Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:04:14 (3149716): wrapper (7.7.26015): starting
14:04:14 (3149716): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 14:04:14] Arguments: --nthreads 8
[2025-11-26 14:04:14] Threads: 8
[2025-11-26 14:04:14] Checking for CVMFS
[2025-11-26 14:04:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:04:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:04:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:04:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:04:15] 2.13.2.0 6491 36899 248016 153331 1 721 26141441 40960000 30162 16776704 0 157832176 99.575 162768724 40267 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 14:04:15] CVMFS is ok
[2025-11-26 14:04:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:04:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:04:15] Further information can be found at the LHC@home message board.
[2025-11-26 14:04:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:04:15] Checking for apptainer binary...
[2025-11-26 14:04:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:04:15] Running /usr/bin/apptainer --version
[2025-11-26 14:04:15] apptainer version 1.4.4-1.el9
[2025-11-26 14:04:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:04:15] c-212-20.aglt2.org
[2025-11-26 14:04:15] apptainer works
[2025-11-26 14:04:15] Set ATHENA_PROC_NUMBER=8
[2025-11-26 14:04:15] Set ATHENA_CORE_NUMBER=8
[2025-11-26 14:04:15] Starting ATLAS job with PandaID=6891591837
[2025-11-26 14:04:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:57:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:57:29] 2025-11-27 10:56:11,586 | INFO     | time since job start (57091s) is within the limit (172800.0s)
[2025-11-27 05:57:29] 2025-11-27 10:56:12,264 | INFO     | monitor loop #3371: job 0:6891591837 is in state 'finished'
[2025-11-27 05:57:29] 2025-11-27 10:56:12,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:57:29] 2025-11-27 10:56:13,604 | INFO     | time since job start (57093s) is within the limit (172800.0s)
[2025-11-27 05:57:29] 2025-11-27 10:56:14,768 | INFO     | monitor loop #3372: job 0:6891591837 is in state 'finished'
[2025-11-27 05:57:29] 2025-11-27 10:56:14,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:57:29] 2025-11-27 10:56:15,611 | INFO     | time since job start (57095s) is within the limit (172800.0s)
[2025-11-27 05:57:29] 2025-11-27 10:56:17,272 | INFO     | monitor loop #3373: job 0:6891591837 is in state 'finished'
[2025-11-27 05:57:29] 2025-11-27 10:56:17,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:57:29] 2025-11-27 10:56:17,619 | INFO     | time since job start (57097s) is within the limit (172800.0s)
[2025-11-27 05:57:29] 2025-11-27 10:56:19,626 | INFO     | time since job start (57099s) is within the limit (172800.0s)
[2025-11-27 05:57:29] 2025-11-27 10:56:19,780 | INFO     | monitor loop #3374: job 0:6891591837 is in state 'finished'
[2025-11-27 05:57:29] 2025-11-27 10:56:19,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:57:29] 2025-11-27 10:56:22,284 | INFO     | monitor loop #3375: job 0:6891591837 is in state 'finished'
[2025-11-27 05:57:29] 2025-11-27 10:56:22,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:57:29] 2025-11-27 10:56:22,585 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:57:29] 2025-11-27 10:56:22,718 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3191.080802083334
[2025-11-27 05:57:29] 2025-11-27 10:56:22,843 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891591837/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:57:29] 2025-11-27 10:56:22,844 | INFO     | extracted standard info from prmon json
[2025-11-27 05:57:29] 2025-11-27 10:56:22,844 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:57:29] 2025-11-27 10:56:22,844 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:57:29] 2025-11-27 10:56:22,874 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:57:29] 2025-11-27 10:56:22,875 | INFO     | sum of square deviations: 253496462669.2025
[2025-11-27 05:57:29] 2025-11-27 10:56:22,914 | INFO     | sum of deviations: -113496852847.17566
[2025-11-27 05:57:29] 2025-11-27 10:56:22,918 | INFO     | mean x: 1764212427.6620321
[2025-11-27 05:57:29] 2025-11-27 10:56:22,918 | INFO     | mean y: 2888473.113368984
[2025-11-27 05:57:29] 2025-11-27 10:56:22,918 | INFO     | intersect: 792771519.94234
[2025-11-27 05:57:29] 2025-11-27 10:56:22,919 | INFO     | chi2: 25.123827651830034
[2025-11-27 05:57:29] 2025-11-27 10:56:22,924 | INFO     | sum of square deviations: 249452633344.43112
[2025-11-27 05:57:29] 2025-11-27 10:56:22,964 | INFO     | sum of deviations: 190326090080.76382
[2025-11-27 05:57:29] 2025-11-27 10:56:22,964 | INFO     | mean x: 1764212275.175269
[2025-11-27 05:57:29] 2025-11-27 10:56:22,965 | INFO     | mean y: 2899926.946236559
[2025-11-27 05:57:29] 2025-11-27 10:56:22,965 | INFO     | intersect: -1343149701.4133732
[2025-11-27 05:57:29] 2025-11-27 10:56:22,965 | INFO     | chi2: 21.796149533454187
[2025-11-27 05:57:29] 2025-11-27 10:56:22,966 | INFO     | current chi2=21.796149533454187 (change=13.245108048388705 %)
[2025-11-27 05:57:29] 2025-11-27 10:56:22,966 | INFO     | right removable region: 929
[2025-11-27 05:57:29] 2025-11-27 10:56:22,970 | INFO     | sum of square deviations: 249451228636.43094
[2025-11-27 05:57:29] 2025-11-27 10:56:23,012 | INFO     | sum of deviations: -385472052548.37103
[2025-11-27 05:57:29] 2025-11-27 10:56:23,012 | INFO     | mean x: 1764212580.175269
[2025-11-27 05:57:29] 2025-11-27 10:56:23,012 | INFO     | mean y: 2898713.9838709678
[2025-11-27 05:57:29] 2025-11-27 10:56:23,012 | INFO     | intersect: 2729101539.7995
[2025-11-27 05:57:29] 2025-11-27 10:56:23,013 | INFO     | chi2: 22.71962544050223
[2025-11-27 05:57:29] 2025-11-27 10:56:23,013 | INFO     | current chi2=22.71962544050223 (change=9.569410539849327 %)
[2025-11-27 05:57:29] 2025-11-27 10:56:23,013 | INFO     | left removable region: 10
[2025-11-27 05:57:29] 2025-11-27 10:56:23,018 | INFO     | sum of square deviations: 240705740903.90417
[2025-11-27 05:57:29] 2025-11-27 10:56:23,066 | INFO     | sum of deviations: -76029194495.7753
[2025-11-27 05:57:29] 2025-11-27 10:56:23,066 | INFO     | mean x: 1764212549.6974974
[2025-11-27 05:57:29] 2025-11-27 10:56:23,067 | INFO     | mean y: 2914456.533188248
[2025-11-27 05:57:29] 2025-11-27 10:56:23,067 | INFO     | intersect: 560157746.9056743
[2025-11-27 05:57:29] 2025-11-27 10:56:23,067 | INFO     | chi2: 18.747534622928498
[2025-11-27 05:57:29] 2025-11-27 10:56:23,068 | INFO     | current memory leak: -0.32 B/s (using 919 data points, chi2=18.75)
[2025-11-27 05:57:29] 2025-11-27 10:56:23,068 | INFO     | could have reported an average CPU frequency of 3141 MHz (35 samples)
[2025-11-27 05:57:29] 2025-11-27 10:56:23,069 | INFO     | ..............................
