Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:58:25 (1242523): wrapper (7.7.26015): starting
09:58:25 (1242523): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 09:58:25] Arguments: --nthreads 12
[2025-11-26 09:58:25] Threads: 12
[2025-11-26 09:58:25] Checking for CVMFS
[2025-11-26 09:58:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:58:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:58:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:58:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:58:27] 2.11.5.0 2229122 28605 215060 153330 0 738 29335714 45568000 26767 130560 0 281877100 99.798 175543628 29153 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 09:58:27] CVMFS is ok
[2025-11-26 09:58:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:58:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:58:27] Further information can be found at the LHC@home message board.
[2025-11-26 09:58:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:58:27] Checking for apptainer binary...
[2025-11-26 09:58:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:58:27] Running /usr/bin/apptainer --version
[2025-11-26 09:58:27] apptainer version 1.4.1-1.el9
[2025-11-26 09:58:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:58:27] wns0038.triumf.lcg
[2025-11-26 09:58:27] apptainer works
[2025-11-26 09:58:27] Set ATHENA_PROC_NUMBER=12
[2025-11-26 09:58:27] Set ATHENA_CORE_NUMBER=12
[2025-11-26 09:58:27] Starting ATLAS job with PandaID=6898178285
[2025-11-26 09:58:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:05:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | ..............................
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . Timing measurements:
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . get job = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . initial setup = 3 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . payload setup = 11 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . stage-in = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . payload execution = 201 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . stage-out = 1 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . log creation = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | ..............................
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178285/pilotlog.txt
[2025-11-26 10:05:53] 2025-11-26 18:04:53,099 | INFO     | monitor loop #75: job 0:6898178285 is in state 'failed'
[2025-11-26 10:05:53] 2025-11-26 18:04:53,099 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,154 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 10:05:53] - Log from pilotlog.txt -
[2025-11-26 10:05:53] 2025-11-26 18:04:53,020 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:05:53] 2025-11-26 18:04:53,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:05:53] 2025-11-26 18:04:53,020 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 10:05:53] 2025-11-26 18:04:53,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 10:05:53] 2025-11-26 18:04:53,021 | WARNING  | wrong length of table data, x=[1764179969.0, 1764180030.0, 1764180091.0, 1764180152.0], y=[2193.0, 688292.0, 521225.0, 252717.0] (must be same and length>=4)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,021 | INFO     | could have reported an average CPU frequency of 2703 MHz (4 samples)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | ..............................
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . Timing measurements:
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . get job = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . initial setup = 3 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . payload setup = 11 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . stage-in = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . payload execution = 201 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . stage-out = 1 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . log creation = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | ..............................
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178285/pilotlog.txt
[2025-11-26 10:05:53] 2025-11-26 18:04:53,099 | INFO     | monitor loop #75: job 0:6898178285 is in state 'failed'
[2025-11-26 10:05:53] 2025-11-26 18:04:53,099 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,155 | WARNING  | 
[2025-11-26 10:05:53] [begin log extracts]
[2025-11-26 10:05:53] - Log from pilotlog.txt -
[2025-11-26 10:05:53] 2025-11-26 18:04:53,020 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:05:53] 2025-11-26 18:04:53,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:05:53] 2025-11-26 18:04:53,020 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 10:05:53] 2025-11-26 18:04:53,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 10:05:53] 2025-11-26 18:04:53,021 | WARNING  | wrong length of table data, x=[1764179969.0, 1764180030.0, 1764180091.0, 1764180152.0], y=[2193.0, 688292.0, 521225.0, 252717.0] (must be same and length>=4)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,021 | INFO     | could have reported an average CPU frequency of 2703 MHz (4 samples)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | ..............................
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . Timing measurements:
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . get job = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . initial setup = 3 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . payload setup = 11 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . stage-in = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . payload execution = 201 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . stage-out = 1 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | . log creation = 0 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | ..............................
