Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:01:39 (884674): wrapper (7.7.26015): starting
15:01:39 (884674): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:01:39] Arguments: --nthreads 8
[2025-11-26 15:01:39] Threads: 8
[2025-11-26 15:01:39] Checking for CVMFS
[2025-11-26 15:01:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:01:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:01:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:01:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:01:40] 2.13.3.0 11883 30368 382832 153333 2 712 21476132 32935936 40794 16776704 0 156508515 99.603 169825062 33893 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 15:01:40] CVMFS is ok
[2025-11-26 15:01:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:01:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:01:40] Further information can be found at the LHC@home message board.
[2025-11-26 15:01:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:01:40] Checking for apptainer binary...
[2025-11-26 15:01:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:01:40] Running /usr/bin/apptainer --version
[2025-11-26 15:01:41] apptainer version 1.4.4-1.el9
[2025-11-26 15:01:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:01:42] c6-12-29-2.aglt2.org
[2025-11-26 15:01:42] apptainer works
[2025-11-26 15:01:42] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:01:42] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:01:42] Starting ATLAS job with PandaID=6897510708
[2025-11-26 15:01:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:17:13]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:17:13] 2025-11-28 02:16:19,696 | INFO     | time since job start (108838s) is within the limit (172800.0s)
[2025-11-27 21:17:13] 2025-11-28 02:16:21,706 | INFO     | time since job start (108840s) is within the limit (172800.0s)
[2025-11-27 21:17:13] 2025-11-28 02:16:21,751 | INFO     | monitor loop #5834: job 0:6897510708 is in state 'finished'
[2025-11-27 21:17:13] 2025-11-28 02:16:21,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:17:13] 2025-11-28 02:16:23,713 | INFO     | time since job start (108842s) is within the limit (172800.0s)
[2025-11-27 21:17:13] 2025-11-28 02:16:24,283 | INFO     | monitor loop #5835: job 0:6897510708 is in state 'finished'
[2025-11-27 21:17:13] 2025-11-28 02:16:24,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:17:13] 2025-11-28 02:16:25,722 | INFO     | time since job start (108844s) is within the limit (172800.0s)
[2025-11-27 21:17:13] 2025-11-28 02:16:26,831 | INFO     | monitor loop #5836: job 0:6897510708 is in state 'finished'
[2025-11-27 21:17:13] 2025-11-28 02:16:26,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:17:13] 2025-11-28 02:16:28,619 | INFO     | PID=893075 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 21:17:13] 2025-11-28 02:16:28,621 | INFO     | .. there are 60 such processes running
[2025-11-27 21:17:13] 2025-11-28 02:16:29,336 | INFO     | monitor loop #5837: job 0:6897510708 is in state 'finished'
[2025-11-27 21:17:13] 2025-11-28 02:16:29,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:17:13] 2025-11-28 02:16:29,623 | INFO     | time since job start (108848s) is within the limit (172800.0s)
[2025-11-27 21:17:13] 2025-11-28 02:16:30,413 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 21:17:13] 2025-11-28 02:16:30,509 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2620.6243749999994
[2025-11-27 21:17:13] 2025-11-28 02:16:30,599 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897510708/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:17:13] 2025-11-28 02:16:30,623 | INFO     | extracted standard info from prmon json
[2025-11-27 21:17:13] 2025-11-28 02:16:30,623 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:17:13] 2025-11-28 02:16:30,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:17:13] 2025-11-28 02:16:30,675 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:17:13] 2025-11-28 02:16:30,677 | INFO     | sum of square deviations: 1754750401383.1316
[2025-11-27 21:17:13] 2025-11-28 02:16:30,747 | INFO     | sum of deviations: 5180504176559.795
[2025-11-27 21:17:13] 2025-11-28 02:16:30,748 | INFO     | mean x: 1764241752.046577
[2025-11-27 21:17:13] 2025-11-28 02:16:30,748 | INFO     | mean y: 2925558.231200898
[2025-11-27 21:17:13] 2025-11-28 02:16:30,748 | INFO     | intersect: -5205599687.145227
[2025-11-27 21:17:13] 2025-11-28 02:16:30,756 | INFO     | chi2: 24.304699519773905
[2025-11-27 21:17:13] 2025-11-28 02:16:30,764 | INFO     | sum of square deviations: 1740023034863.1165
[2025-11-27 21:17:13] 2025-11-28 02:16:31,142 | INFO     | sum of deviations: 5805373906877.497
[2025-11-27 21:17:13] 2025-11-28 02:16:31,143 | INFO     | mean x: 1764241599.5537422
[2025-11-27 21:17:13] 2025-11-28 02:16:31,143 | INFO     | mean y: 2932027.083849184
[2025-11-27 21:17:13] 2025-11-28 02:16:31,143 | INFO     | intersect: -5883244156.947435
[2025-11-27 21:17:13] 2025-11-28 02:16:31,145 | INFO     | chi2: 20.78845142503139
[2025-11-27 21:17:13] 2025-11-28 02:16:31,145 | INFO     | current chi2=20.78845142503139 (change=14.46735884095894 %)
[2025-11-27 21:17:13] 2025-11-28 02:16:31,145 | INFO     | right removable region: 1776
[2025-11-27 21:17:13] 2025-11-28 02:16:31,160 | INFO     | sum of square deviations: 1740020266683.1165
[2025-11-27 21:17:13] 2025-11-28 02:16:31,248 | INFO     | sum of deviations: 4490742625661.474
