Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:50:02 (1488968): wrapper (7.7.26015): starting
12:50:02 (1488968): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:50:02] Arguments: --nthreads 8
[2025-11-26 12:50:02] Threads: 8
[2025-11-26 12:50:02] Checking for CVMFS
[2025-11-26 12:50:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:50:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:50:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:50:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:50:04] 2.13.3.0 13172 30373 386756 153330 2 562 23868315 32935937 39301 16776704 0 158702701 99.540 174365469 34911 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 12:50:04] CVMFS is ok
[2025-11-26 12:50:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:50:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:50:04] Further information can be found at the LHC@home message board.
[2025-11-26 12:50:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:50:04] Checking for apptainer binary...
[2025-11-26 12:50:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:50:04] Running /usr/bin/apptainer --version
[2025-11-26 12:50:04] apptainer version 1.4.4-1.el9
[2025-11-26 12:50:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:50:04] c6-6-8-3.aglt2.org
[2025-11-26 12:50:04] apptainer works
[2025-11-26 12:50:05] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:50:05] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:50:05] Starting ATLAS job with PandaID=6897394497
[2025-11-26 12:50:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:20:08 (1488968): BOINC client no longer exists - exiting
13:20:08 (1488968): timer handler: client dead, exiting
13:20:45 (1728681): wrapper (7.7.26015): starting
13:20:45 (1728681): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:20:45] Arguments: --nthreads 8
[2025-11-26 13:20:45] Threads: 8
[2025-11-26 13:20:45] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:20:45] Checking for CVMFS
[2025-11-26 13:20:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:20:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:20:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:20:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:20:45] 2.13.3.0 13172 30403 374404 153331 3 439 24192179 32935937 35383 16776704 0 159168469 99.541 174462204 34908 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:20:45] CVMFS is ok
[2025-11-26 13:20:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:20:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:20:45] Further information can be found at the LHC@home message board.
[2025-11-26 13:20:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:20:45] Checking for apptainer binary...
[2025-11-26 13:20:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:20:45] Running /usr/bin/apptainer --version
[2025-11-26 13:20:45] apptainer version 1.4.4-1.el9
[2025-11-26 13:20:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:20:45] c6-6-8-3.aglt2.org
[2025-11-26 13:20:45] apptainer works
[2025-11-26 13:20:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:20:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:20:46] Starting ATLAS job with PandaID=6897394497
[2025-11-26 13:20:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:44:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:44:57] 2025-11-27 20:43:50,583 | INFO     | time since job start (94972s) is within the limit (172800.0s)
[2025-11-27 15:44:57] 2025-11-27 20:43:52,317 | INFO     | monitor loop #5182: job 0:6897394497 is in state 'finished'
[2025-11-27 15:44:57] 2025-11-27 20:43:52,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:44:57] 2025-11-27 20:43:52,596 | INFO     | time since job start (94974s) is within the limit (172800.0s)
[2025-11-27 15:44:57] 2025-11-27 20:43:54,603 | INFO     | time since job start (94976s) is within the limit (172800.0s)
[2025-11-27 15:44:57] 2025-11-27 20:43:54,826 | INFO     | monitor loop #5183: job 0:6897394497 is in state 'finished'
[2025-11-27 15:44:57] 2025-11-27 20:43:54,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:44:57] 2025-11-27 20:43:56,612 | INFO     | time since job start (94978s) is within the limit (172800.0s)
[2025-11-27 15:44:57] 2025-11-27 20:43:57,331 | INFO     | monitor loop #5184: job 0:6897394497 is in state 'finished'