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 10:05:53] 2025-11-26 18:04:53,022 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898178285/pilotlog.txt
[2025-11-26 10:05:53] 2025-11-26 18:04:53,099 | INFO     | monitor loop #75: job 0:6898178285 is in state 'failed'
[2025-11-26 10:05:53] 2025-11-26 18:04:53,099 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-26 10:05:53] [end log extracts]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,155 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,155 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 10:05:53] 2025-11-26 18:04:53,275 | INFO     | time since job start (368s) is within the limit (172800.0s)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,682 | INFO     | 
[2025-11-26 10:05:53] 2025-11-26 18:04:53,682 | INFO     | job summary report
[2025-11-26 10:05:53] 2025-11-26 18:04:53,682 | INFO     | --------------------------------------------------
[2025-11-26 10:05:53] 2025-11-26 18:04:53,682 | INFO     | PanDA job id: 6898178285
[2025-11-26 10:05:53] 2025-11-26 18:04:53,682 | INFO     | task id: 47556161
[2025-11-26 10:05:53] 2025-11-26 18:04:53,682 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 10:02:32,572 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 10:05:53] 2025-11-26 18:04:53,682 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | pilot state: failed 
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | transexitcode: 65
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | exeerrorcode: 65
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | exitcode: 65
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | cpuconsumptiontime: 46 s
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | nevents: 0
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | neventsw: 0
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | pid: 1256245
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | pgrp: 1256245
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | corecount: 12
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | event service: False
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | sizes: {0: 2284261, 9: 2284523, 11: 2284551, 213: 2310000, 214: 2309976, 215: 2314294, 219: 2314450, 349: 2314616}
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | --------------------------------------------------
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | 
[2025-11-26 10:05:53] 2025-11-26 18:04:53,683 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 10:05:53] 2025-11-26 18:04:53,941 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,941 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,942 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:05:53] 2025-11-26 18:04:53,943 | INFO     | job 6898178285 has completed (purged errors)
[2025-11-26 10:05:53] 2025-11-26 18:04:53,943 | INFO     | overall cleanup function is called
[2025-11-26 10:05:53] 2025-11-26 18:04:54,994 | INFO     | --- collectZombieJob: --- 10, [1256245]
[2025-11-26 10:05:53] 2025-11-26 18:04:54,994 | INFO     | zombie collector waiting for pid 1256245
[2025-11-26 10:05:53] 2025-11-26 18:04:54,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:05:53] 2025-11-26 18:04:54,994 | INFO     | collected zombie processes
[2025-11-26 10:05:53] 2025-11-26 18:04:54,994 | INFO     | will attempt to kill all subprocesses of pid=1256245
[2025-11-26 10:05:53] 2025-11-26 18:04:55,667 | INFO     | process IDs to be killed: [1256245] (in reverse order)
[2025-11-26 10:05:53] 2025-11-26 18:04:55,752 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:05:53] 2025-11-26 18:04:55,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:05:53] 2025-11-26 18:04:55,762 | INFO     | did not find any defunct processes belonging to 1256245
[2025-11-26 10:05:53] 2025-11-26 18:04:55,771 | INFO     | did not find any defunct processes belonging to 1256245
[2025-11-26 10:05:53] 2025-11-26 18:04:55,772 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:05:53] 2025-11-26 18:04:55,772 | INFO     | ready for new job
[2025-11-26 10:05:53] 2025-11-26 18:04:55,772 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:05:53] 2025-11-26 18:04:55,773 | INFO     | ***************************************
[2025-11-26 10:05:53] 2025-11-26 18:04:55,773 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:05:53] 2025-11-26 18:04:55,773 | INFO     | ***************************************
[2025-11-26 10:05:53] 2025-11-26 18:04:55,773 | INFO     | 
[2025-11-26 10:05:53] 2025-11-26 18:04:55,775 | INFO     | architecture information:
[2025-11-26 10:05:53] 2025-11-26 18:04:55,783 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:05:53] 2025-11-26 18:04:55,805 | INFO     | cat /etc/os-release:
