Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:15:31 (4140079): wrapper (7.7.26015): starting
13:15:31 (4140079): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:15:31] Arguments: --nthreads 8
[2025-11-26 13:15:31] Threads: 8
[2025-11-26 13:15:31] Checking for CVMFS
[2025-11-26 13:15:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:15:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:15:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:15:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:15:32] 2.10.1.0 4440 252218 166412 153331 3 5 10439906 18432001 3769 130560 2 280540932 99.988 10203567 6504 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-26 13:15:32] CVMFS is ok
[2025-11-26 13:15:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:15:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:15:32] Further information can be found at the LHC@home message board.
[2025-11-26 13:15:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:15:32] Checking for apptainer binary...
[2025-11-26 13:15:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:15:32] Running /usr/bin/apptainer --version
[2025-11-26 13:15:32] apptainer version 1.1.9-1.el8
[2025-11-26 13:15:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:15:32] c-16-31.aglt2.org
[2025-11-26 13:15:32] apptainer works
[2025-11-26 13:15:32] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:15:32] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:15:32] Starting ATLAS job with PandaID=6891586508
[2025-11-26 13:15:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:10:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:10:40] 2025-11-27 12:09:53,877 | INFO     | PID=4146812 has CPU usage=20.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 07:10:40] 2025-11-27 12:09:53,877 | INFO     | .. there are 5 such processes running
[2025-11-27 07:10:40] 2025-11-27 12:09:54,073 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:10:40] 2025-11-27 12:09:54,074 | INFO     | job 6891586508 has state=finished
[2025-11-27 07:10:40] 2025-11-27 12:09:54,074 | INFO     | preparing for final server update for job 6891586508 in state='finished'
[2025-11-27 07:10:40] 2025-11-27 12:09:54,075 | INFO     | this job has now completed (state=finished)
[2025-11-27 07:10:40] 2025-11-27 12:09:54,075 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 07:10:40] 2025-11-27 12:09:54,075 | INFO     | log transfer has been attempted: DONE
[2025-11-27 07:10:40] 2025-11-27 12:09:54,075 | INFO     | job 6891586508 has finished - writing final server update
[2025-11-27 07:10:40] 2025-11-27 12:09:54,076 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 07:10:40] 2025-11-27 12:09:54,077 | INFO     | executing command: lscpu
[2025-11-27 07:10:40] 2025-11-27 12:09:54,142 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 07:10:40] 2025-11-27 12:09:54,878 | INFO     | time since job start (64450s) is within the limit (172800.0s)
[2025-11-27 07:10:40] 2025-11-27 12:09:56,079 | INFO     | monitor loop #4597: job 0:6891586508 is in state 'finished'
[2025-11-27 07:10:40] 2025-11-27 12:09:56,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:10:40] 2025-11-27 12:09:56,883 | INFO     | time since job start (64452s) is within the limit (172800.0s)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,135 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 07:10:40] 2025-11-27 12:09:58,157 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2949.8577249999994
[2025-11-27 07:10:40] 2025-11-27 12:09:58,165 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891586508/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,166 | INFO     | extracted standard info from prmon json
