Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:58:43 (46925): wrapper (7.7.26015): starting
12:58:43 (46925): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:58:43] Arguments: --nthreads 8
[2025-11-26 12:58:43] Threads: 8
[2025-11-26 12:58:43] Checking for CVMFS
[2025-11-26 12:58:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:58:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:58:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:58:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:58:43] 2.11.2.0 13817 545689 297828 153330 0 82 13500855 18432001 2827 130560 8 260647168 99.607 266420818 24622 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-26 12:58:43] CVMFS is ok
[2025-11-26 12:58:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:58:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:58:43] Further information can be found at the LHC@home message board.
[2025-11-26 12:58:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:58:43] Checking for apptainer binary...
[2025-11-26 12:58:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:58:43] Running /usr/bin/apptainer --version
[2025-11-26 12:58:43] apptainer version 1.3.2-1.el7
[2025-11-26 12:58:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:58:44] c-9-29.aglt2.org
[2025-11-26 12:58:44] apptainer works
[2025-11-26 12:58:44] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:58:44] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:58:44] Starting ATLAS job with PandaID=6891589547
[2025-11-26 12:58:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:13:47]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:13:47] 2025-11-27 11:12:44,903 | INFO     | time since job start (62028s) is within the limit (172800.0s)
[2025-11-27 06:13:47] 2025-11-27 11:12:45,998 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 06:13:47] 2025-11-27 11:12:46,016 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.9268125000012
[2025-11-27 06:13:47] 2025-11-27 11:12:46,023 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891589547/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,024 | INFO     | extracted standard info from prmon json
[2025-11-27 06:13:47] 2025-11-27 11:12:46,024 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:13:47] 2025-11-27 11:12:46,024 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:13:47] 2025-11-27 11:12:46,050 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:13:47] 2025-11-27 11:12:46,052 | INFO     | sum of square deviations: 326169157686.7214
[2025-11-27 06:13:47] 2025-11-27 11:12:46,084 | INFO     | sum of deviations: 1648607598106.434
[2025-11-27 06:13:47] 2025-11-27 11:12:46,084 | INFO     | mean x: 1764210950.6971486
[2025-11-27 06:13:47] 2025-11-27 11:12:46,084 | INFO     | mean y: 2863773.115044248
[2025-11-27 06:13:47] 2025-11-27 11:12:46,085 | INFO     | intersect: -8914262538.304749
[2025-11-27 06:13:47] 2025-11-27 11:12:46,086 | INFO     | chi2: 5.433420674901188
[2025-11-27 06:13:47] 2025-11-27 11:12:46,088 | INFO     | sum of square deviations: 321382251614.2805
[2025-11-27 06:13:47] 2025-11-27 11:12:46,142 | INFO     | sum of deviations: 1965228631763.2717
[2025-11-27 06:13:47] 2025-11-27 11:12:46,143 | INFO     | mean x: 1764210798.200593
[2025-11-27 06:13:47] 2025-11-27 11:12:46,143 | INFO     | mean y: 2873854.550395257
[2025-11-27 06:13:47] 2025-11-27 11:12:46,143 | INFO     | intersect: -10785144325.280174
[2025-11-27 06:13:47] 2025-11-27 11:12:46,145 | INFO     | chi2: 2.57521303805562
[2025-11-27 06:13:47] 2025-11-27 11:12:46,145 | INFO     | current chi2=2.57521303805562 (change=52.60420291122677 %)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,146 | INFO     | sum of square deviations: 316642416191.8131
[2025-11-27 06:13:47] 2025-11-27 11:12:46,215 | INFO     | sum of deviations: 2089670640618.186
[2025-11-27 06:13:47] 2025-11-27 11:12:46,215 | INFO     | mean x: 1764210645.7040715
[2025-11-27 06:13:47] 2025-11-27 11:12:46,215 | INFO     | mean y: 2877854.0039721946
[2025-11-27 06:13:47] 2025-11-27 11:12:46,216 | INFO     | intersect: -11639969097.873125
[2025-11-27 06:13:47] 2025-11-27 11:12:46,217 | INFO     | chi2: 1.982210618156387
[2025-11-27 06:13:47] 2025-11-27 11:12:46,217 | INFO     | current chi2=1.982210618156387 (change=23.027315066211827 %)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,217 | INFO     | right removable region: 1006
[2025-11-27 06:13:47] 2025-11-27 11:12:46,219 | INFO     | sum of square deviations: 321381819124.28046
[2025-11-27 06:13:47] 2025-11-27 11:12:46,265 | INFO     | sum of deviations: 1423817496085.5525
[2025-11-27 06:13:47] 2025-11-27 11:12:46,265 | INFO     | mean x: 1764211103.200593
[2025-11-27 06:13:47] 2025-11-27 11:12:46,266 | INFO     | mean y: 2870921.7460474307
[2025-11-27 06:13:47] 2025-11-27 11:12:46,266 | INFO     | intersect: -7813111458.24672
[2025-11-27 06:13:47] 2025-11-27 11:12:46,267 | INFO     | chi2: 3.7405939285439347
[2025-11-27 06:13:47] 2025-11-27 11:12:46,267 | INFO     | current chi2=3.7405939285439347 (change=31.155819651090038 %)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,269 | INFO     | sum of square deviations: 316641551211.8131
[2025-11-27 06:13:47] 2025-11-27 11:12:46,300 | INFO     | sum of deviations: 1367646498602.069
[2025-11-27 06:13:47] 2025-11-27 11:12:46,300 | INFO     | mean x: 1764211255.7040715
[2025-11-27 06:13:47] 2025-11-27 11:12:46,300 | INFO     | mean y: 2872727.8123138035
[2025-11-27 06:13:47] 2025-11-27 11:12:46,301 | INFO     | intersect: -7617154831.501945
[2025-11-27 06:13:47] 2025-11-27 11:12:46,301 | INFO     | chi2: 3.7070695016437325
[2025-11-27 06:13:47] 2025-11-27 11:12:46,302 | INFO     | current chi2=3.7070695016437325 (change=0.8962327250863051 %)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,302 | INFO     | left removable region: 20
[2025-11-27 06:13:47] 2025-11-27 11:12:46,303 | INFO     | sum of square deviations: 297242140484.68176
[2025-11-27 06:13:47] 2025-11-27 11:12:46,318 | INFO     | sum of deviations: 1721213675413.6982
[2025-11-27 06:13:47] 2025-11-27 11:12:46,318 | INFO     | mean x: 1764211225.2190669
[2025-11-27 06:13:47] 2025-11-27 11:12:46,318 | INFO     | mean y: 2890390.7606490874
[2025-11-27 06:13:47] 2025-11-27 11:12:46,318 | INFO     | intersect: -10212970934.332664
[2025-11-27 06:13:47] 2025-11-27 11:12:46,319 | INFO     | chi2: 0.20291822493901615
[2025-11-27 06:13:47] 2025-11-27 11:12:46,319 | INFO     | current memory leak: 5.79 B/s (using 986 data points, chi2=0.20)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,320 | INFO     | could have reported an average CPU frequency of 2999 MHz (37 samples)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,320 | INFO     | ..............................
[2025-11-27 06:13:47] 2025-11-27 11:12:46,320 | INFO     | . Timing measurements:
[2025-11-27 06:13:47] 2025-11-27 11:12:46,320 | INFO     | . get job = 0 s
[2025-11-27 06:13:47] 2025-11-27 11:12:46,321 | INFO     | . initial setup = 3 s
[2025-11-27 06:13:47] 2025-11-27 11:12:46,321 | INFO     | . payload setup = 5 s
[2025-11-27 06:13:47] 2025-11-27 11:12:46,321 | INFO     | . stage-in = 0 s
[2025-11-27 06:13:47] 2025-11-27 11:12:46,321 | INFO     | . payload execution = 61993 s
[2025-11-27 06:13:47] 2025-11-27 11:12:46,321 | INFO     | . stage-out = 3 s
[2025-11-27 06:13:47] 2025-11-27 11:12:46,321 | INFO     | . log creation = 0 s
[2025-11-27 06:13:47] 2025-11-27 11:12:46,321 | INFO     | ..............................
[2025-11-27 06:13:47] 2025-11-27 11:12:46,384 | INFO     | 
[2025-11-27 06:13:47] 2025-11-27 11:12:46,384 | INFO     | job summary report
[2025-11-27 06:13:47] 2025-11-27 11:12:46,384 | INFO     | --------------------------------------------------
[2025-11-27 06:13:47] 2025-11-27 11:12:46,385 | INFO     | PanDA job id: 6891589547
[2025-11-27 06:13:47] 2025-11-27 11:12:46,385 | INFO     | task id: 47493068
[2025-11-27 06:13:47] 2025-11-27 11:12:46,385 | INFO     | errors: (none)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,385 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:13:47] 2025-11-27 11:12:46,385 | INFO     | pilot state: finished 
[2025-11-27 06:13:47] 2025-11-27 11:12:46,386 | INFO     | transexitcode: 0
[2025-11-27 06:13:47] 2025-11-27 11:12:46,386 | INFO     | exeerrorcode: 0
[2025-11-27 06:13:47] 2025-11-27 11:12:46,386 | INFO     | exeerrordiag: 
[2025-11-27 06:13:47] 2025-11-27 11:12:46,386 | INFO     | exitcode: 0
[2025-11-27 06:13:47] 2025-11-27 11:12:46,386 | INFO     | exitmsg: OK
[2025-11-27 06:13:47] 2025-11-27 11:12:46,386 | INFO     | cpuconsumptiontime: 476809 s
[2025-11-27 06:13:47] 2025-11-27 11:12:46,387 | INFO     | nevents: 1000
[2025-11-27 06:13:47] 2025-11-27 11:12:46,387 | INFO     | neventsw: 0
[2025-11-27 06:13:47] 2025-11-27 11:12:46,387 | INFO     | pid: 9538
[2025-11-27 06:13:47] 2025-11-27 11:12:46,387 | INFO     | pgrp: 9538
[2025-11-27 06:13:47] 2025-11-27 11:12:46,387 | INFO     | corecount: 8
[2025-11-27 06:13:47] 2025-11-27 11:12:46,387 | INFO     | event service: False
[2025-11-27 06:13:47] 2025-11-27 11:12:46,387 | INFO     | sizes: {0: 2283476, 1: 2284332, 5: 2284594, 12: 2284650, 62002: 2337356, 62006: 2346350, 62008: 2346534, 62014: 2346780}
[2025-11-27 06:13:47] 2025-11-27 11:12:46,388 | INFO     | --------------------------------------------------
[2025-11-27 06:13:47] 2025-11-27 11:12:46,388 | INFO     | 
[2025-11-27 06:13:47] 2025-11-27 11:12:46,388 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 06:13:47] 2025-11-27 11:12:46,405 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,405 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,408 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,408 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,408 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,409 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:13:47] 2025-11-27 11:12:46,409 | INFO     | job 6891589547 has completed (purged errors)
[2025-11-27 06:13:47] 2025-11-27 11:12:46,409 | INFO     | overall cleanup function is called
[2025-11-27 06:13:47] 2025-11-27 11:12:46,472 | INFO     | PID=2840 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 06:13:47] 2025-11-27 11:12:46,473 | INFO     | .. there are 4 such processes running
[2025-11-27 06:13:47] 2025-11-27 11:12:47,430 | INFO     | --- collectZombieJob: --- 10, [9538]
[2025-11-27 06:13:47] 2025-11-27 11:12:47,430 | INFO     | zombie collector waiting for pid 9538
[2025-11-27 06:13:47] 2025-11-27 11:12:47,431 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:13:47] 2025-11-27 11:12:47,431 | INFO     | collected zombie processes
[2025-11-27 06:13:47] 2025-11-27 11:12:47,431 | INFO     | will attempt to kill all subprocesses of pid=9538
[2025-11-27 06:13:47] 2025-11-27 11:12:47,673 | INFO     | process IDs to be killed: [9538] (in reverse order)
[2025-11-27 06:13:47] 2025-11-27 11:12:47,749 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:13:47] 2025-11-27 11:12:47,750 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:13:47] 2025-11-27 11:12:47,758 | INFO     | did not find any defunct processes belonging to 9538
[2025-11-27 06:13:47] 2025-11-27 11:12:47,766 | INFO     | did not find any defunct processes belonging to 9538
[2025-11-27 06:13:47] 2025-11-27 11:12:47,767 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:13:47] 2025-11-27 11:12:47,767 | INFO     | ready for new job
[2025-11-27 06:13:47] 2025-11-27 11:12:47,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:13:47] 2025-11-27 11:12:47,772 | INFO     | ***************************************
[2025-11-27 06:13:47] 2025-11-27 11:12:47,773 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:13:47] 2025-11-27 11:12:47,773 | INFO     | ***************************************
[2025-11-27 06:13:47] 2025-11-27 11:12:47,773 | INFO     | 
[2025-11-27 06:13:47] 2025-11-27 11:12:47,775 | INFO     | architecture information:
[2025-11-27 06:13:47] 2025-11-27 11:12:47,775 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:13:47] 2025-11-27 11:12:47,817 | INFO     | cat /etc/os-release:
[2025-11-27 06:13:47] NAME="CentOS Linux"
[2025-11-27 06:13:47] VERSION="7 (Core)"
[2025-11-27 06:13:47] ID="centos"
[2025-11-27 06:13:47] ID_LIKE="rhel fedora"
[2025-11-27 06:13:47] VERSION_ID="7"
[2025-11-27 06:13:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:13:47] ANSI_COLOR="0;31"
[2025-11-27 06:13:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:13:47] HOME_URL="https://www.centos.org/"
[2025-11-27 06:13:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:13:47] 
[2025-11-27 06:13:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:13:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:13:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:13:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:13:47] 
[2025-11-27 06:13:47] 2025-11-27 11:12:47,817 | INFO     | ***************************************
[2025-11-27 06:13:47] 2025-11-27 11:12:48,319 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 06:13:47] 2025-11-27 11:12:48,344 | INFO     | sufficient remaining disk space (100655955968 B)
[2025-11-27 06:13:47] 2025-11-27 11:12:48,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:13:47] 2025-11-27 11:12:48,344 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:13:47] 2025-11-27 11:12:48,345 | INFO     | update_server=False
[2025-11-27 06:13:47] 2025-11-27 11:12:48,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:13:47] 2025-11-27 11:12:48,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:13:47] 2025-11-27 11:12:48,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:13:47] 2025-11-27 11:12:48,347 | INFO     | aborting loop
[2025-11-27 06:13:47] 2025-11-27 11:12:48,475 | INFO     | all data control threads have been joined
[2025-11-27 06:13:47] 2025-11-27 11:12:48,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:13:47] 2025-11-27 11:12:49,350 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,352 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,352 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,370 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,477 | INFO     | all job control threads have been joined
[2025-11-27 06:13:47] 2025-11-27 11:12:49,480 | INFO     | [data] control thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,491 | INFO     | all payload control threads have been joined
[2025-11-27 06:13:47] 2025-11-27 11:12:49,548 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,646 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,647 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,668 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:49,999 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:50,104 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:50,256 | INFO     | [job] validate thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:50,483 | INFO     | [job] control thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:50,497 | INFO     | [payload] control thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:50,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:13:47] 2025-11-27 11:12:50,738 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:12:54,743 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:13:47] 2025-11-27 11:13:18,812 | INFO     | PID=2840 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 06:13:47] 2025-11-27 11:13:18,812 | INFO     | .. there are 4 such processes running
[2025-11-27 06:13:47] 2025-11-27 11:13:18,812 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:13:47] 2025-11-27 11:13:18,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:13:47] 2025-11-27 11:13:18,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:13:47] 2025-11-27 11:13:40,166 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:13:47] 2025-11-27 11:13:42,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139682629756736)>', '<ExcThread(monitor, started 139682050463488)>']
[2025-11-27 06:13:47] 2025-11-27 11:13:42,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:13:47] 2025-11-27 11:13:42,949 | INFO     | [monitor] control thread has ended
[2025-11-27 06:13:47] 2025-11-27 11:13:47,253 | INFO     | all workflow threads have been joined
[2025-11-27 06:13:47] 2025-11-27 11:13:47,253 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:13:47] 2025-11-27 11:13:47,254 | INFO     | traces error code: 0
[2025-11-27 06:13:47] 2025-11-27 11:13:47,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:13:47] 2025-11-27 11:13:47,363 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:13:47] 2025-11-27 11:13:47,366 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:13:47] 2025-11-27 11:13:47,368 [wrapper] pilotpid: 2840
[2025-11-27 06:13:47] 2025-11-27 11:13:47,370 [wrapper] Pilot exit status: 0
[2025-11-27 06:13:47] 2025-11-27 11:13:47,378 [wrapper] pandaids: 6891589547
[2025-11-27 06:13:47] 2025-11-27 11:13:47,415 [wrapper] cleanup supervisor_pilot 37545 2841
[2025-11-27 06:13:47] 2025-11-27 11:13:47,417 [wrapper] Test setup, not cleaning
[2025-11-27 06:13:47] 2025-11-27 11:13:47,419 [wrapper] apfmon messages muted
[2025-11-27 06:13:47] 2025-11-27 11:13:47,421 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:13:47] 2025-11-27 11:13:47,423 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:13:47]  *** Error codes and diagnostics ***
[2025-11-27 06:13:47]     "exeErrorCode": 0,
[2025-11-27 06:13:47]     "exeErrorDiag": "",
[2025-11-27 06:13:47]     "pilotErrorCode": 0,
[2025-11-27 06:13:47]     "pilotErrorDiag": "",
[2025-11-27 06:13:47]  *** Listing of results directory ***
[2025-11-27 06:13:47] total 1305940
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 12:46 pilot3.tar.gz
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 12:50 queuedata.json
[2025-11-27 06:13:47] -rwx------ 1 boincer umatlas     36292 Nov 18 12:51 runpilot2-wrapper.sh
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas       100 Nov 26 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:13:47] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 12:58 run_atlas
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas       105 Nov 26 12:58 job.xml
[2025-11-27 06:13:47] -rw-r--r-- 2 boincer umatlas 407223835 Nov 26 12:58 EVNT.47493065._000538.pool.root.1
[2025-11-27 06:13:47] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 12:58 start_atlas.sh
[2025-11-27 06:13:47] drwxrwx--x 2 boincer umatlas      4096 Nov 26 12:58 shared
[2025-11-27 06:13:47] -rw-r--r-- 2 boincer umatlas    590096 Nov 26 12:58 input.tar.gz
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas         0 Nov 26 12:58 boinc_lockfile
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 12:58 pandaJob.out
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas    991530 Nov 26 12:58 agis_schedconf.cvmfs.json
[2025-11-27 06:13:47] drwx------ 5 boincer umatlas      4096 Nov 26 12:58 pilot3
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas       533 Nov 27 06:00 boinc_task_state.xml
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas      6038 Nov 27 06:10 init_data.xml
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas 904753409 Nov 27 06:12 HITS.47493068._005378.pool.root.1
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas      1061 Nov 27 06:12 memory_monitor_summary.json
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas   1516240 Nov 27 06:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas   2211687 Nov 27 06:12 log.47493068._005378.job.log.tgz.1
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas        95 Nov 27 06:12 pilot_heartbeat.json
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas      8650 Nov 27 06:12 heartbeat.json
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 06:13 boinc_mmap_file
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas        29 Nov 27 06:13 wrapper_checkpoint.txt
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas      4821 Nov 27 06:13 pilotlog.txt
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas   8482888 Nov 27 06:13 log.47493068._005378.job.log.1
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas       353 Nov 27 06:13 output.list
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas       620 Nov 27 06:13 runtime_log
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas  10711040 Nov 27 06:13 result.tar.gz
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas       665 Nov 27 06:13 u78KDmQ2ef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmT8FKDmFlci1n.diag
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas      8694 Nov 27 06:13 runtime_log.err
[2025-11-27 06:13:47] -rw-r--r-- 1 boincer umatlas     21364 Nov 27 06:13 stderr.txt
[2025-11-27 06:13:47] HITS file was successfully produced:
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas 904753409 Nov 27 06:12 shared/HITS.pool.root.1
[2025-11-27 06:13:47]  *** Contents of shared directory: ***
[2025-11-27 06:13:47] total 1292296
[2025-11-27 06:13:47] -rw-r--r-- 2 boincer umatlas 407223835 Nov 26 12:58 ATLAS.root_0
[2025-11-27 06:13:47] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 12:58 start_atlas.sh
[2025-11-27 06:13:47] -rw-r--r-- 2 boincer umatlas    590096 Nov 26 12:58 input.tar.gz
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas 904753409 Nov 27 06:12 HITS.pool.root.1
[2025-11-27 06:13:47] -rw------- 1 boincer umatlas  10711040 Nov 27 06:13 result.tar.gz
06:13:49 (46925): run_atlas exited; CPU time 476777.305010
06:13:49 (46925): called boinc_finish(0)

</stderr_txt>
]]>

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