[2025-11-26 10:05:53] NAME="CentOS Linux"
[2025-11-26 10:05:53] VERSION="7 (Core)"
[2025-11-26 10:05:53] ID="centos"
[2025-11-26 10:05:53] ID_LIKE="rhel fedora"
[2025-11-26 10:05:53] VERSION_ID="7"
[2025-11-26 10:05:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:05:53] ANSI_COLOR="0;31"
[2025-11-26 10:05:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:05:53] HOME_URL="https://www.centos.org/"
[2025-11-26 10:05:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:05:53] 
[2025-11-26 10:05:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:05:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:05:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:05:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:05:53] 
[2025-11-26 10:05:53] 2025-11-26 18:04:55,805 | INFO     | ***************************************
[2025-11-26 10:05:53] 2025-11-26 18:04:56,309 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 10:05:53] 2025-11-26 18:04:56,359 | INFO     | sufficient remaining disk space (1783790305280 B)
[2025-11-26 10:05:53] 2025-11-26 18:04:56,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:05:53] 2025-11-26 18:04:56,360 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:05:53] 2025-11-26 18:04:56,360 | INFO     | update_server=False
[2025-11-26 10:05:53] 2025-11-26 18:04:56,360 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:05:53] 2025-11-26 18:04:56,569 | INFO     | all payload control threads have been joined
[2025-11-26 10:05:53] 2025-11-26 18:04:56,569 | INFO     | all job control threads have been joined
[2025-11-26 10:05:53] 2025-11-26 18:04:56,617 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:05:53] 2025-11-26 18:04:56,617 | INFO     | aborting loop
[2025-11-26 10:05:53] 2025-11-26 18:04:56,674 | INFO     | all data control threads have been joined
[2025-11-26 10:05:53] 2025-11-26 18:04:57,366 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:57,575 | INFO     | [payload] control thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:57,579 | INFO     | [job] control thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:57,623 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:57,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:05:53] 2025-11-26 18:04:57,680 | INFO     | [data] control thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:57,828 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:57,888 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:57,888 | INFO     | [job] validate thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:57,955 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:58,449 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:05:53] 2025-11-26 18:04:58,491 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:58,713 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:58,728 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:58,736 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:59,455 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:04:59,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:05:53] 2025-11-26 18:04:59,676 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:05:03,682 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:05:53] 2025-11-26 18:05:27,478 | INFO     | PID=1249420 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:05:53] 2025-11-26 18:05:27,479 | INFO     | .. there are 35 such processes running
[2025-11-26 10:05:53] 2025-11-26 18:05:27,479 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:05:53] 2025-11-26 18:05:27,479 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:05:53] 2025-11-26 18:05:27,479 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:05:53] 2025-11-26 18:05:45,882 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:05:53] 2025-11-26 18:05:47,708 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139706820310848)>', '<ExcThread(monitor, started 139706276763392)>']
[2025-11-26 10:05:53] 2025-11-26 18:05:48,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:05:53] 2025-11-26 18:05:48,608 | INFO     | [monitor] control thread has ended
[2025-11-26 10:05:53] 2025-11-26 18:05:52,735 | INFO     | all workflow threads have been joined
[2025-11-26 10:05:53] 2025-11-26 18:05:52,735 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:05:53] 2025-11-26 18:05:52,735 | INFO     | traces error code: 0
[2025-11-26 10:05:53] 2025-11-26 18:05:52,736 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:05:53] 2025-11-26 18:05:53,160 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:05:53] 2025-11-26 18:05:53,163 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:05:53] 2025-11-26 18:05:53,165 [wrapper] pilotpid: 1249420