[2025-11-27 07:10:40] 2025-11-27 12:09:58,166 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:10:40] 2025-11-27 12:09:58,166 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:10:40] 2025-11-27 12:09:58,195 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:10:40] 2025-11-27 12:09:58,196 | INFO     | sum of square deviations: 365146370910.33984
[2025-11-27 07:10:40] 2025-11-27 12:09:58,230 | INFO     | sum of deviations: 11550719286651.05
[2025-11-27 07:10:40] 2025-11-27 12:09:58,230 | INFO     | mean x: 1764213149.595644
[2025-11-27 07:10:40] 2025-11-27 12:09:58,231 | INFO     | mean y: 3224213.316287879
[2025-11-27 07:10:40] 2025-11-27 12:09:58,231 | INFO     | intersect: -55804343590.23041
[2025-11-27 07:10:40] 2025-11-27 12:09:58,232 | INFO     | chi2: 47.78406235107709
[2025-11-27 07:10:40] 2025-11-27 12:09:58,234 | INFO     | sum of square deviations: 359984146785.29333
[2025-11-27 07:10:40] 2025-11-27 12:09:58,268 | INFO     | sum of deviations: 11918461257752.146
[2025-11-27 07:10:40] 2025-11-27 12:09:58,269 | INFO     | mean x: 1764212997.096099
[2025-11-27 07:10:40] 2025-11-27 12:09:58,269 | INFO     | mean y: 3235074.15699334
[2025-11-27 07:10:40] 2025-11-27 12:09:58,269 | INFO     | intersect: -58406848936.71943
[2025-11-27 07:10:40] 2025-11-27 12:09:58,270 | INFO     | chi2: 44.53461160218928
[2025-11-27 07:10:40] 2025-11-27 12:09:58,271 | INFO     | current chi2=44.53461160218928 (change=6.8002814934686375 %)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,271 | INFO     | right removable region: 1050
[2025-11-27 07:10:40] 2025-11-27 12:09:58,272 | INFO     | sum of square deviations: 359984085175.2933
[2025-11-27 07:10:40] 2025-11-27 12:09:58,306 | INFO     | sum of deviations: 11208881361564.787
[2025-11-27 07:10:40] 2025-11-27 12:09:58,307 | INFO     | mean x: 1764213302.096099
[2025-11-27 07:10:40] 2025-11-27 12:09:58,307 | INFO     | mean y: 3234302.0218839203
[2025-11-27 07:10:40] 2025-11-27 12:09:58,307 | INFO     | intersect: -54929354148.54897
[2025-11-27 07:10:40] 2025-11-27 12:09:58,308 | INFO     | chi2: 45.660568731647096
[2025-11-27 07:10:40] 2025-11-27 12:09:58,309 | INFO     | current chi2=45.660568731647096 (change=4.443936984319895 %)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,309 | INFO     | left removable region: 10
[2025-11-27 07:10:40] 2025-11-27 12:09:58,310 | INFO     | sum of square deviations: 348798876966.1912
[2025-11-27 07:10:40] 2025-11-27 12:09:58,344 | INFO     | sum of deviations: 11467505282067.74
[2025-11-27 07:10:40] 2025-11-27 12:09:58,344 | INFO     | mean x: 1764213271.5971153
[2025-11-27 07:10:40] 2025-11-27 12:09:58,344 | INFO     | mean y: 3249034.314423077
[2025-11-27 07:10:40] 2025-11-27 12:09:58,344 | INFO     | intersect: -57999016301.80624
[2025-11-27 07:10:40] 2025-11-27 12:09:58,346 | INFO     | chi2: 42.24844322795503
[2025-11-27 07:10:40] 2025-11-27 12:09:58,346 | INFO     | current memory leak: 32.88 B/s (using 1040 data points, chi2=42.25)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,347 | INFO     | could have reported an average CPU frequency of 2909 MHz (39 samples)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,348 | INFO     | ..............................
[2025-11-27 07:10:40] 2025-11-27 12:09:58,348 | INFO     | . Timing measurements:
[2025-11-27 07:10:40] 2025-11-27 12:09:58,348 | INFO     | . get job = 0 s
[2025-11-27 07:10:40] 2025-11-27 12:09:58,348 | INFO     | . initial setup = 2 s
[2025-11-27 07:10:40] 2025-11-27 12:09:58,348 | INFO     | . payload setup = 6 s
[2025-11-27 07:10:40] 2025-11-27 12:09:58,349 | INFO     | . stage-in = 0 s
[2025-11-27 07:10:40] 2025-11-27 12:09:58,349 | INFO     | . payload execution = 64417 s
[2025-11-27 07:10:40] 2025-11-27 12:09:58,349 | INFO     | . stage-out = 3 s
[2025-11-27 07:10:40] 2025-11-27 12:09:58,349 | INFO     | . log creation = 0 s
[2025-11-27 07:10:40] 2025-11-27 12:09:58,349 | INFO     | ..............................