[2025-11-27 15:44:57] 2025-11-27 20:43:57,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:44:57] 2025-11-27 20:43:58,618 | INFO     | time since job start (94980s) is within the limit (172800.0s)
[2025-11-27 15:44:57] 2025-11-27 20:43:59,836 | INFO     | monitor loop #5185: job 0:6897394497 is in state 'finished'
[2025-11-27 15:44:57] 2025-11-27 20:43:59,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:44:57] 2025-11-27 20:44:00,635 | INFO     | time since job start (94982s) is within the limit (172800.0s)
[2025-11-27 15:44:57] 2025-11-27 20:44:02,341 | INFO     | monitor loop #5186: job 0:6897394497 is in state 'finished'
[2025-11-27 15:44:57] 2025-11-27 20:44:02,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:44:57] 2025-11-27 20:44:02,642 | INFO     | time since job start (94984s) is within the limit (172800.0s)
[2025-11-27 15:44:57] 2025-11-27 20:44:03,497 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 15:44:57] 2025-11-27 20:44:03,510 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2624.3222187499996
[2025-11-27 15:44:57] 2025-11-27 20:44:03,530 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897394497/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:44:57] 2025-11-27 20:44:03,531 | INFO     | extracted standard info from prmon json
[2025-11-27 15:44:57] 2025-11-27 20:44:03,531 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:44:57] 2025-11-27 20:44:03,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:44:57] 2025-11-27 20:44:03,554 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:44:57] 2025-11-27 20:44:03,556 | INFO     | sum of square deviations: 1170409566549.6333
[2025-11-27 15:44:57] 2025-11-27 20:44:03,628 | INFO     | sum of deviations: 4810810377603.31
[2025-11-27 15:44:57] 2025-11-27 20:44:03,628 | INFO     | mean x: 1764228749.6711626
[2025-11-27 15:44:57] 2025-11-27 20:44:03,628 | INFO     | mean y: 2928207.574823378
[2025-11-27 15:44:57] 2025-11-27 20:44:03,628 | INFO     | intersect: -7248695685.422653
[2025-11-27 15:44:57] 2025-11-27 20:44:03,630 | INFO     | chi2: 13.846588325451755
[2025-11-27 15:44:57] 2025-11-27 20:44:03,632 | INFO     | sum of square deviations: 1159171219618.845
[2025-11-27 15:44:57] 2025-11-27 20:44:03,717 | INFO     | sum of deviations: 5356550993239.265
[2025-11-27 15:44:57] 2025-11-27 20:44:03,717 | INFO     | mean x: 1764228597.179768
[2025-11-27 15:44:57] 2025-11-27 20:44:03,717 | INFO     | mean y: 2935611.0528350514
[2025-11-27 15:44:57] 2025-11-27 20:44:03,718 | INFO     | intersect: -8149596374.370147
[2025-11-27 15:44:57] 2025-11-27 20:44:03,719 | INFO     | chi2: 10.41093936493703
[2025-11-27 15:44:57] 2025-11-27 20:44:03,720 | INFO     | current chi2=10.41093936493703 (change=24.812241685553495 %)
[2025-11-27 15:44:57] 2025-11-27 20:44:03,720 | INFO     | right removable region: 1551
[2025-11-27 15:44:57] 2025-11-27 20:44:03,722 | INFO     | sum of square deviations: 1159168682628.8467
[2025-11-27 15:44:57] 2025-11-27 20:44:03,810 | INFO     | sum of deviations: 4364496587128.3433
[2025-11-27 15:44:57] 2025-11-27 20:44:03,811 | INFO     | mean x: 1764228902.179768
[2025-11-27 15:44:57] 2025-11-27 20:44:03,811 | INFO     | mean y: 2934258.418170103
[2025-11-27 15:44:57] 2025-11-27 20:44:03,811 | INFO     | intersect: -6639732281.721812
[2025-11-27 15:44:57] 2025-11-27 20:44:03,813 | INFO     | chi2: 11.616777389752812
[2025-11-27 15:44:57] 2025-11-27 20:44:03,813 | INFO     | current chi2=11.616777389752812 (change=16.103684772661815 %)
[2025-11-27 15:44:57] 2025-11-27 20:44:03,814 | INFO     | left removable region: 10
[2025-11-27 15:44:57] 2025-11-27 20:44:03,816 | INFO     | sum of square deviations: 1134696686654.969
[2025-11-27 15:44:57] 2025-11-27 20:44:03,866 | INFO     | sum of deviations: 4854163560933.771
[2025-11-27 15:44:57] 2025-11-27 20:44:03,866 | INFO     | mean x: 1764228871.6911097
[2025-11-27 15:44:57] 2025-11-27 20:44:03,866 | INFO     | mean y: 2945134.121349773
[2025-11-27 15:44:57] 2025-11-27 20:44:03,867 | INFO     | intersect: -7544318908.180669
[2025-11-27 15:44:57] 2025-11-27 20:44:03,868 | INFO     | chi2: 7.5046096668438
[2025-11-27 15:44:57] 2025-11-27 20:44:03,869 | INFO     | current memory leak: 4.28 B/s (using 1541 data points, chi2=7.50)
[2025-11-27 15:44:57] 2025-11-27 20:44:03,871 | INFO     | could have reported an average CPU frequency of 2652 MHz (55 samples)
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | ..............................
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | . Timing measurements:
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | . get job = 0 s
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | . initial setup = 1 s
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | . payload setup = 7 s
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | . stage-in = 0 s
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | . payload execution = 94932 s
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | . stage-out = 8 s
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | . log creation = 2 s
[2025-11-27 15:44:57] 2025-11-27 20:44:03,872 | INFO     | ..............................
[2025-11-27 15:44:57] 2025-11-27 20:44:04,174 | INFO     | 
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | job summary report
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | --------------------------------------------------
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | PanDA job id: 6897394497
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | task id: 47556173
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | errors: (none)
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | pilot state: finished 
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | transexitcode: 0
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | exeerrorcode: 0
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | exeerrordiag: 
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | exitcode: 0
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | exitmsg: OK
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | cpuconsumptiontime: 275542 s
[2025-11-27 15:44:57] 2025-11-27 20:44:04,175 | INFO     | nevents: 1000
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | neventsw: 0
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | pid: 1788143
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | pgrp: 1788143
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | corecount: 8
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | event service: False
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | sizes: {0: 2284036, 1: 2284291, 6: 2284553, 11: 2284581, 94943: 2352634, 94952: 2361812, 94970: 2362002}
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | --------------------------------------------------
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | 
[2025-11-27 15:44:57] 2025-11-27 20:44:04,176 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,208 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:44:57] 2025-11-27 20:44:04,209 | INFO     | job 6897394497 has completed (purged errors)
[2025-11-27 15:44:57] 2025-11-27 20:44:04,210 | INFO     | overall cleanup function is called
[2025-11-27 15:44:57] 2025-11-27 20:44:05,234 | INFO     | --- collectZombieJob: --- 10, [1788143]
[2025-11-27 15:44:57] 2025-11-27 20:44:05,234 | INFO     | zombie collector waiting for pid 1788143
[2025-11-27 15:44:57] 2025-11-27 20:44:05,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:44:57] 2025-11-27 20:44:05,235 | INFO     | collected zombie processes
[2025-11-27 15:44:57] 2025-11-27 20:44:05,235 | INFO     | will attempt to kill all subprocesses of pid=1788143
[2025-11-27 15:44:57] 2025-11-27 20:44:06,823 | INFO     | process IDs to be killed: [1788143] (in reverse order)
[2025-11-27 15:44:57] 2025-11-27 20:44:07,109 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:44:57] 2025-11-27 20:44:07,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:44:57] 2025-11-27 20:44:07,178 | INFO     | did not find any defunct processes belonging to 1788143
[2025-11-27 15:44:57] 2025-11-27 20:44:07,209 | INFO     | did not find any defunct processes belonging to 1788143
[2025-11-27 15:44:57] 2025-11-27 20:44:07,210 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:44:57] 2025-11-27 20:44:07,210 | INFO     | ready for new job
[2025-11-27 15:44:57] 2025-11-27 20:44:07,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:44:57] 2025-11-27 20:44:07,216 | INFO     | ***************************************
[2025-11-27 15:44:57] 2025-11-27 20:44:07,217 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:44:57] 2025-11-27 20:44:07,217 | INFO     | ***************************************
[2025-11-27 15:44:57] 2025-11-27 20:44:07,217 | INFO     | 
[2025-11-27 15:44:57] 2025-11-27 20:44:07,222 | INFO     | architecture information:
[2025-11-27 15:44:57] 2025-11-27 20:44:07,223 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:44:57] 2025-11-27 20:44:07,241 | INFO     | cat /etc/os-release:
[2025-11-27 15:44:57] NAME="CentOS Linux"