[2025-11-26 10:05:53] 2025-11-26 18:05:53,167 [wrapper] Pilot exit status: 0
[2025-11-26 10:05:53] 2025-11-26 18:05:53,177 [wrapper] pandaids: 6898178285
[2025-11-26 10:05:53] 2025-11-26 18:05:53,298 [wrapper] cleanup supervisor_pilot 1249426 1249421
[2025-11-26 10:05:53] 2025-11-26 18:05:53,305 [wrapper] Test setup, not cleaning
[2025-11-26 10:05:53] 2025-11-26 18:05:53,316 [wrapper] apfmon messages muted
[2025-11-26 10:05:53] 2025-11-26 18:05:53,320 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:05:53] 2025-11-26 18:05:53,322 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:05:53]  *** Error codes and diagnostics ***
[2025-11-26 10:05:53]     "exeErrorCode": 65,
[2025-11-26 10:05:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 10:05:53]     "pilotErrorCode": 1305,
[2025-11-26 10:05:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 10:05:53]  *** Listing of results directory ***
[2025-11-26 10:05:53] total 404888
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc    576529 Nov 25 19:33 pilot3.tar.gz
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc      5112 Nov 25 20:06 queuedata.json
[2025-11-26 10:05:53] -rwx------. 1 boinc boinc     36292 Nov 25 20:06 runpilot2-wrapper.sh
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc       100 Nov 26 09:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:05:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 09:58 run_atlas
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc       105 Nov 26 09:58 job.xml
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc      6595 Nov 26 09:58 init_data.xml
[2025-11-26 10:05:53] -rw-r--r--. 2 boinc boinc 410363405 Nov 26 09:58 EVNT.47483658._002472.pool.root.1
[2025-11-26 10:05:53] -rw-r--r--. 2 boinc boinc     15847 Nov 26 09:58 start_atlas.sh
[2025-11-26 10:05:53] drwxrwx--x. 2 boinc boinc      4096 Nov 26 09:58 shared
[2025-11-26 10:05:53] -rw-r--r--. 2 boinc boinc    590105 Nov 26 09:58 input.tar.gz
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc         0 Nov 26 09:58 boinc_lockfile
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc      2785 Nov 26 09:58 pandaJob.out
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc    991530 Nov 26 09:58 agis_schedconf.cvmfs.json
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc   1516240 Nov 26 09:58 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:05:53] drwx------. 5 boinc boinc      4096 Nov 26 09:58 pilot3
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc       525 Nov 26 10:02 boinc_task_state.xml
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc      1020 Nov 26 10:02 memory_monitor_summary.json
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc     49957 Nov 26 10:02 log.47556161._004549.job.log.tgz.1
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc        95 Nov 26 10:04 pilot_heartbeat.json
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc     10340 Nov 26 10:04 heartbeat.json
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc      8192 Nov 26 10:05 boinc_mmap_file
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc        23 Nov 26 10:05 wrapper_checkpoint.txt
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc      4823 Nov 26 10:05 pilotlog.txt
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc    112048 Nov 26 10:05 log.47556161._004549.job.log.1
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc       186 Nov 26 10:05 output.list
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc       620 Nov 26 10:05 runtime_log
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc    184320 Nov 26 10:05 result.tar.gz
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc      8636 Nov 26 10:05 runtime_log.err
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc       645 Nov 26 10:05 IYfLDmuyLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmavMKDmHcpqwm.diag
[2025-11-26 10:05:53] -rw-r--r--. 1 boinc boinc     22546 Nov 26 10:05 stderr.txt
[2025-11-26 10:05:53] No HITS result produced
[2025-11-26 10:05:53]  *** Contents of shared directory: ***
[2025-11-26 10:05:53] total 401528
[2025-11-26 10:05:53] -rw-r--r--. 2 boinc boinc 410363405 Nov 26 09:58 ATLAS.root_0
[2025-11-26 10:05:53] -rw-r--r--. 2 boinc boinc     15847 Nov 26 09:58 start_atlas.sh
[2025-11-26 10:05:53] -rw-r--r--. 2 boinc boinc    590105 Nov 26 09:58 input.tar.gz
[2025-11-26 10:05:53] -rw-------. 1 boinc boinc    184320 Nov 26 10:05 result.tar.gz
10:05:55 (1242523): run_atlas exited; CPU time 49.120882
10:05:55 (1242523): called boinc_finish(0)

</stderr_txt>
]]>

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