Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:26:59 (3445723): wrapper (7.7.26015): starting
10:26:59 (3445723): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 10:26:59] Arguments: --nthreads 12
[2025-11-26 10:26:59] Threads: 12
[2025-11-26 10:26:59] Checking for CVMFS
[2025-11-26 10:27:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:27:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:27:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:27:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:27:02] 2.11.5.0 2718463 28450 207936 153331 2 271 34784726 45568001 25740 130560 0 182982165 99.785 123044150 19973 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 10:27:02] CVMFS is ok
[2025-11-26 10:27:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:27:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:27:02] Further information can be found at the LHC@home message board.
[2025-11-26 10:27:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:27:02] Checking for apptainer binary...
[2025-11-26 10:27:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:27:02] Running /usr/bin/apptainer --version
[2025-11-26 10:27:03] apptainer version 1.4.1-1.el9
[2025-11-26 10:27:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:27:03] wns0043.triumf.lcg
[2025-11-26 10:27:03] apptainer works
[2025-11-26 10:27:03] Set ATHENA_PROC_NUMBER=12
[2025-11-26 10:27:03] Set ATHENA_CORE_NUMBER=12
[2025-11-26 10:27:04] Starting ATLAS job with PandaID=6898178773
[2025-11-26 10:27:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:36:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:36:13] 2025-11-26 18:35:36,333 | WARNING  | wrong length of table data, x=[1764181779.0, 1764181840.0, 1764181901.0, 1764181962.0], y=[1698.0, 270075.0, 613329.0, 479021.0] (must be same and length>=4)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | could have reported an average CPU frequency of 1387 MHz (4 samples)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | ..............................
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . Timing measurements:
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . get job = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . initial setup = 4 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . payload setup = 30 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . stage-in = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . payload execution = 248 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . stage-out = 2 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . log creation = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | ..............................
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178773/pilotlog.txt
[2025-11-26 10:36:13] 2025-11-26 18:35:36,362 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 10:36:13] - Log from pilotlog.txt -
[2025-11-26 10:36:13] 2025-11-26 18:35:36,327 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898178773/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,331 | INFO     | extracted standard info from prmon json
[2025-11-26 10:36:13] 2025-11-26 18:35:36,331 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:36:13] 2025-11-26 18:35:36,331 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:36:13] 2025-11-26 18:35:36,332 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 10:36:13] 2025-11-26 18:35:36,332 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 10:36:13] 2025-11-26 18:35:36,333 | WARNING  | wrong length of table data, x=[1764181779.0, 1764181840.0, 1764181901.0, 1764181962.0], y=[1698.0, 270075.0, 613329.0, 479021.0] (must be same and length>=4)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | could have reported an average CPU frequency of 1387 MHz (4 samples)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | ..............................
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . Timing measurements:
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . get job = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . initial setup = 4 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . payload setup = 30 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . stage-in = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . payload execution = 248 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . stage-out = 2 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . log creation = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | ..............................
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178773/pilotlog.txt
[2025-11-26 10:36:13] 2025-11-26 18:35:36,363 | WARNING  | 
[2025-11-26 10:36:13] [begin log extracts]
[2025-11-26 10:36:13] - Log from pilotlog.txt -
[2025-11-26 10:36:13] 2025-11-26 18:35:36,327 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898178773/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,331 | INFO     | extracted standard info from prmon json
[2025-11-26 10:36:13] 2025-11-26 18:35:36,331 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:36:13] 2025-11-26 18:35:36,331 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:36:13] 2025-11-26 18:35:36,332 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 10:36:13] 2025-11-26 18:35:36,332 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 10:36:13] 2025-11-26 18:35:36,333 | WARNING  | wrong length of table data, x=[1764181779.0, 1764181840.0, 1764181901.0, 1764181962.0], y=[1698.0, 270075.0, 613329.0, 479021.0] (must be same and length>=4)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | could have reported an average CPU frequency of 1387 MHz (4 samples)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | ..............................