[2025-11-27 15:44:57] VERSION="7 (Core)"
[2025-11-27 15:44:57] ID="centos"
[2025-11-27 15:44:57] ID_LIKE="rhel fedora"
[2025-11-27 15:44:57] VERSION_ID="7"
[2025-11-27 15:44:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:44:57] ANSI_COLOR="0;31"
[2025-11-27 15:44:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:44:57] HOME_URL="https://www.centos.org/"
[2025-11-27 15:44:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:44:57] 
[2025-11-27 15:44:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:44:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:44:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:44:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:44:57] 
[2025-11-27 15:44:57] 2025-11-27 20:44:07,241 | INFO     | ***************************************
[2025-11-27 15:44:57] 2025-11-27 20:44:07,753 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 15:44:57] 2025-11-27 20:44:07,808 | INFO     | sufficient remaining disk space (87017127936 B)
[2025-11-27 15:44:57] 2025-11-27 20:44:07,808 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:44:57] 2025-11-27 20:44:07,808 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:44:57] 2025-11-27 20:44:07,808 | INFO     | update_server=False
[2025-11-27 15:44:57] 2025-11-27 20:44:07,809 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:44:57] 2025-11-27 20:44:07,903 | INFO     | all data control threads have been joined
[2025-11-27 15:44:57] 2025-11-27 20:44:08,200 | INFO     | all payload control threads have been joined
[2025-11-27 15:44:57] 2025-11-27 20:44:08,203 | INFO     | all job control threads have been joined
[2025-11-27 15:44:57] 2025-11-27 20:44:08,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:44:57] 2025-11-27 20:44:08,401 | INFO     | aborting loop
[2025-11-27 15:44:57] 2025-11-27 20:44:08,814 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:08,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:44:57] 2025-11-27 20:44:08,909 | INFO     | [data] control thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:44:57] 2025-11-27 20:44:09,206 | INFO     | [payload] control thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,209 | INFO     | [job] control thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,311 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,312 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,393 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,401 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,406 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,687 | INFO     | [job] validate thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:09,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:44:57] 2025-11-27 20:44:10,018 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:10,037 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:10,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:10,249 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:10,901 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:14,018 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:44:57] 2025-11-27 20:44:36,718 | INFO     | PID=1750918 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:44:57] 2025-11-27 20:44:36,718 | INFO     | .. there are 53 such processes running
[2025-11-27 15:44:57] 2025-11-27 20:44:36,719 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:44:57] 2025-11-27 20:44:36,720 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:44:57] 2025-11-27 20:44:36,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:44:57] 2025-11-27 20:44:51,076 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:44:57] 2025-11-27 20:44:51,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752534017856)>', '<ExcThread(monitor, started 139752045008640)>']
[2025-11-27 15:44:57] 2025-11-27 20:44:52,814 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:44:57] 2025-11-27 20:44:52,814 | INFO     | [monitor] control thread has ended
[2025-11-27 15:44:57] 2025-11-27 20:44:56,879 | INFO     | all workflow threads have been joined
[2025-11-27 15:44:57] 2025-11-27 20:44:56,879 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:44:57] 2025-11-27 20:44:56,880 | INFO     | traces error code: 0
[2025-11-27 15:44:57] 2025-11-27 20:44:56,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:44:57] 2025-11-27 20:44:57,146 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:44:57] 2025-11-27 20:44:57,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:44:57] 2025-11-27 20:44:57,188 [wrapper] pilotpid: 1750918
[2025-11-27 15:44:57] 2025-11-27 20:44:57,195 [wrapper] Pilot exit status: 0
[2025-11-27 15:44:57] 2025-11-27 20:44:57,230 [wrapper] pandaids: 6897394497 6897394497
[2025-11-27 15:44:57] 2025-11-27 20:44:57,356 [wrapper] cleanup supervisor_pilot  915400 1750921
[2025-11-27 15:44:57] 2025-11-27 20:44:57,360 [wrapper] Test setup, not cleaning
[2025-11-27 15:44:57] 2025-11-27 20:44:57,364 [wrapper] apfmon messages muted
[2025-11-27 15:44:57] 2025-11-27 20:44:57,367 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:44:57] 2025-11-27 20:44:57,370 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:44:57]  *** Error codes and diagnostics ***
[2025-11-27 15:44:57]     "exeErrorCode": 0,
[2025-11-27 15:44:57]     "exeErrorDiag": "",
[2025-11-27 15:44:57]     "pilotErrorCode": 0,
[2025-11-27 15:44:57]     "pilotErrorDiag": "",
[2025-11-27 15:44:57]  *** Listing of results directory ***
[2025-11-27 15:44:57] total 1723512
[2025-11-27 15:44:57] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 15:44:57] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas       100 Nov 26 12:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:44:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 12:50 run_atlas
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas       105 Nov 26 12:50 job.xml
[2025-11-27 15:44:57] -rw-r--r--. 3 boincer umatlas 410807023 Nov 26 12:50 EVNT.47483658._003097.pool.root.1
[2025-11-27 15:44:57] -rw-r--r--. 3 boincer umatlas 410807023 Nov 26 12:50 ATLAS.root_0
[2025-11-27 15:44:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 12:50 start_atlas.sh
[2025-11-27 15:44:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 12:50 shared
[2025-11-27 15:44:57] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 12:50 input.tar.gz
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas         0 Nov 26 12:50 boinc_lockfile
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 13:20 pandaJob.out
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas        57 Nov 26 13:20 setup.sh.local
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas    991522 Nov 26 13:20 agis_schedconf.cvmfs.json
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:12 boinc_task_state.xml
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 15:39 init_data.xml
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas 911703241 Nov 27 15:41 HITS.47556173._000792.pool.root.1
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas      1067 Nov 27 15:43 memory_monitor_summary.json
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas   2507596 Nov 27 15:43 log.47556173._000792.job.log.tgz.1
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas      8631 Nov 27 15:44 heartbeat.json
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas        96 Nov 27 15:44 pilot_heartbeat.json
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:44 boinc_mmap_file
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:44 wrapper_checkpoint.txt
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas      4824 Nov 27 15:44 pilotlog.txt
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas  11307278 Nov 27 15:44 log.47556173._000792.job.log.1
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas       353 Nov 27 15:44 output.list
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:44 runtime_log
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas  13834240 Nov 27 15:44 result.tar.gz
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 15:44 runtime_log.err
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas       788 Nov 27 15:44 1RnMDmOXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUcJKDmad08em.diag
[2025-11-27 15:44:57] -rw-r--r--. 1 boincer umatlas     24036 Nov 27 15:44 stderr.txt
[2025-11-27 15:44:57] HITS file was successfully produced:
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas 911703241 Nov 27 15:41 shared/HITS.pool.root.1
[2025-11-27 15:44:57]  *** Contents of shared directory: ***
[2025-11-27 15:44:57] total 1305632
[2025-11-27 15:44:57] -rw-r--r--. 3 boincer umatlas 410807023 Nov 26 12:50 ATLAS.root_0
[2025-11-27 15:44:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 12:50 start_atlas.sh
[2025-11-27 15:44:57] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 12:50 input.tar.gz
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas 911703241 Nov 27 15:41 HITS.pool.root.1
[2025-11-27 15:44:57] -rw-------. 1 boincer umatlas  13834240 Nov 27 15:44 result.tar.gz
15:44:59 (1728681): run_atlas exited; CPU time 279494.333947
15:44:59 (1728681): called boinc_finish(0)

</stderr_txt>
]]>

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