Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 18:33:55 (37732): vboxwrapper version 26210
2025-11-27 18:33:55 (37732): BOINC client version: 8.0.2
2025-11-27 18:33:56 (37732): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-11-27 18:33:56 (37732): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 18:33:56 (37732): Create VM. (boinc_a58688fa79f4f86b, slot#5)
2025-11-27 18:33:57 (37732): Setting Memory Size for VM. (4800MB)
2025-11-27 18:33:58 (37732): Setting CPU Count for VM. (8)
2025-11-27 18:33:59 (37732): Setting Chipset Options for VM.
2025-11-27 18:34:00 (37732): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 18:34:00 (37732): Setting Boot Options for VM.
2025-11-27 18:34:02 (37732): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 18:34:02 (37732): Enabling VM Network Access.
2025-11-27 18:34:03 (37732): Disabling USB Support for VM.
2025-11-27 18:34:04 (37732): Disabling COM Port Support for VM.
2025-11-27 18:34:05 (37732): Disabling LPT Port Support for VM.
2025-11-27 18:34:05 (37732): Disabling Audio Support for VM.
2025-11-27 18:34:06 (37732): Disabling Clipboard Support for VM.
2025-11-27 18:34:06 (37732): Disabling Drag and Drop Support for VM.
2025-11-27 18:34:07 (37732): Adding storage controller(s) to VM.
2025-11-27 18:34:07 (37732): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 18:34:10 (37732): Attempts: 2
2025-11-27 18:34:10 (37732): Adding VirtualBox Guest Additions to VM.
2025-11-27 18:34:11 (37732): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 18:34:11 (37732): forwarding host port 58957 to guest port 80
2025-11-27 18:34:11 (37732): Enabling remote desktop for VM.
2025-11-27 18:34:11 (37732): Required extension pack not installed, remote desktop not enabled.
2025-11-27 18:34:11 (37732): Enabling shared directory for VM.
2025-11-27 18:34:12 (37732): Starting VM using VBoxManage interface. (boinc_a58688fa79f4f86b, slot#5)
2025-11-27 18:34:16 (37732): Successfully started VM. (PID = '36348')
2025-11-27 18:34:16 (37732): Reporting VM Process ID to BOINC.
2025-11-27 18:34:16 (37732): Guest Log: BIOS: VirtualBox 7.1.10
2025-11-27 18:34:16 (37732): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 18:34:16 (37732): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 18:34:16 (37732): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 18:34:16 (37732): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 18:34:16 (37732): Detected: Web Application Enabled (http://localhost:58957)
2025-11-27 18:34:16 (37732): Preference change detected
2025-11-27 18:34:16 (37732): Setting CPU throttle for VM. (100%)
2025-11-27 18:34:16 (37732): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 18:34:18 (37732): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 18:34:18 (37732): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 18:34:21 (37732): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 18:34:21 (37732): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 18:34:21 (37732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 18:34:33 (37732): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 18:34:33 (37732): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 18:35:13 (37732): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 18:35:13 (37732): Guest Log: 00:00:00.000120 main     Log opened 2025-11-27T18:35:12.487304000Z
2025-11-27 18:35:13 (37732): Guest Log: 00:00:00.000190 main     OS Product: Linux
2025-11-27 18:35:13 (37732): Guest Log: 00:00:00.000202 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 18:35:13 (37732): Guest Log: 00:00:00.000212 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 18:35:13 (37732): Guest Log: 00:00:00.000222 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 18:35:13 (37732): Guest Log: 00:00:00.000222 main     Process ID: 1398
2025-11-27 18:35:13 (37732): Guest Log: 00:00:00.000223 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 18:35:13 (37732): Guest Log: 00:00:00.000713 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 18:35:13 (37732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 18:35:13 (37732): Guest Log: [INFO] Mounting shared directory
2025-11-27 18:35:13 (37732): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 18:35:22 (37732): Guest Log: 00:00:10.021597 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 604 505 644 000ns (GuestNow=1 764 264 907 983 047 000 ns GuestLast=1 764 268 512 488 691 000 ns fSetTimeLastLoop=true )
2025-11-27 18:35:33 (37732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 18:35:33 (37732): Guest Log: [INFO] Detected branch: prod
2025-11-27 18:35:34 (37732): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 18:35:34 (37732): Guest Log: Copying input files
2025-11-27 18:35:35 (37732): Guest Log: Copied input files into RunAtlas.
2025-11-27 18:35:35 (37732): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 18:35:35 (37732): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 18:35:35 (37732): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 18:35:35 (37732): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 18:35:44 (37732): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 18:35:45 (37732): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 18:35:45 (37732): Guest Log: 2.6.3.0 1681 0 30184 153377 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 18:35:47 (37732): Guest Log: copied the webapp to /var/www
2025-11-27 18:35:47 (37732): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 18:35:47 (37732): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 18:35:48 (37732): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 18:35:48 (37732): Guest Log:  *** Starting ATLAS job. (PandaID=6898177506 taskID=47556161) ***
2025-11-27 19:35:11 (37732): VM state change detected. (old = 'running', new = 'paused')
2025-11-28 01:43:16 (37732): Preference change detected
2025-11-28 01:43:16 (37732): Setting CPU throttle for VM. (100%)
2025-11-28 01:43:16 (37732): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-28 01:43:16 (37732): VM state change detected. (old = 'paused', new = 'running')
2025-11-28 01:43:24 (37732): Guest Log: 01:01:32.686991 timesync vgsvcTimeSyncWorker: Radical host time change: 22 088 596 000 000ns (HostNow=1 764 290 575 876 000 000 ns HostLast=1 764 268 487 280 000 000 ns)
2025-11-28 01:43:34 (37732): Guest Log: 01:01:42.688128 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 995 228 983 000ns (GuestNow=1 764 290 585 877 289 000 ns GuestLast=1 764 268 590 648 306 000 ns fSetTimeLastLoop=true )
2025-11-28 02:22:31 (37732): Status Report: Elapsed Time: '6000.863447'
2025-11-28 02:22:32 (37732): Status Report: CPU Time: '34735.187500'
2025-11-28 04:02:34 (37732): Status Report: Elapsed Time: '12001.635948'
2025-11-28 04:02:34 (37732): Status Report: CPU Time: '82140.812500'
2025-11-28 05:42:37 (37732): Status Report: Elapsed Time: '18001.662823'
2025-11-28 05:42:40 (37732): Status Report: CPU Time: '129549.859375'
2025-11-28 07:22:40 (37732): Status Report: Elapsed Time: '24002.603401'
2025-11-28 07:22:40 (37732): Status Report: CPU Time: '176864.875000'
2025-11-28 07:49:22 (37732): Guest Log:  *** Job finished ***
2025-11-28 07:49:22 (37732): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:26,083 | INFO     | all workflow threads have been joined
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:26,083 | INFO     | end of generic workflow (traces error code: 0)
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:26,083 | INFO     | traces error code: 0
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:26,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:37,870 | INFO     | PID=6139 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:37,871 | INFO     | found 0 job(s) in 20 queues
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:37,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:37,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:37,871 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:37,871 | INFO     | [monitor] control thread has ended
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,231 [wrapper] ==== pilot stdout END ====
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,235 [wrapper] ==== wrapper stdout RESUME ====
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,239 [wrapper] pilotpid: 6139
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,242 [wrapper] Pilot exit status: 0
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,276 [wrapper] pandaids: 6898177506
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,298 [wrapper] cleanup supervisor_pilot  1199 6140
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,301 [wrapper] Test setup, not cleaning
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,305 [wrapper] apfmon messages muted
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,308 [wrapper] ==== wrapper stdout END ====
2025-11-28 07:49:22 (37732): Guest Log: 2025-11-28 06:57:38,312 [wrapper] ==== wrapper stderr END ====
2025-11-28 07:49:22 (37732): Guest Log:  *** Error codes and diagnostics ***
2025-11-28 07:49:22 (37732): Guest Log:     "exeErrorCode": 0,
2025-11-28 07:49:22 (37732): Guest Log:     "exeErrorDiag": "",
2025-11-28 07:49:22 (37732): Guest Log:     "pilotErrorCode": 0,