[2025-11-27 07:10:40] 2025-11-27 12:09:58,504 | INFO     | 
[2025-11-27 07:10:40] 2025-11-27 12:09:58,504 | INFO     | job summary report
[2025-11-27 07:10:40] 2025-11-27 12:09:58,505 | INFO     | --------------------------------------------------
[2025-11-27 07:10:40] 2025-11-27 12:09:58,505 | INFO     | PanDA job id: 6891586508
[2025-11-27 07:10:40] 2025-11-27 12:09:58,505 | INFO     | task id: 47493068
[2025-11-27 07:10:40] 2025-11-27 12:09:58,505 | INFO     | errors: (none)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,505 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:10:40] 2025-11-27 12:09:58,505 | INFO     | pilot state: finished 
[2025-11-27 07:10:40] 2025-11-27 12:09:58,506 | INFO     | transexitcode: 0
[2025-11-27 07:10:40] 2025-11-27 12:09:58,506 | INFO     | exeerrorcode: 0
[2025-11-27 07:10:40] 2025-11-27 12:09:58,506 | INFO     | exeerrordiag: 
[2025-11-27 07:10:40] 2025-11-27 12:09:58,506 | INFO     | exitcode: 0
[2025-11-27 07:10:40] 2025-11-27 12:09:58,506 | INFO     | exitmsg: OK
[2025-11-27 07:10:40] 2025-11-27 12:09:58,506 | INFO     | cpuconsumptiontime: 477659 s
[2025-11-27 07:10:40] 2025-11-27 12:09:58,506 | INFO     | nevents: 1000
[2025-11-27 07:10:40] 2025-11-27 12:09:58,507 | INFO     | neventsw: 0
[2025-11-27 07:10:40] 2025-11-27 12:09:58,507 | INFO     | pid: 4165276
[2025-11-27 07:10:40] 2025-11-27 12:09:58,507 | INFO     | pgrp: 4165276
[2025-11-27 07:10:40] 2025-11-27 12:09:58,507 | INFO     | corecount: 8
[2025-11-27 07:10:40] 2025-11-27 12:09:58,507 | INFO     | event service: False
[2025-11-27 07:10:40] 2025-11-27 12:09:58,507 | INFO     | sizes: {0: 2284133, 1: 2284332, 4: 2284594, 12: 2284622, 64427: 2339185, 64431: 2348179, 64432: 2348363, 64437: 2348609}
[2025-11-27 07:10:40] 2025-11-27 12:09:58,508 | INFO     | --------------------------------------------------
[2025-11-27 07:10:40] 2025-11-27 12:09:58,508 | INFO     | 
[2025-11-27 07:10:40] 2025-11-27 12:09:58,508 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 07:10:40] 2025-11-27 12:09:58,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,529 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,529 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,530 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,530 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,531 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,531 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,531 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,531 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,532 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:10:40] 2025-11-27 12:09:58,532 | INFO     | job 6891586508 has completed (purged errors)
[2025-11-27 07:10:40] 2025-11-27 12:09:58,532 | INFO     | overall cleanup function is called
[2025-11-27 07:10:40] 2025-11-27 12:09:59,550 | INFO     | --- collectZombieJob: --- 10, [4165276]
[2025-11-27 07:10:40] 2025-11-27 12:09:59,551 | INFO     | zombie collector waiting for pid 4165276
[2025-11-27 07:10:40] 2025-11-27 12:09:59,552 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:10:40] 2025-11-27 12:09:59,552 | INFO     | collected zombie processes
[2025-11-27 07:10:40] 2025-11-27 12:09:59,552 | INFO     | will attempt to kill all subprocesses of pid=4165276
[2025-11-27 07:10:40] 2025-11-27 12:09:59,868 | INFO     | process IDs to be killed: [4165276] (in reverse order)
[2025-11-27 07:10:40] 2025-11-27 12:09:59,969 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:10:40] 2025-11-27 12:09:59,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:10:40] 2025-11-27 12:09:59,986 | INFO     | did not find any defunct processes belonging to 4165276
[2025-11-27 07:10:40] 2025-11-27 12:09:59,998 | INFO     | did not find any defunct processes belonging to 4165276
[2025-11-27 07:10:40] 2025-11-27 12:10:00,000 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:10:40] 2025-11-27 12:10:00,000 | INFO     | ready for new job
[2025-11-27 07:10:40] 2025-11-27 12:10:00,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:10:40] 2025-11-27 12:10:00,007 | INFO     | ***************************************
[2025-11-27 07:10:40] 2025-11-27 12:10:00,007 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:10:40] 2025-11-27 12:10:00,007 | INFO     | ***************************************
[2025-11-27 07:10:40] 2025-11-27 12:10:00,007 | INFO     | 
[2025-11-27 07:10:40] 2025-11-27 12:10:00,021 | INFO     | architecture information:
[2025-11-27 07:10:40] 2025-11-27 12:10:00,021 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:10:40] 2025-11-27 12:10:00,034 | INFO     | cat /etc/os-release:
[2025-11-27 07:10:40] NAME="CentOS Linux"
[2025-11-27 07:10:40] VERSION="7 (Core)"
[2025-11-27 07:10:40] ID="centos"
[2025-11-27 07:10:40] ID_LIKE="rhel fedora"
[2025-11-27 07:10:40] VERSION_ID="7"
[2025-11-27 07:10:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:10:40] ANSI_COLOR="0;31"
[2025-11-27 07:10:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:10:40] HOME_URL="https://www.centos.org/"
[2025-11-27 07:10:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:10:40] 
[2025-11-27 07:10:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:10:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:10:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:10:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:10:40] 
[2025-11-27 07:10:40] 2025-11-27 12:10:00,035 | INFO     | ***************************************
[2025-11-27 07:10:40] 2025-11-27 12:10:00,536 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 07:10:40] 2025-11-27 12:10:00,553 | INFO     | sufficient remaining disk space (99803463680 B)
[2025-11-27 07:10:40] 2025-11-27 12:10:00,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:10:40] 2025-11-27 12:10:00,554 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:10:40] 2025-11-27 12:10:00,554 | INFO     | update_server=False
[2025-11-27 07:10:40] 2025-11-27 12:10:00,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:10:40] 2025-11-27 12:10:00,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:10:40] 2025-11-27 12:10:00,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:10:40] 2025-11-27 12:10:00,556 | INFO     | aborting loop
[2025-11-27 07:10:40] 2025-11-27 12:10:00,714 | INFO     | all data control threads have been joined
[2025-11-27 07:10:40] 2025-11-27 12:10:01,319 | INFO     | all payload control threads have been joined
[2025-11-27 07:10:40] 2025-11-27 12:10:01,328 | INFO     | all job control threads have been joined
[2025-11-27 07:10:40] 2025-11-27 12:10:01,560 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:01,561 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:01,624 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:01,719 | INFO     | [data] control thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:02,212 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:02,324 | INFO     | [payload] control thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:02,333 | INFO     | [job] control thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:02,425 | INFO     | [job] validate thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:02,522 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:02,559 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:02,731 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:02,936 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:03,030 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:03,515 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:10:40] 2025-11-27 12:10:03,767 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:10:40] 2025-11-27 12:10:04,520 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:07,771 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:10,671 | INFO     | job.realtimelogging is not enabled
[2025-11-27 07:10:40] 2025-11-27 12:10:11,676 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:10:40] 2025-11-27 12:10:30,345 | INFO     | PID=4146812 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:10:40] 2025-11-27 12:10:30,346 | INFO     | .. there are 5 such processes running
[2025-11-27 07:10:40] 2025-11-27 12:10:30,347 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:10:40] 2025-11-27 12:10:30,347 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:10:40] 2025-11-27 12:10:30,347 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:10:40] 2025-11-27 12:10:34,102 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:10:40] 2025-11-27 12:10:34,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053107664704)>', '<ExcThread(monitor, started 140052667541248)>']
[2025-11-27 07:10:40] 2025-11-27 12:10:35,368 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:10:40] 2025-11-27 12:10:35,368 | INFO     | [monitor] control thread has ended
[2025-11-27 07:10:40] 2025-11-27 12:10:39,449 | INFO     | all workflow threads have been joined
[2025-11-27 07:10:40] 2025-11-27 12:10:39,449 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:10:40] 2025-11-27 12:10:39,450 | INFO     | traces error code: 0
[2025-11-27 07:10:40] 2025-11-27 12:10:39,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:10:40] 2025-11-27 12:10:39,630 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:10:40] 2025-11-27 12:10:39,632 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:10:40] 2025-11-27 12:10:39,635 [wrapper] pilotpid: 4146812
[2025-11-27 07:10:40] 2025-11-27 12:10:39,637 [wrapper] Pilot exit status: 0
