Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:20:09 (1756): wrapper (7.7.26015): starting
13:20:09 (1756): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:20:09] Arguments: --nthreads 8
[2025-11-26 13:20:09] Threads: 8
[2025-11-26 13:20:09] Checking for CVMFS
[2025-11-26 13:20:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:20:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:20:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:20:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:20:10] 2.11.2.0 3838 142816 136860 153331 0 49 13313010 18432001 1885 130560 0 117752952 99.988 5079236 27192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 13:20:10] CVMFS is ok
[2025-11-26 13:20:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:20:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:20:10] Further information can be found at the LHC@home message board.
[2025-11-26 13:20:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:20:10] Checking for apptainer binary...
[2025-11-26 13:20:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:20:10] Running /usr/bin/apptainer --version
[2025-11-26 13:20:10] apptainer version 1.3.2-1.el7
[2025-11-26 13:20:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:20:10] c-206-4.aglt2.org
[2025-11-26 13:20:10] apptainer works
[2025-11-26 13:20:10] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:20:10] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:20:10] Starting ATLAS job with PandaID=6897531727
[2025-11-26 13:20:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:54:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:54:38] 2025-11-27 13:54:04,576 | INFO     | monitor loop #5037: job 0:6897531727 is in state 'finished'
[2025-11-27 08:54:38] 2025-11-27 13:54:04,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,143 | INFO     | time since job start (70422s) is within the limit (172800.0s)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,811 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 08:54:38] 2025-11-27 13:54:05,814 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2095.1666666666665
[2025-11-27 08:54:38] 2025-11-27 13:54:05,817 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897531727/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,817 | INFO     | extracted standard info from prmon json
[2025-11-27 08:54:38] 2025-11-27 13:54:05,817 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:54:38] 2025-11-27 13:54:05,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:54:38] 2025-11-27 13:54:05,833 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:54:38] 2025-11-27 13:54:05,834 | INFO     | sum of square deviations: 476536634360.4371
[2025-11-27 08:54:38] 2025-11-27 13:54:05,857 | INFO     | sum of deviations: 2173853031869.5635
[2025-11-27 08:54:38] 2025-11-27 13:54:05,857 | INFO     | mean x: 1764216415.0753899
[2025-11-27 08:54:38] 2025-11-27 13:54:05,857 | INFO     | mean y: 3025615.142980936
[2025-11-27 08:54:38] 2025-11-27 13:54:05,857 | INFO     | intersect: -8044933190.6534815
[2025-11-27 08:54:38] 2025-11-27 13:54:05,858 | INFO     | chi2: 4.7871808602151065
[2025-11-27 08:54:38] 2025-11-27 13:54:05,859 | INFO     | sum of square deviations: 470369493336.27814
[2025-11-27 08:54:38] 2025-11-27 13:54:05,882 | INFO     | sum of deviations: 2499718536693.434
[2025-11-27 08:54:38] 2025-11-27 13:54:05,882 | INFO     | mean x: 1764216262.5778937
[2025-11-27 08:54:38] 2025-11-27 13:54:05,883 | INFO     | mean y: 3033668.9225413403
[2025-11-27 08:54:38] 2025-11-27 13:54:05,883 | INFO     | intersect: -9372668107.614927
[2025-11-27 08:54:38] 2025-11-27 13:54:05,884 | INFO     | chi2: 2.6482240322970285
[2025-11-27 08:54:38] 2025-11-27 13:54:05,884 | INFO     | current chi2=2.6482240322970285 (change=44.68092788585319 %)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,885 | INFO     | sum of square deviations: 464255795174.6019
[2025-11-27 08:54:38] 2025-11-27 13:54:05,907 | INFO     | sum of deviations: 2595592762102.5693
[2025-11-27 08:54:38] 2025-11-27 13:54:05,908 | INFO     | mean x: 1764216110.0804195
[2025-11-27 08:54:38] 2025-11-27 13:54:05,908 | INFO     | mean y: 3036056.395979021
[2025-11-27 08:54:38] 2025-11-27 13:54:05,908 | INFO     | intersect: -9860462932.103024
[2025-11-27 08:54:38] 2025-11-27 13:54:05,909 | INFO     | chi2: 2.3224399353568965
[2025-11-27 08:54:38] 2025-11-27 13:54:05,909 | INFO     | current chi2=2.3224399353568965 (change=12.301984007657838 %)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,909 | INFO     | right removable region: 1143
[2025-11-27 08:54:38] 2025-11-27 13:54:05,910 | INFO     | sum of square deviations: 470369088296.2784
[2025-11-27 08:54:38] 2025-11-27 13:54:05,933 | INFO     | sum of deviations: 1855622536382.0327
[2025-11-27 08:54:38] 2025-11-27 13:54:05,934 | INFO     | mean x: 1764216567.5778937
[2025-11-27 08:54:38] 2025-11-27 13:54:05,934 | INFO     | mean y: 3033475.2454308094
[2025-11-27 08:54:38] 2025-11-27 13:54:05,934 | INFO     | intersect: -6956862706.950173
[2025-11-27 08:54:38] 2025-11-27 13:54:05,935 | INFO     | chi2: 2.7176080791846675
[2025-11-27 08:54:38] 2025-11-27 13:54:05,935 | INFO     | current chi2=2.7176080791846675 (change=43.23155613839593 %)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,936 | INFO     | sum of square deviations: 464255055183.7609
[2025-11-27 08:54:38] 2025-11-27 13:54:05,959 | INFO     | sum of deviations: 1772446563629.317
[2025-11-27 08:54:38] 2025-11-27 13:54:05,959 | INFO     | mean x: 1764216720.0795455
[2025-11-27 08:54:38] 2025-11-27 13:54:05,960 | INFO     | mean y: 3035549.611888112
[2025-11-27 08:54:38] 2025-11-27 13:54:05,960 | INFO     | intersect: -6732442778.706276
[2025-11-27 08:54:38] 2025-11-27 13:54:05,961 | INFO     | chi2: 2.653878349985032
[2025-11-27 08:54:38] 2025-11-27 13:54:05,961 | INFO     | current chi2=2.653878349985032 (change=2.345066961191689 %)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,961 | INFO     | left removable region: 20
[2025-11-27 08:54:38] 2025-11-27 13:54:05,962 | INFO     | sum of square deviations: 439155406588.45715
[2025-11-27 08:54:38] 2025-11-27 13:54:05,984 | INFO     | sum of deviations: 2080789226891.3577
[2025-11-27 08:54:38] 2025-11-27 13:54:05,984 | INFO     | mean x: 1764216689.5859306
[2025-11-27 08:54:38] 2025-11-27 13:54:05,984 | INFO     | mean y: 3048873.934105076
[2025-11-27 08:54:38] 2025-11-27 13:54:05,984 | INFO     | intersect: -8356094669.6007805
[2025-11-27 08:54:38] 2025-11-27 13:54:05,985 | INFO     | chi2: 0.1508750639914141
[2025-11-27 08:54:38] 2025-11-27 13:54:05,985 | INFO     | current memory leak: 4.74 B/s (using 1123 data points, chi2=0.15)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,986 | INFO     | could have reported an average CPU frequency of 2611 MHz (42 samples)
[2025-11-27 08:54:38] 2025-11-27 13:54:05,986 | INFO     | ..............................
[2025-11-27 08:54:38] 2025-11-27 13:54:05,986 | INFO     | . Timing measurements:
[2025-11-27 08:54:38] 2025-11-27 13:54:05,986 | INFO     | . get job = 0 s
[2025-11-27 08:54:38] 2025-11-27 13:54:05,986 | INFO     | . initial setup = 3 s
[2025-11-27 08:54:38] 2025-11-27 13:54:05,987 | INFO     | . payload setup = 5 s
[2025-11-27 08:54:38] 2025-11-27 13:54:05,987 | INFO     | . stage-in = 0 s
[2025-11-27 08:54:38] 2025-11-27 13:54:05,987 | INFO     | . payload execution = 70389 s
[2025-11-27 08:54:38] 2025-11-27 13:54:05,987 | INFO     | . stage-out = 3 s
[2025-11-27 08:54:38] 2025-11-27 13:54:05,987 | INFO     | . log creation = 0 s
[2025-11-27 08:54:38] 2025-11-27 13:54:05,987 | INFO     | ..............................
[2025-11-27 08:54:38] 2025-11-27 13:54:06,060 | INFO     | 
[2025-11-27 08:54:38] 2025-11-27 13:54:06,060 | INFO     | job summary report
[2025-11-27 08:54:38] 2025-11-27 13:54:06,060 | INFO     | --------------------------------------------------
[2025-11-27 08:54:38] 2025-11-27 13:54:06,060 | INFO     | PanDA job id: 6897531727
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | task id: 47556161
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | errors: (none)
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | pilot state: finished 
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | transexitcode: 0
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | exeerrorcode: 0
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | exeerrordiag: 
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | exitcode: 0
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | exitmsg: OK
[2025-11-27 08:54:38] 2025-11-27 13:54:06,061 | INFO     | cpuconsumptiontime: 541701 s
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | nevents: 1000
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | neventsw: 0
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | pid: 12289
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | pgrp: 12289
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | corecount: 8
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | event service: False
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | sizes: {0: 2284038, 1: 2284293, 4: 2284555, 12: 2284583, 70398: 2341296, 70403: 2350290, 70405: 2350474, 70408: 2350720}
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | --------------------------------------------------
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | 
[2025-11-27 08:54:38] 2025-11-27 13:54:06,062 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 08:54:38] 2025-11-27 13:54:06,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,079 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:54:38] 2025-11-27 13:54:06,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:54:38] 2025-11-27 13:54:06,080 | INFO     | job 6897531727 has completed (purged errors)
[2025-11-27 08:54:38] 2025-11-27 13:54:06,080 | INFO     | overall cleanup function is called
[2025-11-27 08:54:38] 2025-11-27 13:54:07,088 | INFO     | --- collectZombieJob: --- 10, [12289]
[2025-11-27 08:54:38] 2025-11-27 13:54:07,088 | INFO     | zombie collector waiting for pid 12289
[2025-11-27 08:54:38] 2025-11-27 13:54:07,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:54:38] 2025-11-27 13:54:07,088 | INFO     | collected zombie processes
[2025-11-27 08:54:38] 2025-11-27 13:54:07,089 | INFO     | will attempt to kill all subprocesses of pid=12289
[2025-11-27 08:54:38] 2025-11-27 13:54:07,227 | INFO     | process IDs to be killed: [12289] (in reverse order)
[2025-11-27 08:54:38] 2025-11-27 13:54:07,271 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:54:38] 2025-11-27 13:54:07,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:54:38] 2025-11-27 13:54:07,274 | INFO     | did not find any defunct processes belonging to 12289
[2025-11-27 08:54:38] 2025-11-27 13:54:07,276 | INFO     | did not find any defunct processes belonging to 12289
[2025-11-27 08:54:38] 2025-11-27 13:54:07,277 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:54:38] 2025-11-27 13:54:07,278 | INFO     | ready for new job
[2025-11-27 08:54:38] 2025-11-27 13:54:07,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:54:38] 2025-11-27 13:54:07,282 | INFO     | ***************************************
[2025-11-27 08:54:38] 2025-11-27 13:54:07,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:54:38] 2025-11-27 13:54:07,282 | INFO     | ***************************************
[2025-11-27 08:54:38] 2025-11-27 13:54:07,282 | INFO     | 
[2025-11-27 08:54:38] 2025-11-27 13:54:07,283 | INFO     | architecture information:
[2025-11-27 08:54:38] 2025-11-27 13:54:07,283 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:54:38] 2025-11-27 13:54:07,295 | INFO     | cat /etc/os-release:
[2025-11-27 08:54:38] NAME="CentOS Linux"
[2025-11-27 08:54:38] VERSION="7 (Core)"
[2025-11-27 08:54:38] ID="centos"
[2025-11-27 08:54:38] ID_LIKE="rhel fedora"
[2025-11-27 08:54:38] VERSION_ID="7"
[2025-11-27 08:54:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:54:38] ANSI_COLOR="0;31"
[2025-11-27 08:54:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:54:38] HOME_URL="https://www.centos.org/"
[2025-11-27 08:54:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:54:38] 
[2025-11-27 08:54:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:54:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:54:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:54:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:54:38] 
[2025-11-27 08:54:38] 2025-11-27 13:54:07,295 | INFO     | ***************************************
[2025-11-27 08:54:38] 2025-11-27 13:54:07,798 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 08:54:38] 2025-11-27 13:54:07,810 | INFO     | sufficient remaining disk space (24925700096 B)
[2025-11-27 08:54:38] 2025-11-27 13:54:07,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:54:38] 2025-11-27 13:54:07,810 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:54:38] 2025-11-27 13:54:07,811 | INFO     | update_server=False
[2025-11-27 08:54:38] 2025-11-27 13:54:07,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:54:38] 2025-11-27 13:54:07,811 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:54:38] 2025-11-27 13:54:08,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:54:38] 2025-11-27 13:54:08,084 | INFO     | aborting loop
[2025-11-27 08:54:38] 2025-11-27 13:54:08,371 | INFO     | all payload control threads have been joined
[2025-11-27 08:54:38] 2025-11-27 13:54:08,534 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:54:38] 2025-11-27 13:54:08,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:54:38] 2025-11-27 13:54:08,816 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:08,817 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:08,841 | INFO     | [job] validate thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:08,870 | INFO     | all data control threads have been joined
[2025-11-27 08:54:38] 2025-11-27 13:54:09,004 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:09,042 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:09,090 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:09,191 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:09,303 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:09,376 | INFO     | [payload] control thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:09,503 | INFO     | all job control threads have been joined
[2025-11-27 08:54:38] 2025-11-27 13:54:09,856 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:09,872 | INFO     | [data] control thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:09,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:10,143 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:10,508 | INFO     | [job] control thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:10,539 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:12,785 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:54:38] 2025-11-27 13:54:20,157 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:54:38] 2025-11-27 13:54:21,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140243215697728)>', '<ExcThread(monitor, started 140242417870592)>']
[2025-11-27 08:54:38] 2025-11-27 13:54:26,846 | INFO     | all workflow threads have been joined
[2025-11-27 08:54:38] 2025-11-27 13:54:26,846 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:54:38] 2025-11-27 13:54:26,860 | INFO     | traces error code: 0
[2025-11-27 08:54:38] 2025-11-27 13:54:26,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:54:38] 2025-11-27 13:54:38,394 | INFO     | PID=5866 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 08:54:38] 2025-11-27 13:54:38,395 | INFO     | .. there are 3 such processes running
[2025-11-27 08:54:38] 2025-11-27 13:54:38,395 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:54:38] 2025-11-27 13:54:38,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:54:38] 2025-11-27 13:54:38,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:54:38] 2025-11-27 13:54:38,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:54:38] 2025-11-27 13:54:38,396 | INFO     | [monitor] control thread has ended
[2025-11-27 08:54:38] 2025-11-27 13:54:38,520 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:54:38] 2025-11-27 13:54:38,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:54:38] 2025-11-27 13:54:38,525 [wrapper] pilotpid: 5866
[2025-11-27 08:54:38] 2025-11-27 13:54:38,527 [wrapper] Pilot exit status: 0
[2025-11-27 08:54:38] 2025-11-27 13:54:38,534 [wrapper] pandaids: 6897531727
[2025-11-27 08:54:38] 2025-11-27 13:54:38,561 [wrapper] cleanup supervisor_pilot 22629 5867
[2025-11-27 08:54:38] 2025-11-27 13:54:38,564 [wrapper] Test setup, not cleaning
[2025-11-27 08:54:38] 2025-11-27 13:54:38,566 [wrapper] apfmon messages muted
[2025-11-27 08:54:38] 2025-11-27 13:54:38,568 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:54:38] 2025-11-27 13:54:38,570 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:54:38]  *** Error codes and diagnostics ***
[2025-11-27 08:54:38]     "exeErrorCode": 0,
[2025-11-27 08:54:38]     "exeErrorDiag": "",
[2025-11-27 08:54:38]     "pilotErrorCode": 0,
[2025-11-27 08:54:38]     "pilotErrorDiag": "",
[2025-11-27 08:54:38]  *** Listing of results directory ***
[2025-11-27 08:54:38] total 1325196
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 08:54:38] -rwx------ 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas       100 Nov 26 13:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:54:38] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 13:20 run_atlas
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas       105 Nov 26 13:20 job.xml
[2025-11-27 08:54:38] -rw-r--r-- 2 boincer umatlas 408192719 Nov 26 13:20 EVNT.47483658._002309.pool.root.1
[2025-11-27 08:54:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 13:20 start_atlas.sh
[2025-11-27 08:54:38] drwxrwx--x 2 boincer umatlas      4096 Nov 26 13:20 shared
[2025-11-27 08:54:38] -rw-r--r-- 2 boincer umatlas    590102 Nov 26 13:20 input.tar.gz
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas         0 Nov 26 13:20 boinc_lockfile
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas      2786 Nov 26 13:20 pandaJob.out
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas        57 Nov 26 13:20 setup.sh.local
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas    991522 Nov 26 13:20 agis_schedconf.cvmfs.json
[2025-11-27 08:54:38] drwx------ 5 boincer umatlas      4096 Nov 26 13:20 pilot3
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas       533 Nov 27 08:43 boinc_task_state.xml
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas      5953 Nov 27 08:45 init_data.xml
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas 920741626 Nov 27 08:53 HITS.47556161._002922.pool.root.1
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas      1067 Nov 27 08:53 memory_monitor_summary.json
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas   1516240 Nov 27 08:53 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas   2320504 Nov 27 08:54 log.47556161._002922.job.log.tgz.1
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas      8660 Nov 27 08:54 heartbeat.json
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 08:54 boinc_mmap_file
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas        29 Nov 27 08:54 wrapper_checkpoint.txt
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas        95 Nov 27 08:54 pilot_heartbeat.json
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas       819 Nov 27 08:54 pilotlog.txt
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas   9754808 Nov 27 08:54 log.47556161._002922.job.log.1
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas       353 Nov 27 08:54 output.list
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas       620 Nov 27 08:54 runtime_log
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas  12093440 Nov 27 08:54 result.tar.gz
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas       667 Nov 27 08:54 zQYKDmgaBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpcJKDmSl4Gwn.diag
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 08:54 runtime_log.err
[2025-11-27 08:54:38] -rw-r--r-- 1 boincer umatlas     21309 Nov 27 08:54 stderr.txt
[2025-11-27 08:54:38] HITS file was successfully produced:
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas 920741626 Nov 27 08:53 shared/HITS.pool.root.1
[2025-11-27 08:54:38]  *** Contents of shared directory: ***
[2025-11-27 08:54:38] total 1310204
[2025-11-27 08:54:38] -rw-r--r-- 2 boincer umatlas 408192719 Nov 26 13:20 ATLAS.root_0
[2025-11-27 08:54:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 13:20 start_atlas.sh
[2025-11-27 08:54:38] -rw-r--r-- 2 boincer umatlas    590102 Nov 26 13:20 input.tar.gz
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas 920741626 Nov 27 08:53 HITS.pool.root.1
[2025-11-27 08:54:38] -rw------- 1 boincer umatlas  12093440 Nov 27 08:54 result.tar.gz
08:54:40 (1756): run_atlas exited; CPU time 540584.445896
08:54:40 (1756): called boinc_finish(0)

</stderr_txt>
]]>

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