Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:25:37 (765186): wrapper (7.7.26015): starting
19:25:37 (765186): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 19:25:37] Arguments: --nthreads 3
[2025-11-26 19:25:37] Threads: 3
[2025-11-26 19:25:37] Checking for CVMFS
[2025-11-26 19:25:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:25:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:25:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:25:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:25:38] 2.9.2.0 368311 97 59716 153331 3 88 35736575 36864000 0 130560 0 1189443 99.999 4108 10093 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 19:25:38] CVMFS is ok
[2025-11-26 19:25:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:25:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:25:38] Further information can be found at the LHC@home message board.
[2025-11-26 19:25:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:25:38] Checking for apptainer binary...
[2025-11-26 19:25:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:25:38] Running /usr/bin/apptainer --version
[2025-11-26 19:25:38] apptainer version 1.4.1-1.1
[2025-11-26 19:25:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:25:38] thA335
[2025-11-26 19:25:38] apptainer works
[2025-11-26 19:25:38] Set ATHENA_PROC_NUMBER=3
[2025-11-26 19:25:38] Set ATHENA_CORE_NUMBER=3
[2025-11-26 19:25:38] Starting ATLAS job with PandaID=6897863621
[2025-11-26 19:25:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:29:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:29:54] 2025-11-26 18:28:57,510 | INFO     | 
[2025-11-26 19:29:54] 2025-11-26 18:28:57,511 | INFO     | architecture information:
[2025-11-26 19:29:54] 2025-11-26 18:28:57,511 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:29:54] 2025-11-26 18:28:57,521 | INFO     | cat /etc/os-release:
[2025-11-26 19:29:54] NAME="CentOS Linux"
[2025-11-26 19:29:54] VERSION="7 (Core)"
[2025-11-26 19:29:54] ID="centos"
[2025-11-26 19:29:54] ID_LIKE="rhel fedora"
[2025-11-26 19:29:54] VERSION_ID="7"
[2025-11-26 19:29:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:29:54] ANSI_COLOR="0;31"
[2025-11-26 19:29:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:29:54] HOME_URL="https://www.centos.org/"
[2025-11-26 19:29:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:29:54] 
[2025-11-26 19:29:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:29:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:29:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:29:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:29:54] 
[2025-11-26 19:29:54] 2025-11-26 18:28:57,521 | INFO     | ***************************************
[2025-11-26 19:29:54] 2025-11-26 18:28:58,025 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 19:29:54] 2025-11-26 18:28:58,038 | INFO     | sufficient remaining disk space (825869991936 B)
[2025-11-26 19:29:54] 2025-11-26 18:28:58,038 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:29:54] 2025-11-26 18:28:58,038 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:29:54] 2025-11-26 18:28:58,039 | INFO     | update_server=False
[2025-11-26 19:29:54] 2025-11-26 18:28:58,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:29:54] 2025-11-26 18:28:58,039 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:29:54] 2025-11-26 18:28:58,039 | INFO     | aborting loop
[2025-11-26 19:29:54] 2025-11-26 18:28:58,039 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:29:54] 2025-11-26 18:28:58,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:29:54] 2025-11-26 18:28:59,045 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:28:59,045 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:28:59,046 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:28:59,127 | INFO     | all data control threads have been joined
[2025-11-26 19:29:54] 2025-11-26 18:28:59,271 | INFO     | all job control threads have been joined
[2025-11-26 19:29:54] 2025-11-26 18:28:59,339 | INFO     | all payload control threads have been joined
[2025-11-26 19:29:54] 2025-11-26 18:28:59,653 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:28:59,666 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:28:59,721 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,133 | INFO     | [data] control thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,200 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,205 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,276 | INFO     | [job] control thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,314 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,328 | INFO     | [job] validate thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,345 | INFO     | [payload] control thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,406 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:00,458 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:01,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:29:54] 2025-11-26 18:29:05,041 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:29:54] 2025-11-26 18:29:28,979 | INFO     | PID=768917 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 19:29:54] 2025-11-26 18:29:28,980 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:29:54] 2025-11-26 18:29:28,980 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:29:54] 2025-11-26 18:29:28,980 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:29:54] 2025-11-26 18:29:48,091 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:29:54] 2025-11-26 18:29:48,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408921077568)>', '<ExcThread(monitor, started 140408436807424)>']
[2025-11-26 19:29:54] 2025-11-26 18:29:49,087 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:29:54] 2025-11-26 18:29:49,087 | INFO     | [monitor] control thread has ended
[2025-11-26 19:29:54] 2025-11-26 18:29:53,898 | INFO     | all workflow threads have been joined
[2025-11-26 19:29:54] 2025-11-26 18:29:53,899 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:29:54] 2025-11-26 18:29:53,899 | INFO     | traces error code: 0
[2025-11-26 19:29:54] 2025-11-26 18:29:53,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:29:54] 2025-11-26 18:29:53,946 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:29:54] 2025-11-26 18:29:53,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:29:54] 2025-11-26 18:29:53,952 [wrapper] pilotpid: 768917
[2025-11-26 19:29:54] 2025-11-26 18:29:53,955 [wrapper] Pilot exit status: 0
[2025-11-26 19:29:54] 2025-11-26 18:29:53,962 [wrapper] pandaids: 6897863621
[2025-11-26 19:29:54] 2025-11-26 18:29:53,981 [wrapper] cleanup supervisor_pilot  768923 768918
[2025-11-26 19:29:54] 2025-11-26 18:29:53,984 [wrapper] Test setup, not cleaning
[2025-11-26 19:29:54] 2025-11-26 18:29:53,987 [wrapper] apfmon messages muted
[2025-11-26 19:29:54] 2025-11-26 18:29:53,989 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:29:54] 2025-11-26 18:29:53,992 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:29:54]  *** Error codes and diagnostics ***
[2025-11-26 19:29:54]     "exeErrorCode": 65,
[2025-11-26 19:29:54]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 19:29:54]     "pilotErrorCode": 1305,
[2025-11-26 19:29:54]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 19:29:54]  *** Listing of results directory ***
[2025-11-26 19:29:54] total 402512
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-26 19:29:54] -rwx------ 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc       100 Nov 26 19:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:29:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 19:25 run_atlas
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc       105 Nov 26 19:25 job.xml
[2025-11-26 19:29:54] -rw-r--r-- 2 boinc boinc 407979321 Nov 26 19:25 EVNT.47483658._002327.pool.root.1
[2025-11-26 19:29:54] -rw-r--r-- 2 boinc boinc    590103 Nov 26 19:25 input.tar.gz
[2025-11-26 19:29:54] -rw-r--r-- 2 boinc boinc     15847 Nov 26 19:25 start_atlas.sh
[2025-11-26 19:29:54] drwxrwx--x 2 boinc boinc      4096 Nov 26 19:25 shared
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc         0 Nov 26 19:25 boinc_setup_complete
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc      6196 Nov 26 19:25 init_data.xml
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc         0 Nov 26 19:25 boinc_lockfile
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc      2786 Nov 26 19:25 pandaJob.out
[2025-11-26 19:29:54] -rw------- 1 boinc boinc    991522 Nov 26 19:25 agis_schedconf.cvmfs.json
[2025-11-26 19:29:54] -rw------- 1 boinc boinc   1516240 Nov 26 19:25 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:29:54] drwx------ 5 boinc boinc      4096 Nov 26 19:25 pilot3
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc       523 Nov 26 19:26 boinc_task_state.xml
[2025-11-26 19:29:54] -rw------- 1 boinc boinc       980 Nov 26 19:26 memory_monitor_summary.json
[2025-11-26 19:29:54] -rw------- 1 boinc boinc     55795 Nov 26 19:26 log.47556161._003100.job.log.tgz.1
[2025-11-26 19:29:54] -rw------- 1 boinc boinc        95 Nov 26 19:28 pilot_heartbeat.json
[2025-11-26 19:29:54] -rw------- 1 boinc boinc      8385 Nov 26 19:28 heartbeat.json
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc      8192 Nov 26 19:29 boinc_mmap_file
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc        23 Nov 26 19:29 wrapper_checkpoint.txt
[2025-11-26 19:29:54] -rw------- 1 boinc boinc      4751 Nov 26 19:29 pilotlog.txt
[2025-11-26 19:29:54] -rw------- 1 boinc boinc     91554 Nov 26 19:29 log.47556161._003100.job.log.1
[2025-11-26 19:29:54] -rw------- 1 boinc boinc       186 Nov 26 19:29 output.list
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc       620 Nov 26 19:29 runtime_log
[2025-11-26 19:29:54] -rw------- 1 boinc boinc    163840 Nov 26 19:29 result.tar.gz
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc      8744 Nov 26 19:29 runtime_log.err
[2025-11-26 19:29:54] -rw------- 1 boinc boinc       649 Nov 26 19:29 brfNDmXbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvcMKDmGY0cxn.diag
[2025-11-26 19:29:54] -rw-r--r-- 1 boinc boinc      9398 Nov 26 19:29 stderr.txt
[2025-11-26 19:29:54] No HITS result produced
[2025-11-26 19:29:54]  *** Contents of shared directory: ***
[2025-11-26 19:29:54] total 399180
[2025-11-26 19:29:54] -rw-r--r-- 2 boinc boinc 407979321 Nov 26 19:25 ATLAS.root_0
[2025-11-26 19:29:54] -rw-r--r-- 2 boinc boinc    590103 Nov 26 19:25 input.tar.gz
[2025-11-26 19:29:54] -rw-r--r-- 2 boinc boinc     15847 Nov 26 19:25 start_atlas.sh
[2025-11-26 19:29:54] -rw------- 1 boinc boinc    163840 Nov 26 19:29 result.tar.gz
19:29:55 (765186): run_atlas exited; CPU time 30.187658
19:29:55 (765186): called boinc_finish(0)

</stderr_txt>
]]>

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