[2025-11-27 21:17:13] 2025-11-28 02:16:31,249 | INFO     | mean x: 1764241904.5537422
[2025-11-27 21:17:13] 2025-11-28 02:16:31,249 | INFO     | mean y: 2932699.010692178
[2025-11-27 21:17:13] 2025-11-28 02:16:31,249 | INFO     | intersect: -4550322498.332663
[2025-11-27 21:17:13] 2025-11-28 02:16:31,251 | INFO     | chi2: 20.680804986779357
[2025-11-27 21:17:13] 2025-11-28 02:16:31,251 | INFO     | current chi2=20.680804986779357 (change=14.910262643017688 %)
[2025-11-27 21:17:13] 2025-11-28 02:16:31,252 | INFO     | left removable region: 10
[2025-11-27 21:17:13] 2025-11-28 02:16:31,254 | INFO     | sum of square deviations: 1707907902258.4336
[2025-11-27 21:17:13] 2025-11-28 02:16:31,384 | INFO     | sum of deviations: 4779034797030.833
[2025-11-27 21:17:13] 2025-11-28 02:16:31,384 | INFO     | mean x: 1764241874.069649
[2025-11-27 21:17:13] 2025-11-28 02:16:31,384 | INFO     | mean y: 2945040.5622876557
[2025-11-27 21:17:13] 2025-11-28 02:16:31,385 | INFO     | intersect: -4933722384.776401
[2025-11-27 21:17:13] 2025-11-28 02:16:31,387 | INFO     | chi2: 15.185189875308584
[2025-11-27 21:17:13] 2025-11-28 02:16:31,387 | INFO     | current memory leak: 2.80 B/s (using 1766 data points, chi2=15.19)
[2025-11-27 21:17:13] 2025-11-28 02:16:31,393 | INFO     | could have reported an average CPU frequency of 2646 MHz (63 samples)
[2025-11-27 21:17:13] 2025-11-28 02:16:31,393 | INFO     | ..............................
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | . Timing measurements:
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | . get job = 0 s
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | . initial setup = 3 s
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | . payload setup = 27 s
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | . stage-in = 0 s
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | . payload execution = 108709 s
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | . stage-out = 22 s
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | . log creation = 6 s
[2025-11-27 21:17:13] 2025-11-28 02:16:31,394 | INFO     | ..............................
[2025-11-27 21:17:13] 2025-11-28 02:16:31,687 | INFO     | time since job start (108850s) is within the limit (172800.0s)
[2025-11-27 21:17:13] 2025-11-28 02:16:32,152 | INFO     | 
[2025-11-27 21:17:13] 2025-11-28 02:16:32,152 | INFO     | job summary report
[2025-11-27 21:17:13] 2025-11-28 02:16:32,152 | INFO     | --------------------------------------------------
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | PanDA job id: 6897510708
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | task id: 47556161
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | errors: (none)
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | pilot state: finished 
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | transexitcode: 0
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | exeerrorcode: 0
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | exeerrordiag: 
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | exitcode: 0
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | exitmsg: OK
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | cpuconsumptiontime: 276766 s
[2025-11-27 21:17:13] 2025-11-28 02:16:32,153 | INFO     | nevents: 1000
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | neventsw: 0
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | pid: 902752
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | pgrp: 902752
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | corecount: 8
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | event service: False
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | sizes: {0: 2284038, 1: 2284293, 13: 2284293, 19: 2284611, 23: 2284639, 108740: 2358675, 108741: 2358802, 108765: 2367852, 108766: 2367908, 108809: 2368154}
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | --------------------------------------------------
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | 
[2025-11-27 21:17:13] 2025-11-28 02:16:32,154 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 21:17:13] 2025-11-28 02:16:32,212 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,212 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,212 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,212 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,213 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,214 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,214 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,214 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:17:13] 2025-11-28 02:16:32,214 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,214 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:17:13] 2025-11-28 02:16:32,214 | INFO     | job 6897510708 has completed (purged errors)
[2025-11-27 21:17:13] 2025-11-28 02:16:32,214 | INFO     | overall cleanup function is called
[2025-11-27 21:17:13] 2025-11-28 02:16:33,246 | INFO     | --- collectZombieJob: --- 10, [902752]
[2025-11-27 21:17:13] 2025-11-28 02:16:33,246 | INFO     | zombie collector waiting for pid 902752
[2025-11-27 21:17:13] 2025-11-28 02:16:33,246 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:17:13] 2025-11-28 02:16:33,246 | INFO     | collected zombie processes
[2025-11-27 21:17:13] 2025-11-28 02:16:33,247 | INFO     | will attempt to kill all subprocesses of pid=902752
[2025-11-27 21:17:13] 2025-11-28 02:16:34,271 | INFO     | process IDs to be killed: [902752] (in reverse order)
[2025-11-27 21:17:13] 2025-11-28 02:16:34,512 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:17:13] 2025-11-28 02:16:34,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:17:13] 2025-11-28 02:16:34,610 | INFO     | did not find any defunct processes belonging to 902752
[2025-11-27 21:17:13] 2025-11-28 02:16:34,730 | INFO     | did not find any defunct processes belonging to 902752
[2025-11-27 21:17:13] 2025-11-28 02:16:34,778 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:17:13] 2025-11-28 02:16:34,778 | INFO     | ready for new job
[2025-11-27 21:17:13] 2025-11-28 02:16:34,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:17:13] 2025-11-28 02:16:34,804 | INFO     | ***************************************
[2025-11-27 21:17:13] 2025-11-28 02:16:34,804 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:17:13] 2025-11-28 02:16:34,838 | INFO     | ***************************************
[2025-11-27 21:17:13] 2025-11-28 02:16:34,838 | INFO     | 
[2025-11-27 21:17:13] 2025-11-28 02:16:34,857 | INFO     | architecture information:
[2025-11-27 21:17:13] 2025-11-28 02:16:34,862 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:17:13] 2025-11-28 02:16:35,042 | INFO     | cat /etc/os-release:
[2025-11-27 21:17:13] NAME="CentOS Linux"
[2025-11-27 21:17:13] VERSION="7 (Core)"
[2025-11-27 21:17:13] ID="centos"
[2025-11-27 21:17:13] ID_LIKE="rhel fedora"
[2025-11-27 21:17:13] VERSION_ID="7"
[2025-11-27 21:17:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:17:13] ANSI_COLOR="0;31"
[2025-11-27 21:17:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:17:13] HOME_URL="https://www.centos.org/"
[2025-11-27 21:17:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:17:13] 
[2025-11-27 21:17:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:17:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:17:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:17:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:17:13] 
[2025-11-27 21:17:13] 2025-11-28 02:16:35,042 | INFO     | ***************************************
[2025-11-27 21:17:13] 2025-11-28 02:16:35,563 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 21:17:13] 2025-11-28 02:16:35,739 | INFO     | sufficient remaining disk space (85545975808 B)
[2025-11-27 21:17:13] 2025-11-28 02:16:35,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:17:13] 2025-11-28 02:16:35,740 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:17:13] 2025-11-28 02:16:35,740 | INFO     | update_server=False
[2025-11-27 21:17:13] 2025-11-28 02:16:35,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:17:13] 2025-11-28 02:16:35,740 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:17:13] 2025-11-28 02:16:35,740 | INFO     | aborting loop
[2025-11-27 21:17:13] 2025-11-28 02:16:36,006 | INFO     | all data control threads have been joined
[2025-11-27 21:17:13] 2025-11-28 02:16:36,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:17:13] 2025-11-28 02:16:36,181 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:17:13] 2025-11-28 02:16:36,585 | INFO     | all job control threads have been joined
[2025-11-27 21:17:13] 2025-11-28 02:16:36,688 | INFO     | all payload control threads have been joined
[2025-11-27 21:17:13] 2025-11-28 02:16:36,746 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:36,746 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:36,788 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:36,939 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:36,965 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:37,012 | INFO     | [data] control thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:37,072 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:37,115 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:37,136 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:37,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:17:13] 2025-11-28 02:16:37,425 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:37,591 | INFO     | [job] control thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:37,694 | INFO     | [payload] control thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:37,926 | INFO     | [job] validate thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:38,185 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:38,220 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:40,220 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:17:13] 2025-11-28 02:16:42,488 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:17:13] 2025-11-28 02:16:43,116 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967982446400)>', '<ExcThread(monitor, started 139967263135488)>']
[2025-11-27 21:17:13] 2025-11-28 02:16:48,142 | INFO     | all workflow threads have been joined
[2025-11-27 21:17:13] 2025-11-28 02:16:48,160 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:17:13] 2025-11-28 02:16:48,160 | INFO     | traces error code: 0
[2025-11-27 21:17:13] 2025-11-28 02:16:48,160 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:17:13] 2025-11-28 02:17:11,351 | INFO     | PID=893075 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 21:17:13] 2025-11-28 02:17:11,352 | INFO     | .. there are 60 such processes running
[2025-11-27 21:17:13] 2025-11-28 02:17:11,352 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:17:13] 2025-11-28 02:17:11,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:17:13] 2025-11-28 02:17:11,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:17:13] 2025-11-28 02:17:11,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:17:13] 2025-11-28 02:17:11,353 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 21:17:13] 2025-11-28 02:17:11,353 | INFO     | [monitor] control thread has ended
[2025-11-27 21:17:13] 2025-11-28 02:17:11,943 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:17:13] 2025-11-28 02:17:11,955 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:17:13] 2025-11-28 02:17:11,991 [wrapper] pilotpid: 893075
[2025-11-27 21:17:13] 2025-11-28 02:17:12,008 [wrapper] Pilot exit status: 0
[2025-11-27 21:17:13] 2025-11-28 02:17:12,122 [wrapper] pandaids: 6897510708
[2025-11-27 21:17:13] 2025-11-28 02:17:12,419 [wrapper] cleanup supervisor_pilot  347864 893076
[2025-11-27 21:17:13] 2025-11-28 02:17:12,462 [wrapper] Test setup, not cleaning
[2025-11-27 21:17:13] 2025-11-28 02:17:12,478 [wrapper] apfmon messages muted
[2025-11-27 21:17:13] 2025-11-28 02:17:12,499 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:17:13] 2025-11-28 02:17:12,519 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:17:13]  *** Error codes and diagnostics ***
[2025-11-27 21:17:13]     "exeErrorCode": 0,
[2025-11-27 21:17:13]     "exeErrorDiag": "",
[2025-11-27 21:17:13]     "pilotErrorCode": 0,
[2025-11-27 21:17:13]     "pilotErrorDiag": "",
[2025-11-27 21:17:13]  *** Listing of results directory ***
[2025-11-27 21:17:13] total 1342732
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 21:17:13] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas       100 Nov 26 15:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:17:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 15:01 run_atlas
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas       105 Nov 26 15:01 job.xml
[2025-11-27 21:17:13] -rw-r--r--. 2 boincer umatlas 412849791 Nov 26 15:01 EVNT.47483658._002294.pool.root.1
[2025-11-27 21:17:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:01 start_atlas.sh
[2025-11-27 21:17:13] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 15:01 shared
[2025-11-27 21:17:13] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 15:01 input.tar.gz
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas         0 Nov 26 15:01 boinc_lockfile
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 15:01 pandaJob.out
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas        57 Nov 26 15:01 setup.sh.local
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas    991522 Nov 26 15:02 agis_schedconf.cvmfs.json
[2025-11-27 21:17:13] drwx------. 5 boincer umatlas      4096 Nov 26 15:02 pilot3
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:30 boinc_task_state.xml
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 21:09 init_data.xml
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas 927305107 Nov 27 21:13 HITS.47556161._002780.pool.root.1
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas      1060 Nov 27 21:15 memory_monitor_summary.json
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas   1516240 Nov 27 21:15 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas   2658808 Nov 27 21:15 log.47556161._002780.job.log.tgz.1
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas      8631 Nov 27 21:16 heartbeat.json
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 21:17 boinc_mmap_file
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas        29 Nov 27 21:17 wrapper_checkpoint.txt
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas        95 Nov 27 21:17 pilot_heartbeat.json
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas       892 Nov 27 21:17 pilotlog.txt
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas  12779865 Nov 27 21:17 log.47556161._002780.job.log.1
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas       353 Nov 27 21:17 output.list
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas       620 Nov 27 21:17 runtime_log
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas  15462400 Nov 27 21:17 result.tar.gz
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas      9354 Nov 27 21:17 runtime_log.err
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas       665 Nov 27 21:17 MxpLDmJbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhgJKDmmUsqLo.diag
[2025-11-27 21:17:13] -rw-r--r--. 1 boincer umatlas     21842 Nov 27 21:17 stderr.txt
[2025-11-27 21:17:13] HITS file was successfully produced:
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas 927305107 Nov 27 21:13 shared/HITS.pool.root.1
[2025-11-27 21:17:13]  *** Contents of shared directory: ***
[2025-11-27 21:17:13] total 1324452
[2025-11-27 21:17:13] -rw-r--r--. 2 boincer umatlas 412849791 Nov 26 15:01 ATLAS.root_0
[2025-11-27 21:17:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:01 start_atlas.sh
[2025-11-27 21:17:13] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 15:01 input.tar.gz
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas 927305107 Nov 27 21:13 HITS.pool.root.1
[2025-11-27 21:17:13] -rw-------. 1 boincer umatlas  15462400 Nov 27 21:17 result.tar.gz
21:17:14 (884674): run_atlas exited; CPU time 281926.088779
21:17:14 (884674): called boinc_finish(0)

</stderr_txt>
]]>

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