Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:34:22 (806809): wrapper (7.7.26015): starting
19:34:22 (806809): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 19:34:22] Arguments: --nthreads 3
[2025-11-26 19:34:22] Threads: 3
[2025-11-26 19:34:22] Checking for CVMFS
[2025-11-26 19:34:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:34:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:34:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:34:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:34:22] 2.9.2.0 368311 105 60408 153331 2 88 35737009 36864000 0 130560 0 1314628 99.999 4109 9973 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 19:34:22] CVMFS is ok
[2025-11-26 19:34:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:34:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:34:22] Further information can be found at the LHC@home message board.
[2025-11-26 19:34:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:34:22] Checking for apptainer binary...
[2025-11-26 19:34:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:34:22] Running /usr/bin/apptainer --version
[2025-11-26 19:34:22] apptainer version 1.4.1-1.1
[2025-11-26 19:34:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:34:22] thA335
[2025-11-26 19:34:22] apptainer works
[2025-11-26 19:34:22] Set ATHENA_PROC_NUMBER=3
[2025-11-26 19:34:22] Set ATHENA_CORE_NUMBER=3
[2025-11-26 19:34:22] Starting ATLAS job with PandaID=6897509462
[2025-11-26 19:34:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:38:40]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:38:40] 2025-11-26 18:37:52,856 | INFO     | update_server=False
[2025-11-26 19:38:40] 2025-11-26 18:37:52,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:38:40] 2025-11-26 18:37:52,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:38:40] 2025-11-26 18:37:52,857 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:38:40] 2025-11-26 18:37:52,857 | INFO     | aborting loop
[2025-11-26 19:38:40] 2025-11-26 18:37:53,517 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:38:40] 2025-11-26 18:37:53,673 | INFO     | all job control threads have been joined
[2025-11-26 19:38:40] 2025-11-26 18:37:53,740 | INFO     | all data control threads have been joined
[2025-11-26 19:38:40] 2025-11-26 18:37:53,862 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:53,863 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:53,864 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:54,027 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:54,149 | INFO     | all payload control threads have been joined
[2025-11-26 19:38:40] 2025-11-26 18:37:54,462 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:54,679 | INFO     | [job] control thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:54,701 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:54,746 | INFO     | [data] control thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:55,015 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:55,067 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:55,140 | INFO     | [job] validate thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:55,155 | INFO     | [payload] control thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:55,228 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:55,292 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:55,523 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:37:55,820 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:38:40] 2025-11-26 18:37:59,828 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:38:40] 2025-11-26 18:38:22,891 | INFO     | PID=810542 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 19:38:40] 2025-11-26 18:38:22,891 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:38:40] 2025-11-26 18:38:22,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:38:40] 2025-11-26 18:38:22,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:38:40] 2025-11-26 18:38:33,950 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:38:40] 2025-11-26 18:38:35,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339400808256)>', '<ExcThread(monitor, started 140338777806592)>']
[2025-11-26 19:38:40] 2025-11-26 18:38:35,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:38:40] 2025-11-26 18:38:35,961 | INFO     | [monitor] control thread has ended
[2025-11-26 19:38:40] 2025-11-26 18:38:40,719 | INFO     | all workflow threads have been joined
[2025-11-26 19:38:40] 2025-11-26 18:38:40,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:38:40] 2025-11-26 18:38:40,720 | INFO     | traces error code: 0
[2025-11-26 19:38:40] 2025-11-26 18:38:40,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:38:40] 2025-11-26 18:38:40,799 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:38:40] 2025-11-26 18:38:40,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:38:40] 2025-11-26 18:38:40,805 [wrapper] pilotpid: 810542
[2025-11-26 19:38:40] 2025-11-26 18:38:40,808 [wrapper] Pilot exit status: 0
[2025-11-26 19:38:40] 2025-11-26 18:38:40,816 [wrapper] pandaids: 6897509462
[2025-11-26 19:38:40] 2025-11-26 18:38:40,833 [wrapper] cleanup supervisor_pilot  810548 810543
[2025-11-26 19:38:40] 2025-11-26 18:38:40,835 [wrapper] Test setup, not cleaning
[2025-11-26 19:38:40] 2025-11-26 18:38:40,838 [wrapper] apfmon messages muted
[2025-11-26 19:38:40] 2025-11-26 18:38:40,840 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:38:40] 2025-11-26 18:38:40,843 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:38:40]  *** Error codes and diagnostics ***
[2025-11-26 19:38:40]     "exeErrorCode": 65,
[2025-11-26 19:38:40]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 19:38:40]     "pilotErrorCode": 1305,
[2025-11-26 19:38:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 19:38:40]  *** Listing of results directory ***
[2025-11-26 19:38:40] total 405184
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-26 19:38:40] -rwx------ 1 boinc boinc     36292 Nov 25 18:01 runpilot2-wrapper.sh
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc      5112 Nov 25 18:02 queuedata.json
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc       100 Nov 26 19:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:38:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 19:34 run_atlas
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc       105 Nov 26 19:34 job.xml
[2025-11-26 19:38:40] -rw-r--r-- 2 boinc boinc 410706910 Nov 26 19:34 EVNT.47483658._002289.pool.root.1
[2025-11-26 19:38:40] drwxrwx--x 2 boinc boinc      4096 Nov 26 19:34 shared
[2025-11-26 19:38:40] -rw-r--r-- 2 boinc boinc    590106 Nov 26 19:34 input.tar.gz
[2025-11-26 19:38:40] -rw-r--r-- 2 boinc boinc     15847 Nov 26 19:34 start_atlas.sh
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc         0 Nov 26 19:34 boinc_setup_complete
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc      6196 Nov 26 19:34 init_data.xml
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc         0 Nov 26 19:34 boinc_lockfile
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc      2786 Nov 26 19:34 pandaJob.out
[2025-11-26 19:38:40] -rw------- 1 boinc boinc    991522 Nov 26 19:34 agis_schedconf.cvmfs.json
[2025-11-26 19:38:40] -rw------- 1 boinc boinc   1516240 Nov 26 19:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:38:40] drwx------ 5 boinc boinc      4096 Nov 26 19:34 pilot3
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc       522 Nov 26 19:35 boinc_task_state.xml
[2025-11-26 19:38:40] -rw------- 1 boinc boinc       952 Nov 26 19:35 memory_monitor_summary.json
[2025-11-26 19:38:40] -rw------- 1 boinc boinc     55969 Nov 26 19:35 log.47556161._002722.job.log.tgz.1
[2025-11-26 19:38:40] -rw------- 1 boinc boinc        95 Nov 26 19:37 pilot_heartbeat.json
[2025-11-26 19:38:40] -rw------- 1 boinc boinc      8404 Nov 26 19:37 heartbeat.json
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc      8192 Nov 26 19:38 boinc_mmap_file
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc        22 Nov 26 19:38 wrapper_checkpoint.txt
[2025-11-26 19:38:40] -rw------- 1 boinc boinc      4751 Nov 26 19:38 pilotlog.txt
[2025-11-26 19:38:40] -rw------- 1 boinc boinc     93850 Nov 26 19:38 log.47556161._002722.job.log.1
[2025-11-26 19:38:40] -rw------- 1 boinc boinc       186 Nov 26 19:38 output.list
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc       620 Nov 26 19:38 runtime_log
[2025-11-26 19:38:40] -rw------- 1 boinc boinc    174080 Nov 26 19:38 result.tar.gz
[2025-11-26 19:38:40] -rw------- 1 boinc boinc       648 Nov 26 19:38 vJBMDm6aBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmraMKDmORXxem.diag
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc      8744 Nov 26 19:38 runtime_log.err
[2025-11-26 19:38:40] -rw-r--r-- 1 boinc boinc      7783 Nov 26 19:38 stderr.txt
[2025-11-26 19:38:40] No HITS result produced
[2025-11-26 19:38:40]  *** Contents of shared directory: ***
[2025-11-26 19:38:40] total 401856
[2025-11-26 19:38:40] -rw-r--r-- 2 boinc boinc 410706910 Nov 26 19:34 ATLAS.root_0
[2025-11-26 19:38:40] -rw-r--r-- 2 boinc boinc    590106 Nov 26 19:34 input.tar.gz
[2025-11-26 19:38:40] -rw-r--r-- 2 boinc boinc     15847 Nov 26 19:34 start_atlas.sh
[2025-11-26 19:38:40] -rw------- 1 boinc boinc    174080 Nov 26 19:38 result.tar.gz
19:38:42 (806809): run_atlas exited; CPU time 31.860290
19:38:42 (806809): called boinc_finish(0)

</stderr_txt>
]]>

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