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . Timing measurements:
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . get job = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,334 | INFO     | . initial setup = 4 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . payload setup = 30 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . stage-in = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . payload execution = 248 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . stage-out = 2 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | . log creation = 0 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | ..............................
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:36:13] 2025-11-26 18:35:36,335 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178773/pilotlog.txt
[2025-11-26 10:36:13] [end log extracts]
[2025-11-26 10:36:13] 2025-11-26 18:35:36,364 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 10:36:13] 2025-11-26 18:35:36,365 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 10:36:13] 2025-11-26 18:35:36,937 | INFO     | 
[2025-11-26 10:36:13] 2025-11-26 18:35:36,937 | INFO     | job summary report
[2025-11-26 10:36:13] 2025-11-26 18:35:36,937 | INFO     | --------------------------------------------------
[2025-11-26 10:36:13] 2025-11-26 18:35:36,937 | INFO     | PanDA job id: 6898178773
[2025-11-26 10:36:13] 2025-11-26 18:35:36,937 | INFO     | task id: 47556161
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 10:33:05,059 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | pilot state: failed 
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | transexitcode: 65
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | exeerrorcode: 65
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | exitcode: 65
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | cpuconsumptiontime: 79 s
[2025-11-26 10:36:13] 2025-11-26 18:35:36,938 | INFO     | nevents: 0
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | neventsw: 0
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | pid: 3470906
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | pgrp: 3470906
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | corecount: 12
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | event service: False
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | sizes: {0: 2284090, 1: 2284289, 12: 2284289, 22: 2284579, 23: 2284607, 281: 2310112, 282: 2310244, 284: 2314590, 285: 2314646, 427: 2314840}
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | --------------------------------------------------
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | 
[2025-11-26 10:36:13] 2025-11-26 18:35:36,939 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 10:36:13] 2025-11-26 18:35:37,031 | INFO     | time since job start (472s) is within the limit (172800.0s)
[2025-11-26 10:36:13] 2025-11-26 18:35:37,057 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,057 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,059 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,059 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:36:13] 2025-11-26 18:35:37,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:36:13] 2025-11-26 18:35:37,064 | INFO     | job 6898178773 has completed (purged errors)
[2025-11-26 10:36:13] 2025-11-26 18:35:37,064 | INFO     | overall cleanup function is called
[2025-11-26 10:36:13] 2025-11-26 18:35:38,073 | INFO     | --- collectZombieJob: --- 10, [3470906]
[2025-11-26 10:36:13] 2025-11-26 18:35:38,073 | INFO     | zombie collector waiting for pid 3470906
[2025-11-26 10:36:13] 2025-11-26 18:35:38,073 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:36:13] 2025-11-26 18:35:38,073 | INFO     | collected zombie processes
[2025-11-26 10:36:13] 2025-11-26 18:35:38,073 | INFO     | will attempt to kill all subprocesses of pid=3470906
[2025-11-26 10:36:13] 2025-11-26 18:35:39,548 | INFO     | process IDs to be killed: [3470906] (in reverse order)
[2025-11-26 10:36:13] 2025-11-26 18:35:40,189 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:36:13] 2025-11-26 18:35:40,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:36:13] 2025-11-26 18:35:40,244 | INFO     | did not find any defunct processes belonging to 3470906
[2025-11-26 10:36:13] 2025-11-26 18:35:40,292 | INFO     | did not find any defunct processes belonging to 3470906
[2025-11-26 10:36:13] 2025-11-26 18:35:40,293 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:36:13] 2025-11-26 18:35:40,293 | INFO     | ready for new job
[2025-11-26 10:36:13] 2025-11-26 18:35:40,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:36:13] 2025-11-26 18:35:40,301 | INFO     | ***************************************