[2025-11-27 05:57:29] 2025-11-27 10:56:23,069 | INFO     | . Timing measurements:
[2025-11-27 05:57:29] 2025-11-27 10:56:23,069 | INFO     | . get job = 0 s
[2025-11-27 05:57:29] 2025-11-27 10:56:23,069 | INFO     | . initial setup = 3 s
[2025-11-27 05:57:29] 2025-11-27 10:56:23,073 | INFO     | . payload setup = 17 s
[2025-11-27 05:57:29] 2025-11-27 10:56:23,073 | INFO     | . stage-in = 0 s
[2025-11-27 05:57:29] 2025-11-27 10:56:23,073 | INFO     | . payload execution = 57009 s
[2025-11-27 05:57:29] 2025-11-27 10:56:23,073 | INFO     | . stage-out = 5 s
[2025-11-27 05:57:29] 2025-11-27 10:56:23,073 | INFO     | . log creation = 1 s
[2025-11-27 05:57:29] 2025-11-27 10:56:23,073 | INFO     | ..............................
[2025-11-27 05:57:29] 2025-11-27 10:56:23,297 | INFO     | 
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | job summary report
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | --------------------------------------------------
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | PanDA job id: 6891591837
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | task id: 47493068
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | errors: (none)
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | pilot state: finished 
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | transexitcode: 0
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | exeerrorcode: 0
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | exeerrordiag: 
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | exitcode: 0
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | exitmsg: OK
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | cpuconsumptiontime: 197770 s
[2025-11-27 05:57:29] 2025-11-27 10:56:23,298 | INFO     | nevents: 1000
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | neventsw: 0
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | pid: 3163510
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | pgrp: 3163510
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | corecount: 8
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | event service: False
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | sizes: {0: 2284303, 11: 2284593, 22: 2284593, 57031: 2335091, 57032: 2335090, 57037: 2344140, 57039: 2344324, 57071: 2344570}
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | --------------------------------------------------
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | 
[2025-11-27 05:57:29] 2025-11-27 10:56:23,299 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 05:57:29] 2025-11-27 10:56:23,352 | INFO     | PID=3155397 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:57:29] 2025-11-27 10:56:23,352 | INFO     | .. there are 33 such processes running
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:57:29] 2025-11-27 10:56:23,413 | INFO     | job 6891591837 has completed (purged errors)
[2025-11-27 05:57:29] 2025-11-27 10:56:23,414 | INFO     | overall cleanup function is called
[2025-11-27 05:57:29] 2025-11-27 10:56:24,480 | INFO     | --- collectZombieJob: --- 10, [3163510]
[2025-11-27 05:57:29] 2025-11-27 10:56:24,480 | INFO     | zombie collector waiting for pid 3163510
[2025-11-27 05:57:29] 2025-11-27 10:56:24,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:57:29] 2025-11-27 10:56:24,480 | INFO     | collected zombie processes
[2025-11-27 05:57:29] 2025-11-27 10:56:24,480 | INFO     | will attempt to kill all subprocesses of pid=3163510
[2025-11-27 05:57:29] 2025-11-27 10:56:25,060 | INFO     | process IDs to be killed: [3163510] (in reverse order)
[2025-11-27 05:57:29] 2025-11-27 10:56:25,287 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:57:29] 2025-11-27 10:56:25,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:57:29] 2025-11-27 10:56:25,329 | INFO     | did not find any defunct processes belonging to 3163510
[2025-11-27 05:57:29] 2025-11-27 10:56:25,372 | INFO     | did not find any defunct processes belonging to 3163510
[2025-11-27 05:57:29] 2025-11-27 10:56:25,374 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:57:29] 2025-11-27 10:56:25,374 | INFO     | ready for new job
[2025-11-27 05:57:29] 2025-11-27 10:56:25,378 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:57:29] 2025-11-27 10:56:25,382 | INFO     | ***************************************
[2025-11-27 05:57:29] 2025-11-27 10:56:25,383 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:57:29] 2025-11-27 10:56:25,383 | INFO     | ***************************************
[2025-11-27 05:57:29] 2025-11-27 10:56:25,383 | INFO     | 
[2025-11-27 05:57:29] 2025-11-27 10:56:25,393 | INFO     | architecture information:
[2025-11-27 05:57:29] 2025-11-27 10:56:25,394 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:57:29] 2025-11-27 10:56:25,433 | INFO     | cat /etc/os-release:
[2025-11-27 05:57:29] NAME="CentOS Linux"
[2025-11-27 05:57:29] VERSION="7 (Core)"
[2025-11-27 05:57:29] ID="centos"
[2025-11-27 05:57:29] ID_LIKE="rhel fedora"
[2025-11-27 05:57:29] VERSION_ID="7"
[2025-11-27 05:57:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:57:29] ANSI_COLOR="0;31"
[2025-11-27 05:57:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:57:29] HOME_URL="https://www.centos.org/"
[2025-11-27 05:57:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:57:29] 
[2025-11-27 05:57:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:57:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:57:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:57:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:57:29] 
[2025-11-27 05:57:29] 2025-11-27 10:56:25,433 | INFO     | ***************************************
[2025-11-27 05:57:29] 2025-11-27 10:56:25,937 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 05:57:29] 2025-11-27 10:56:25,986 | INFO     | sufficient remaining disk space (120027348992 B)
[2025-11-27 05:57:29] 2025-11-27 10:56:25,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:57:29] 2025-11-27 10:56:25,987 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:57:29] 2025-11-27 10:56:25,987 | INFO     | update_server=False
[2025-11-27 05:57:29] 2025-11-27 10:56:25,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:57:29] 2025-11-27 10:56:25,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:57:29] 2025-11-27 10:56:25,988 | INFO     | aborting loop
[2025-11-27 05:57:29] 2025-11-27 10:56:26,541 | INFO     | all payload control threads have been joined
[2025-11-27 05:57:29] 2025-11-27 10:56:26,662 | INFO     | all job control threads have been joined
[2025-11-27 05:57:29] 2025-11-27 10:56:26,992 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:26,994 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:27,039 | INFO     | all data control threads have been joined
[2025-11-27 05:57:29] 2025-11-27 10:56:27,110 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:27,375 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:57:29] 2025-11-27 10:56:27,547 | INFO     | [payload] control thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:27,644 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:27,668 | INFO     | [job] control thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:27,686 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:27,806 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:27,857 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:28,045 | INFO     | [data] control thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:28,128 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:28,188 | INFO     | [job] validate thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:28,259 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:28,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:57:29] 2025-11-27 10:56:28,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:57:29] 2025-11-27 10:56:29,321 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:29,381 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:32,814 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:57:29] 2025-11-27 10:56:57,502 | INFO     | PID=3155397 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:57:29] 2025-11-27 10:56:57,502 | INFO     | .. there are 33 such processes running
[2025-11-27 05:57:29] 2025-11-27 10:56:57,503 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:57:29] 2025-11-27 10:56:57,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:57:29] 2025-11-27 10:56:57,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:57:29] 2025-11-27 10:57:22,043 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:57:29] 2025-11-27 10:57:22,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139654257334080)>', '<ExcThread(monitor, started 139653906671360)>']
[2025-11-27 05:57:29] 2025-11-27 10:57:22,682 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:57:29] 2025-11-27 10:57:22,682 | INFO     | [monitor] control thread has ended
[2025-11-27 05:57:29] 2025-11-27 10:57:27,537 | INFO     | all workflow threads have been joined
[2025-11-27 05:57:29] 2025-11-27 10:57:27,537 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:57:29] 2025-11-27 10:57:27,537 | INFO     | traces error code: 0
[2025-11-27 05:57:29] 2025-11-27 10:57:27,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:57:29] 2025-11-27 10:57:27,990 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:57:29] 2025-11-27 10:57:28,009 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:57:29] 2025-11-27 10:57:28,046 [wrapper] pilotpid: 3155397
[2025-11-27 05:57:29] 2025-11-27 10:57:28,066 [wrapper] Pilot exit status: 0
[2025-11-27 05:57:29] 2025-11-27 10:57:28,220 [wrapper] pandaids: 6891591837
[2025-11-27 05:57:29] 2025-11-27 10:57:28,462 [wrapper] cleanup supervisor_pilot 3495932 3155398
[2025-11-27 05:57:29] 2025-11-27 10:57:28,476 [wrapper] Test setup, not cleaning
[2025-11-27 05:57:29] 2025-11-27 10:57:28,505 [wrapper] apfmon messages muted
[2025-11-27 05:57:29] 2025-11-27 10:57:28,533 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:57:29] 2025-11-27 10:57:28,552 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:57:29]  *** Error codes and diagnostics ***
[2025-11-27 05:57:29]     "exeErrorCode": 0,
[2025-11-27 05:57:29]     "exeErrorDiag": "",
[2025-11-27 05:57:29]     "pilotErrorCode": 0,
[2025-11-27 05:57:29]     "pilotErrorDiag": "",
[2025-11-27 05:57:29]  *** Listing of results directory ***
[2025-11-27 05:57:29] total 1318848
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:59 pilot3.tar.gz
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 13:13 queuedata.json
[2025-11-27 05:57:29] -rwx------. 1 boincer umatlas     36292 Nov 18 13:14 runpilot2-wrapper.sh
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas       100 Nov 26 14:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:57:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 14:04 run_atlas
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas       105 Nov 26 14:04 job.xml
[2025-11-27 05:57:29] -rw-r--r--. 2 boincer umatlas 410188725 Nov 26 14:04 EVNT.47493065._000627.pool.root.1
[2025-11-27 05:57:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 14:04 shared
[2025-11-27 05:57:29] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 14:04 input.tar.gz
[2025-11-27 05:57:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 14:04 start_atlas.sh
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas         0 Nov 26 14:04 boinc_lockfile
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas      2772 Nov 26 14:04 pandaJob.out
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas    991522 Nov 26 14:04 agis_schedconf.cvmfs.json
[2025-11-27 05:57:29] drwx------. 5 boincer umatlas      4096 Nov 26 14:04 pilot3
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas       533 Nov 27 05:06 boinc_task_state.xml
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas 917926583 Nov 27 05:54 HITS.47493068._005769.pool.root.1
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 05:55 init_data.xml
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas      1061 Nov 27 05:55 memory_monitor_summary.json
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas   2087756 Nov 27 05:55 log.47493068._005769.job.log.tgz.1
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas      7931 Nov 27 05:56 heartbeat.json
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas        95 Nov 27 05:56 pilot_heartbeat.json
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:57 boinc_mmap_file
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas        29 Nov 27 05:57 wrapper_checkpoint.txt
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas      4825 Nov 27 05:57 pilotlog.txt
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas   7149722 Nov 27 05:57 log.47493068._005769.job.log.1
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas       353 Nov 27 05:57 output.list
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:57 runtime_log
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas   9256960 Nov 27 05:57 result.tar.gz
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas      8704 Nov 27 05:57 runtime_log.err
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas       663 Nov 27 05:57 ptKMDm5Off8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsCGKDm6LgaGm.diag
[2025-11-27 05:57:29] -rw-r--r--. 1 boincer umatlas     21855 Nov 27 05:57 stderr.txt
[2025-11-27 05:57:29] HITS file was successfully produced:
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas 917926583 Nov 27 05:54 shared/HITS.pool.root.1
[2025-11-27 05:57:29]  *** Contents of shared directory: ***
[2025-11-27 05:57:29] total 1306632
[2025-11-27 05:57:29] -rw-r--r--. 2 boincer umatlas 410188725 Nov 26 14:04 ATLAS.root_0
[2025-11-27 05:57:29] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 14:04 input.tar.gz
[2025-11-27 05:57:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 14:04 start_atlas.sh
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas 917926583 Nov 27 05:54 HITS.pool.root.1
[2025-11-27 05:57:29] -rw-------. 1 boincer umatlas   9256960 Nov 27 05:57 result.tar.gz
05:57:31 (3149716): run_atlas exited; CPU time 198667.556453
05:57:31 (3149716): called boinc_finish(0)

</stderr_txt>
]]>

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