2025-11-28 07:49:22 (37732): Guest Log:     "pilotErrorDiag": "",
2025-11-28 07:49:22 (37732): Guest Log:  *** Listing of results directory ***
2025-11-28 07:49:22 (37732): Guest Log: total 911900
2025-11-28 07:49:22 (37732): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 03:33 pilot3.tar.gz
2025-11-28 07:49:22 (37732): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 04:06 queuedata.json
2025-11-28 07:49:22 (37732): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 04:06 runpilot2-wrapper.sh
2025-11-28 07:49:22 (37732): Guest Log: -rwxr-xr-x. 1 atlas atlas      9131 Nov 27 17:35 init_data.xml
2025-11-28 07:49:22 (37732): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 17:35 start_atlas.sh
2025-11-28 07:49:22 (37732): Guest Log: -rwxr-xr-x. 1 atlas atlas    590108 Nov 27 17:35 input.tar.gz
2025-11-28 07:49:22 (37732): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 17:35 EVNT.47483658._002469.pool.root.1 -> /data/./ATLAS.root_0
2025-11-28 07:49:22 (37732): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 27 17:35 pandaJob.out
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas    991231 Nov 27 17:38 agis_schedconf.cvmfs.json
2025-11-28 07:49:22 (37732): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 17:39 pilot3
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas 919604896 Nov 28 06:56 HITS.47556161._004518.pool.root.1
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 28 06:56 memory_monitor_summary.json
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 28 06:56 agis_ddmendpoints.agis.ALL.json
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas   1711799 Nov 28 06:56 log.47556161._004518.job.log.tgz.1
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas      8605 Nov 28 06:57 heartbeat.json
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas        98 Nov 28 06:57 pilot_heartbeat.json
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas       744 Nov 28 06:57 pilotlog.txt
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas   3459103 Nov 28 06:57 log.47556161._004518.job.log.1
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas       353 Nov 28 06:57 output.list
2025-11-28 07:49:22 (37732): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 28 06:57 runtime_log
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas   5191680 Nov 28 06:57 result.tar.gz
2025-11-28 07:49:22 (37732): Guest Log: -rw-r--r--. 1 atlas atlas      8725 Nov 28 06:57 runtime_log.err
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas       655 Nov 28 06:57 D9ALDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9uMKDm2PrPlm.diag
2025-11-28 07:49:22 (37732): Guest Log: Looking for outputfile HITS.47556161._004518.pool.root.1
2025-11-28 07:49:22 (37732): Guest Log: HITS file was successfully produced
2025-11-28 07:49:22 (37732): Guest Log: -rw-------. 1 atlas atlas 919604896 Nov 28 06:56 /home/atlas/RunAtlas/HITS.47556161._004518.pool.root.1
2025-11-28 07:49:26 (37732): Guest Log: Successfully finished the ATLAS job!
2025-11-28 07:49:26 (37732): Guest Log: Copying the results back to the shared directory!
2025-11-28 07:49:26 (37732): Guest Log:  *** Contents of shared directory: ***
2025-11-28 07:49:26 (37732): Guest Log: total 1304444
2025-11-28 07:49:26 (37732): Guest Log: -rwxrwxrwx. 1 root root 410325892 Nov 27 17:33 ATLAS.root_0
2025-11-28 07:49:26 (37732): Guest Log: -rwxrwxrwx. 1 root root 919604896 Nov 28 06:49 HITS.pool.root.1
2025-11-28 07:49:26 (37732): Guest Log: -rwxrwxrwx. 1 root root      9131 Nov 27 17:33 init_data.xml
2025-11-28 07:49:26 (37732): Guest Log: -rwxrwxrwx. 1 root root    590108 Nov 26 17:43 input.tar.gz
2025-11-28 07:49:26 (37732): Guest Log: -rwxrwxrwx. 1 root root   5191680 Nov 28 06:49 result.tar.gz
2025-11-28 07:49:26 (37732): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 17:43 start_atlas.sh
2025-11-28 07:49:26 (37732): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-28 07:49:27 (37732): VM Completion File Detected.
2025-11-28 07:49:27 (37732): Powering off VM.
2025-11-28 07:49:28 (37732): Successfully stopped VM.
2025-11-28 07:49:28 (37732): Deregistering VM. (boinc_a58688fa79f4f86b, slot#5)
2025-11-28 07:49:28 (37732): Removing network bandwidth throttle group from VM.
2025-11-28 07:49:28 (37732): Removing VM from VirtualBox.
2025-11-28 07:49:34 (37732): called boinc_finish(0)

</stderr_txt>
]]>

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