 (14740): Guest Log:  *** Contents of shared directory: ***
2025-11-27 06:25:23 (14740): Guest Log: total 1303680
2025-11-27 06:25:23 (14740): Guest Log: -rwxrwxrwx. 1 root root 409929055 Nov 26 18:36 ATLAS.root_0
2025-11-27 06:25:23 (14740): Guest Log: -rwxrwxrwx. 1 root root 914948888 Nov 27  2025 HITS.pool.root.1
2025-11-27 06:25:23 (14740): Guest Log: -rwxrwxrwx. 1 root root      8486 Nov 26 18:36 init_data.xml
2025-11-27 06:25:23 (14740): Guest Log: -rwxrwxrwx. 1 root root    590106 Nov 26 18:31 input.tar.gz
2025-11-27 06:25:23 (14740): Guest Log: -rwxrwxrwx. 1 root root   9461760 Nov 27  2025 result.tar.gz
2025-11-27 06:25:23 (14740): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 18:31 start_atlas.sh
2025-11-27 06:25:23 (14740): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 06:25:23 (14740): VM Completion File Detected.
2025-11-27 06:25:23 (14740): Powering off VM.
2025-11-27 06:25:26 (14740): Successfully stopped VM.
2025-11-27 06:25:26 (14740): Deregistering VM. (boinc_3912adc0e3df1f6a, slot#7)
2025-11-27 06:25:26 (14740): Removing network bandwidth throttle group from VM.
2025-11-27 06:25:26 (14740): Removing VM from VirtualBox.
2025-11-27 06:25:38 (14740): called boinc_finish(0)

</stderr_txt>
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