[2025-11-26 10:36:13] 2025-11-26 18:35:40,301 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:36:13] 2025-11-26 18:35:40,301 | INFO     | ***************************************
[2025-11-26 10:36:13] 2025-11-26 18:35:40,302 | INFO     | 
[2025-11-26 10:36:13] 2025-11-26 18:35:40,315 | INFO     | architecture information:
[2025-11-26 10:36:13] 2025-11-26 18:35:40,325 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:36:13] 2025-11-26 18:35:40,399 | INFO     | cat /etc/os-release:
[2025-11-26 10:36:13] NAME="CentOS Linux"
[2025-11-26 10:36:13] VERSION="7 (Core)"
[2025-11-26 10:36:13] ID="centos"
[2025-11-26 10:36:13] ID_LIKE="rhel fedora"
[2025-11-26 10:36:13] VERSION_ID="7"
[2025-11-26 10:36:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:36:13] ANSI_COLOR="0;31"
[2025-11-26 10:36:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:36:13] HOME_URL="https://www.centos.org/"
[2025-11-26 10:36:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:36:13] 
[2025-11-26 10:36:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:36:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:36:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:36:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:36:13] 
[2025-11-26 10:36:13] 2025-11-26 18:35:40,400 | INFO     | ***************************************
[2025-11-26 10:36:13] 2025-11-26 18:35:40,903 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 10:36:13] 2025-11-26 18:35:40,960 | INFO     | sufficient remaining disk space (1824532725760 B)
[2025-11-26 10:36:13] 2025-11-26 18:35:40,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:36:13] 2025-11-26 18:35:40,961 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:36:13] 2025-11-26 18:35:40,961 | INFO     | update_server=False
[2025-11-26 10:36:13] 2025-11-26 18:35:40,961 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:36:13] 2025-11-26 18:35:40,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:36:13] 2025-11-26 18:35:40,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:36:13] 2025-11-26 18:35:40,962 | INFO     | aborting loop
[2025-11-26 10:36:13] 2025-11-26 18:35:41,084 | INFO     | all payload control threads have been joined
[2025-11-26 10:36:13] 2025-11-26 18:35:41,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:36:13] 2025-11-26 18:35:41,759 | INFO     | all job control threads have been joined
[2025-11-26 10:36:13] 2025-11-26 18:35:41,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:36:13] 2025-11-26 18:35:41,967 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:41,974 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:41,989 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:41,993 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,029 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,051 | INFO     | all data control threads have been joined
[2025-11-26 10:36:13] 2025-11-26 18:35:42,090 | INFO     | [payload] control thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,158 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,529 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,535 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,612 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,627 | INFO     | [job] validate thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,765 | INFO     | [job] control thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:42,974 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:43,058 | INFO     | [data] control thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:43,853 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:44,971 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:36:13] 2025-11-26 18:35:45,652 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:36:13] 2025-11-26 18:35:47,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021835650880)>', '<ExcThread(monitor, started 140021117982464)>']
[2025-11-26 10:36:13] 2025-11-26 18:35:52,676 | INFO     | all workflow threads have been joined
[2025-11-26 10:36:13] 2025-11-26 18:35:52,676 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:36:13] 2025-11-26 18:35:52,677 | INFO     | traces error code: 0
[2025-11-26 10:36:13] 2025-11-26 18:35:52,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:36:13] 2025-11-26 18:36:11,270 | INFO     | PID=3456471 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:36:13] 2025-11-26 18:36:11,270 | INFO     | .. there are 28 such processes running
[2025-11-26 10:36:13] 2025-11-26 18:36:11,271 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:36:13] 2025-11-26 18:36:11,271 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:36:13] 2025-11-26 18:36:11,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:36:13] 2025-11-26 18:36:11,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:36:13] 2025-11-26 18:36:11,272 | INFO     | [monitor] control thread has ended