[2025-11-27 07:10:40] 2025-11-27 12:10:39,647 [wrapper] pandaids: 6891586508
[2025-11-27 07:10:40] 2025-11-27 12:10:39,705 [wrapper] cleanup supervisor_pilot 1065903 4146813
[2025-11-27 07:10:40] 2025-11-27 12:10:39,707 [wrapper] Test setup, not cleaning
[2025-11-27 07:10:40] 2025-11-27 12:10:39,710 [wrapper] apfmon messages muted
[2025-11-27 07:10:40] 2025-11-27 12:10:39,712 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:10:40] 2025-11-27 12:10:39,715 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:10:40]  *** Error codes and diagnostics ***
[2025-11-27 07:10:40]     "exeErrorCode": 0,
[2025-11-27 07:10:40]     "exeErrorDiag": "",
[2025-11-27 07:10:40]     "pilotErrorCode": 0,
[2025-11-27 07:10:40]     "pilotErrorDiag": "",
[2025-11-27 07:10:40]  *** Listing of results directory ***
[2025-11-27 07:10:40] total 1322884
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 12:24 pilot3.tar.gz
[2025-11-27 07:10:40] -rwx------ 1 boincer umatlas     36292 Nov 18 12:32 runpilot2-wrapper.sh
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 12:32 queuedata.json
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas       100 Nov 26 13:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:10:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 13:15 run_atlas
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas       105 Nov 26 13:15 job.xml
[2025-11-27 07:10:40] -rw-r--r-- 2 boincer umatlas 409604007 Nov 26 13:15 EVNT.47493065._000493.pool.root.1
[2025-11-27 07:10:40] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 13:15 start_atlas.sh
[2025-11-27 07:10:40] drwxrwx--x 2 boincer umatlas      4096 Nov 26 13:15 shared
[2025-11-27 07:10:40] -rw-r--r-- 2 boincer umatlas    590095 Nov 26 13:15 input.tar.gz
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas         0 Nov 26 13:15 boinc_lockfile
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 13:15 pandaJob.out
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas    991522 Nov 26 13:15 agis_schedconf.cvmfs.json
[2025-11-27 07:10:40] drwx------ 5 boincer umatlas      4096 Nov 26 13:15 pilot3
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas       533 Nov 27 06:56 boinc_task_state.xml
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas 918747995 Nov 27 07:09 HITS.47493068._004929.pool.root.1
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas      6014 Nov 27 07:09 init_data.xml
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas      1065 Nov 27 07:09 memory_monitor_summary.json
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas   1516240 Nov 27 07:09 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas   2253111 Nov 27 07:09 log.47493068._004929.job.log.tgz.1
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas      8647 Nov 27 07:09 heartbeat.json
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas        95 Nov 27 07:10 pilot_heartbeat.json
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas        29 Nov 27 07:10 wrapper_checkpoint.txt
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 07:10 boinc_mmap_file
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas      4895 Nov 27 07:10 pilotlog.txt
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas   8926037 Nov 27 07:10 log.47493068._004929.job.log.1
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas       353 Nov 27 07:10 output.list
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas       620 Nov 27 07:10 runtime_log
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas  11202560 Nov 27 07:10 result.tar.gz
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas      8699 Nov 27 07:10 runtime_log.err
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas       666 Nov 27 07:10 D0VMDmgkef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk4FKDmSYmzOm.diag
[2025-11-27 07:10:40] -rw-r--r-- 1 boincer umatlas     21852 Nov 27 07:10 stderr.txt
[2025-11-27 07:10:40] HITS file was successfully produced:
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas 918747995 Nov 27 07:09 shared/HITS.pool.root.1
[2025-11-27 07:10:40]  *** Contents of shared directory: ***
[2025-11-27 07:10:40] total 1308764
[2025-11-27 07:10:40] -rw-r--r-- 2 boincer umatlas 409604007 Nov 26 13:15 ATLAS.root_0
[2025-11-27 07:10:40] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 13:15 start_atlas.sh
[2025-11-27 07:10:40] -rw-r--r-- 2 boincer umatlas    590095 Nov 26 13:15 input.tar.gz
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas 918747995 Nov 27 07:09 HITS.pool.root.1
[2025-11-27 07:10:40] -rw------- 1 boincer umatlas  11202560 Nov 27 07:10 result.tar.gz
07:10:42 (4140079): run_atlas exited; CPU time 477022.775269
07:10:42 (4140079): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN