Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:50:09 (1659347): wrapper (7.7.26015): starting
09:50:09 (1659347): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 09:50:09] Arguments: --nthreads 12
[2025-11-26 09:50:09] Threads: 12
[2025-11-26 09:50:09] Checking for CVMFS
[2025-11-26 09:50:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:50:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:50:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:50:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:50:12] 2.11.5.0 4091557 28420 237624 153330 2 635 42109068 45568001 33157 130560 0 213069521 99.750 150475115 21783 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 09:50:12] CVMFS is ok
[2025-11-26 09:50:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:50:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:50:12] Further information can be found at the LHC@home message board.
[2025-11-26 09:50:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:50:12] Checking for apptainer binary...
[2025-11-26 09:50:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:50:12] Running /usr/bin/apptainer --version
[2025-11-26 09:50:12] apptainer version 1.4.1-1.el9
[2025-11-26 09:50:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:50:13] wns0073.triumf.lcg
[2025-11-26 09:50:13] apptainer works
[2025-11-26 09:50:13] Set ATHENA_PROC_NUMBER=12
[2025-11-26 09:50:13] Set ATHENA_CORE_NUMBER=12
[2025-11-26 09:50:13] Starting ATLAS job with PandaID=6898177476
[2025-11-26 09:50:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:02:57]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:02:57] 2025-11-26 18:02:19,916 | INFO     | could have reported an average CPU frequency of 1395 MHz (4 samples)
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | ..............................
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . Timing measurements:
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . get job = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . initial setup = 7 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . payload setup = 32 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . stage-in = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . payload execution = 406 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . stage-out = 1 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . log creation = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | ..............................
[2025-11-26 10:02:57] 2025-11-26 18:02:19,918 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:02:57] 2025-11-26 18:02:19,918 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898177476/pilotlog.txt
[2025-11-26 10:02:57] 2025-11-26 18:02:20,088 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 10:02:57] - Log from pilotlog.txt -
[2025-11-26 10:02:57] 2025-11-26 18:02:19,894 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898177476/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:02:57] 2025-11-26 18:02:19,895 | INFO     | extracted standard info from prmon json
[2025-11-26 10:02:57] 2025-11-26 18:02:19,895 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:02:57] 2025-11-26 18:02:19,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:02:57] 2025-11-26 18:02:19,896 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 10:02:57] 2025-11-26 18:02:19,896 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 10:02:57] 2025-11-26 18:02:19,897 | WARNING  | wrong length of table data, x=[1764179609.0, 1764179670.0, 1764179731.0, 1764179792.0, 1764179853.0, 1764179914.0, 1764179975.0], y=[1618.0, 197437.0, 390480.0, 61
[2025-11-26 10:02:57] 2025-11-26 18:02:19,916 | INFO     | could have reported an average CPU frequency of 1395 MHz (4 samples)
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | ..............................
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . Timing measurements:
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . get job = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . initial setup = 7 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . payload setup = 32 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . stage-in = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . payload execution = 406 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . stage-out = 1 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . log creation = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | ..............................
[2025-11-26 10:02:57] 2025-11-26 18:02:19,918 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:02:57] 2025-11-26 18:02:19,918 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898177476/pilotlog.txt
[2025-11-26 10:02:57] 2025-11-26 18:02:20,089 | WARNING  | 
[2025-11-26 10:02:57] [begin log extracts]
[2025-11-26 10:02:57] - Log from pilotlog.txt -
[2025-11-26 10:02:57] 2025-11-26 18:02:19,894 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898177476/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:02:57] 2025-11-26 18:02:19,895 | INFO     | extracted standard info from prmon json
[2025-11-26 10:02:57] 2025-11-26 18:02:19,895 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:02:57] 2025-11-26 18:02:19,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:02:57] 2025-11-26 18:02:19,896 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 10:02:57] 2025-11-26 18:02:19,896 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 10:02:57] 2025-11-26 18:02:19,897 | WARNING  | wrong length of table data, x=[1764179609.0, 1764179670.0, 1764179731.0, 1764179792.0, 1764179853.0, 1764179914.0, 1764179975.0], y=[1618.0, 197437.0, 390480.0, 61
[2025-11-26 10:02:57] 2025-11-26 18:02:19,916 | INFO     | could have reported an average CPU frequency of 1395 MHz (4 samples)
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | ..............................
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . Timing measurements:
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . get job = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . initial setup = 7 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . payload setup = 32 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . stage-in = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . payload execution = 406 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . stage-out = 1 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | . log creation = 0 s
[2025-11-26 10:02:57] 2025-11-26 18:02:19,917 | INFO     | ..............................
[2025-11-26 10:02:57] 2025-11-26 18:02:19,918 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:02:57] 2025-11-26 18:02:19,918 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898177476/pilotlog.txt
[2025-11-26 10:02:57] [end log extracts]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,089 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 10:02:57] 2025-11-26 18:02:20,090 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 10:02:57] 2025-11-26 18:02:20,709 | INFO     | time since job start (654s) is within the limit (172800.0s)
[2025-11-26 10:02:57] 2025-11-26 18:02:20,955 | INFO     | 
[2025-11-26 10:02:57] 2025-11-26 18:02:20,955 | INFO     | job summary report
[2025-11-26 10:02:57] 2025-11-26 18:02:20,955 | INFO     | --------------------------------------------------
[2025-11-26 10:02:57] 2025-11-26 18:02:20,955 | INFO     | PanDA job id: 6898177476
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | task id: 47556173
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 09:59:42,884 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | pilot state: failed 
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | transexitcode: 65
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | exeerrorcode: 65
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | exitcode: 65
[2025-11-26 10:02:57] 2025-11-26 18:02:20,956 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 10:02:57] 2025-11-26 18:02:20,957 | INFO     | cpuconsumptiontime: 80 s
[2025-11-26 10:02:57] 2025-11-26 18:02:20,957 | INFO     | nevents: 0
[2025-11-26 10:02:57] 2025-11-26 18:02:20,957 | INFO     | neventsw: 0
[2025-11-26 10:02:57] 2025-11-26 18:02:20,957 | INFO     | pid: 1685483
[2025-11-26 10:02:57] 2025-11-26 18:02:20,957 | INFO     | pgrp: 1685483
[2025-11-26 10:02:57] 2025-11-26 18:02:20,969 | INFO     | corecount: 12
[2025-11-26 10:02:57] 2025-11-26 18:02:20,969 | INFO     | event service: False
[2025-11-26 10:02:57] 2025-11-26 18:02:20,969 | INFO     | sizes: {0: 2284090, 1: 2284090, 2: 2284317, 3: 2284317, 15: 2284345, 26: 2284373, 31: 2284791, 37: 2284819, 443: 2310388, 446: 2314678, 447: 2314734, 592: 2315208}
[2025-11-26 10:02:57] 2025-11-26 18:02:20,969 | INFO     | --------------------------------------------------
[2025-11-26 10:02:57] 2025-11-26 18:02:20,970 | INFO     | 
[2025-11-26 10:02:57] 2025-11-26 18:02:20,970 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 10:02:57] 2025-11-26 18:02:20,991 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:02:57] 2025-11-26 18:02:20,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:02:57] 2025-11-26 18:02:20,994 | INFO     | job 6898177476 has completed (purged errors)
[2025-11-26 10:02:57] 2025-11-26 18:02:20,994 | INFO     | overall cleanup function is called
[2025-11-26 10:02:57] 2025-11-26 18:02:22,004 | INFO     | --- collectZombieJob: --- 10, [1685483]
[2025-11-26 10:02:57] 2025-11-26 18:02:22,004 | INFO     | zombie collector waiting for pid 1685483
[2025-11-26 10:02:57] 2025-11-26 18:02:22,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:02:57] 2025-11-26 18:02:22,005 | INFO     | collected zombie processes
[2025-11-26 10:02:57] 2025-11-26 18:02:22,005 | INFO     | will attempt to kill all subprocesses of pid=1685483
[2025-11-26 10:02:57] 2025-11-26 18:02:23,161 | INFO     | process IDs to be killed: [1685483] (in reverse order)
[2025-11-26 10:02:57] 2025-11-26 18:02:23,303 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:02:57] 2025-11-26 18:02:23,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:02:57] 2025-11-26 18:02:23,343 | INFO     | did not find any defunct processes belonging to 1685483
[2025-11-26 10:02:57] 2025-11-26 18:02:23,364 | INFO     | did not find any defunct processes belonging to 1685483
[2025-11-26 10:02:57] 2025-11-26 18:02:23,393 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:02:57] 2025-11-26 18:02:23,393 | INFO     | ready for new job
[2025-11-26 10:02:57] 2025-11-26 18:02:23,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:02:57] 2025-11-26 18:02:23,395 | INFO     | ***************************************
[2025-11-26 10:02:57] 2025-11-26 18:02:23,396 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:02:57] 2025-11-26 18:02:23,396 | INFO     | ***************************************
[2025-11-26 10:02:57] 2025-11-26 18:02:23,396 | INFO     | 
[2025-11-26 10:02:57] 2025-11-26 18:02:23,409 | INFO     | architecture information:
[2025-11-26 10:02:57] 2025-11-26 18:02:23,410 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:02:57] 2025-11-26 18:02:23,428 | INFO     | cat /etc/os-release:
[2025-11-26 10:02:57] NAME="CentOS Linux"
[2025-11-26 10:02:57] VERSION="7 (Core)"
[2025-11-26 10:02:57] ID="centos"
[2025-11-26 10:02:57] ID_LIKE="rhel fedora"
[2025-11-26 10:02:57] VERSION_ID="7"
[2025-11-26 10:02:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:02:57] ANSI_COLOR="0;31"
[2025-11-26 10:02:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:02:57] HOME_URL="https://www.centos.org/"
[2025-11-26 10:02:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:02:57] 
[2025-11-26 10:02:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:02:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:02:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:02:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:02:57] 
[2025-11-26 10:02:57] 2025-11-26 18:02:23,429 | INFO     | ***************************************
[2025-11-26 10:02:57] 2025-11-26 18:02:23,934 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 10:02:57] 2025-11-26 18:02:23,997 | INFO     | sufficient remaining disk space (910237368320 B)
[2025-11-26 10:02:57] 2025-11-26 18:02:23,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:02:57] 2025-11-26 18:02:23,997 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:02:57] 2025-11-26 18:02:23,997 | INFO     | update_server=False
[2025-11-26 10:02:57] 2025-11-26 18:02:23,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:02:57] 2025-11-26 18:02:23,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:02:57] 2025-11-26 18:02:23,998 | INFO     | aborting loop
[2025-11-26 10:02:57] 2025-11-26 18:02:24,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:02:57] 2025-11-26 18:02:24,013 | INFO     | all payload control threads have been joined
[2025-11-26 10:02:57] 2025-11-26 18:02:24,723 | INFO     | all data control threads have been joined
[2025-11-26 10:02:57] 2025-11-26 18:02:24,916 | INFO     | all job control threads have been joined
[2025-11-26 10:02:57] 2025-11-26 18:02:25,003 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,004 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,022 | INFO     | [payload] control thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,234 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,291 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,471 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,680 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,729 | INFO     | [data] control thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,861 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,923 | INFO     | [job] control thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:25,975 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:02:57] 2025-11-26 18:02:26,027 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:26,078 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:26,223 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:02:57] 2025-11-26 18:02:26,308 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:26,375 | INFO     | [job] validate thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:26,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:02:57] 2025-11-26 18:02:26,983 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:30,492 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:02:57] 2025-11-26 18:02:31,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042776995648)>', '<ExcThread(monitor, started 140042081126144)>']
[2025-11-26 10:02:57] 2025-11-26 18:02:36,200 | INFO     | all workflow threads have been joined
[2025-11-26 10:02:57] 2025-11-26 18:02:36,200 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:02:57] 2025-11-26 18:02:36,201 | INFO     | traces error code: 0
[2025-11-26 10:02:57] 2025-11-26 18:02:36,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:02:57] 2025-11-26 18:02:55,502 | INFO     | PID=1667479 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:02:57] 2025-11-26 18:02:55,502 | INFO     | .. there are 35 such processes running
[2025-11-26 10:02:57] 2025-11-26 18:02:55,507 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:02:57] 2025-11-26 18:02:55,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:02:57] 2025-11-26 18:02:55,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:02:57] 2025-11-26 18:02:55,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:02:57] 2025-11-26 18:02:55,508 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 10:02:57] 2025-11-26 18:02:55,508 | INFO     | [monitor] control thread has ended
[2025-11-26 10:02:57] 2025-11-26 18:02:55,889 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:02:57] 2025-11-26 18:02:55,900 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:02:57] 2025-11-26 18:02:55,917 [wrapper] pilotpid: 1667479
[2025-11-26 10:02:57] 2025-11-26 18:02:55,929 [wrapper] Pilot exit status: 0
[2025-11-26 10:02:57] 2025-11-26 18:02:56,075 [wrapper] pandaids: 6898177476
[2025-11-26 10:02:57] 2025-11-26 18:02:56,428 [wrapper] cleanup supervisor_pilot 1667486 1667480
[2025-11-26 10:02:57] 2025-11-26 18:02:56,464 [wrapper] Test setup, not cleaning
[2025-11-26 10:02:57] 2025-11-26 18:02:56,484 [wrapper] apfmon messages muted
[2025-11-26 10:02:57] 2025-11-26 18:02:56,596 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:02:57] 2025-11-26 18:02:56,623 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:02:57]  *** Error codes and diagnostics ***
[2025-11-26 10:02:57]     "exeErrorCode": 65,
[2025-11-26 10:02:57]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 10:02:57]     "pilotErrorCode": 1305,
[2025-11-26 10:02:57]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 10:02:57]  *** Listing of results directory ***
[2025-11-26 10:02:57] total 404648
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc    576529 Nov 25 19:33 pilot3.tar.gz
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc      5112 Nov 25 20:06 queuedata.json
[2025-11-26 10:02:57] -rwx------. 1 boinc boinc     36292 Nov 25 20:06 runpilot2-wrapper.sh
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc       100 Nov 26 09:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:02:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 09:50 run_atlas
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc       105 Nov 26 09:50 job.xml
[2025-11-26 10:02:57] -rw-r--r--. 2 boinc boinc 410053151 Nov 26 09:50 EVNT.47483658._003171.pool.root.1
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc      6593 Nov 26 09:50 init_data.xml
[2025-11-26 10:02:57] -rw-r--r--. 2 boinc boinc     15847 Nov 26 09:50 start_atlas.sh
[2025-11-26 10:02:57] drwxrwx--x. 2 boinc boinc      4096 Nov 26 09:50 shared
[2025-11-26 10:02:57] -rw-r--r--. 2 boinc boinc    590103 Nov 26 09:50 input.tar.gz
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc         0 Nov 26 09:50 boinc_lockfile
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc      2785 Nov 26 09:50 pandaJob.out
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc    991530 Nov 26 09:51 agis_schedconf.cvmfs.json
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc   1516240 Nov 26 09:51 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:02:57] drwx------. 5 boinc boinc      4096 Nov 26 09:51 pilot3
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc       525 Nov 26 09:59 boinc_task_state.xml
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc      1018 Nov 26 09:59 memory_monitor_summary.json
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc     53691 Nov 26 09:59 log.47556173._001280.job.log.tgz.1
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc     10338 Nov 26 10:02 heartbeat.json
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc        95 Nov 26 10:02 pilot_heartbeat.json
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc       893 Nov 26 10:02 pilotlog.txt
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc    144233 Nov 26 10:02 log.47556173._001280.job.log.1
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc      8192 Nov 26 10:02 boinc_mmap_file
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc       186 Nov 26 10:02 output.list
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc       620 Nov 26 10:02 runtime_log
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc    215040 Nov 26 10:02 result.tar.gz
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc       647 Nov 26 10:02 zgoMDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7vMKDmsfQNpm.diag
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc      8636 Nov 26 10:02 runtime_log.err
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc     22586 Nov 26 10:02 stderr.txt
[2025-11-26 10:02:57] -rw-r--r--. 1 boinc boinc        23 Nov 26 10:02 wrapper_checkpoint.txt
[2025-11-26 10:02:57] No HITS result produced
[2025-11-26 10:02:57]  *** Contents of shared directory: ***
[2025-11-26 10:02:57] total 401256
[2025-11-26 10:02:57] -rw-r--r--. 2 boinc boinc 410053151 Nov 26 09:50 ATLAS.root_0
[2025-11-26 10:02:57] -rw-r--r--. 2 boinc boinc     15847 Nov 26 09:50 start_atlas.sh
[2025-11-26 10:02:57] -rw-r--r--. 2 boinc boinc    590103 Nov 26 09:50 input.tar.gz
[2025-11-26 10:02:57] -rw-------. 1 boinc boinc    215040 Nov 26 10:02 result.tar.gz
10:02:59 (1659347): run_atlas exited; CPU time 94.608458
10:02:59 (1659347): called boinc_finish(0)

</stderr_txt>
]]>

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