[2025-11-26 10:36:13] 2025-11-26 18:36:12,077 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:36:13] 2025-11-26 18:36:12,104 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:36:13] 2025-11-26 18:36:12,139 [wrapper] pilotpid: 3456471
[2025-11-26 10:36:13] 2025-11-26 18:36:12,150 [wrapper] Pilot exit status: 0
[2025-11-26 10:36:13] 2025-11-26 18:36:12,255 [wrapper] pandaids: 6898178773
[2025-11-26 10:36:13] 2025-11-26 18:36:12,672 [wrapper] cleanup supervisor_pilot 3456480 3456472
[2025-11-26 10:36:13] 2025-11-26 18:36:12,683 [wrapper] Test setup, not cleaning
[2025-11-26 10:36:13] 2025-11-26 18:36:12,701 [wrapper] apfmon messages muted
[2025-11-26 10:36:13] 2025-11-26 18:36:12,713 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:36:13] 2025-11-26 18:36:12,726 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:36:13]  *** Error codes and diagnostics ***
[2025-11-26 10:36:13]     "exeErrorCode": 65,
[2025-11-26 10:36:13]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 10:36:13]     "pilotErrorCode": 1305,
[2025-11-26 10:36:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 10:36:13]  *** Listing of results directory ***
[2025-11-26 10:36:13] total 402884
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc    576529 Nov 25 19:33 pilot3.tar.gz
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc      5112 Nov 25 20:15 queuedata.json
[2025-11-26 10:36:13] -rwx------. 1 boinc boinc     36292 Nov 25 20:19 runpilot2-wrapper.sh
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc       100 Nov 26 10:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:36:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 10:26 run_atlas
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc       105 Nov 26 10:26 job.xml
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc      6595 Nov 26 10:26 init_data.xml
[2025-11-26 10:36:13] -rw-r--r--. 2 boinc boinc 408293916 Nov 26 10:26 EVNT.47483658._002480.pool.root.1
[2025-11-26 10:36:13] -rw-r--r--. 2 boinc boinc     15847 Nov 26 10:26 start_atlas.sh
[2025-11-26 10:36:13] drwxrwx--x. 2 boinc boinc      4096 Nov 26 10:26 shared
[2025-11-26 10:36:13] -rw-r--r--. 2 boinc boinc    590105 Nov 26 10:26 input.tar.gz
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc         0 Nov 26 10:26 boinc_lockfile
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc      2785 Nov 26 10:27 pandaJob.out
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc    991522 Nov 26 10:27 agis_schedconf.cvmfs.json
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc   1516240 Nov 26 10:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:36:13] drwx------. 5 boinc boinc      4096 Nov 26 10:27 pilot3
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc       525 Nov 26 10:32 boinc_task_state.xml
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc      1008 Nov 26 10:33 memory_monitor_summary.json
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc     50519 Nov 26 10:33 log.47556161._004625.job.log.tgz.1
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc     10342 Nov 26 10:35 heartbeat.json
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc      8192 Nov 26 10:36 boinc_mmap_file
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc        23 Nov 26 10:36 wrapper_checkpoint.txt
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc        95 Nov 26 10:36 pilot_heartbeat.json
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc       823 Nov 26 10:36 pilotlog.txt
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc    121220 Nov 26 10:36 log.47556161._004625.job.log.1
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc       186 Nov 26 10:36 output.list
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc       620 Nov 26 10:36 runtime_log
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc    194560 Nov 26 10:36 result.tar.gz
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc      8636 Nov 26 10:36 runtime_log.err
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc       646 Nov 26 10:36 peENDmwAMi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsuJKDmZDqmPm.diag
[2025-11-26 10:36:13] -rw-r--r--. 1 boinc boinc     22677 Nov 26 10:36 stderr.txt
[2025-11-26 10:36:13] No HITS result produced
[2025-11-26 10:36:13]  *** Contents of shared directory: ***
[2025-11-26 10:36:13] total 399520
[2025-11-26 10:36:13] -rw-r--r--. 2 boinc boinc 408293916 Nov 26 10:26 ATLAS.root_0
[2025-11-26 10:36:13] -rw-r--r--. 2 boinc boinc     15847 Nov 26 10:26 start_atlas.sh
[2025-11-26 10:36:13] -rw-r--r--. 2 boinc boinc    590105 Nov 26 10:26 input.tar.gz
[2025-11-26 10:36:13] -rw-------. 1 boinc boinc    194560 Nov 26 10:36 result.tar.gz
10:36:14 (3445723): run_atlas exited; CPU time 84.341064
10:36:14 (3445723): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN