Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:25:40 (32271): wrapper (7.7.26015): starting
12:25:40 (32271): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 12:25:40] Arguments: --nthreads 12
[2025-11-26 12:25:40] Threads: 12
[2025-11-26 12:25:40] Checking for CVMFS
[2025-11-26 12:25:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:25:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:25:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:25:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:25:40] 2.11.2.0 3035 287933 94720 153330 1 80 19043096 20275201 1 130560 3 129227111 99.968 17122648 14293 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 12:25:40] CVMFS is ok
[2025-11-26 12:25:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:25:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:25:40] Further information can be found at the LHC@home message board.
[2025-11-26 12:25:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:25:40] Checking for apptainer binary...
[2025-11-26 12:25:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:25:40] Running /usr/bin/apptainer --version
[2025-11-26 12:25:40] apptainer version 1.3.2-1.el7
[2025-11-26 12:25:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:25:42] c-205-31.aglt2.org
[2025-11-26 12:25:42] apptainer works
[2025-11-26 12:25:42] Set ATHENA_PROC_NUMBER=12
[2025-11-26 12:25:42] Set ATHENA_CORE_NUMBER=12
[2025-11-26 12:25:42] Starting ATLAS job with PandaID=6898175873
[2025-11-26 12:25:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:49:44 (16422): wrapper (7.7.26015): starting
17:49:44 (16422): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 17:49:44] Arguments: --nthreads 12
[2025-11-26 17:49:44] Threads: 12
[2025-11-26 17:49:44] This job has been restarted, cleaning up previous attempt
[2025-11-26 17:49:44] Checking for CVMFS
[2025-11-26 17:49:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:49:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:49:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:49:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:49:45] 2.11.2.0 3035 288257 96828 153337 1 56 19449974 20275201 1 130560 3 129369648 99.968 17131992 14299 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 17:49:45] CVMFS is ok
[2025-11-26 17:49:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:49:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:49:45] Further information can be found at the LHC@home message board.
[2025-11-26 17:49:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:49:45] Checking for apptainer binary...
[2025-11-26 17:49:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:49:45] Running /usr/bin/apptainer --version
[2025-11-26 17:49:45] apptainer version 1.3.2-1.el7
[2025-11-26 17:49:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:49:47] c-205-31.aglt2.org
[2025-11-26 17:49:47] apptainer works
[2025-11-26 17:49:47] Set ATHENA_PROC_NUMBER=12
[2025-11-26 17:49:47] Set ATHENA_CORE_NUMBER=12
[2025-11-26 17:49:47] Starting ATLAS job with PandaID=6898175873
[2025-11-26 17:49:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:56:50]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:56:50] 2025-11-27 05:55:49,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,591 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 00:56:50] 2025-11-27 05:55:49,595 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-27 00:56:50] 2025-11-27 05:55:49,597 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898175873/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,598 | INFO     | extracted standard info from prmon json
[2025-11-27 00:56:50] 2025-11-27 05:55:49,598 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:56:50] 2025-11-27 05:55:49,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:56:50] 2025-11-27 05:55:49,606 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:56:50] 2025-11-27 05:55:49,606 | INFO     | sum of square deviations: 22809590631.169388
[2025-11-27 00:56:50] 2025-11-27 05:55:49,610 | INFO     | sum of deviations: 355375772080.92334
[2025-11-27 00:56:50] 2025-11-27 05:55:49,610 | INFO     | mean x: 1764210181.2434368
[2025-11-27 00:56:50] 2025-11-27 05:55:49,610 | INFO     | mean y: 3411264.6085918853
[2025-11-27 00:56:50] 2025-11-27 05:55:49,611 | INFO     | intersect: -27483165123.81954
[2025-11-27 00:56:50] 2025-11-27 05:55:49,611 | INFO     | chi2: 6.4472931503250575
[2025-11-27 00:56:50] 2025-11-27 05:55:49,612 | INFO     | sum of square deviations: 22002750798.36951
[2025-11-27 00:56:50] 2025-11-27 05:55:49,615 | INFO     | sum of deviations: 520542438563.2531
[2025-11-27 00:56:50] 2025-11-27 05:55:49,616 | INFO     | mean x: 1764210028.7463768
[2025-11-27 00:56:50] 2025-11-27 05:55:49,616 | INFO     | mean y: 3442451.335748792
[2025-11-27 00:56:50] 2025-11-27 05:55:49,616 | INFO     | intersect: -41734347469.43356
[2025-11-27 00:56:50] 2025-11-27 05:55:49,616 | INFO     | chi2: 3.243048333585261
[2025-11-27 00:56:50] 2025-11-27 05:55:49,616 | INFO     | current chi2=3.243048333585261 (change=49.69907125408507 %)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,617 | INFO     | sum of square deviations: 21215167140.56236
[2025-11-27 00:56:50] 2025-11-27 05:55:49,621 | INFO     | sum of deviations: 580896909385.0934
[2025-11-27 00:56:50] 2025-11-27 05:55:49,621 | INFO     | mean x: 1764209876.2493887
[2025-11-27 00:56:50] 2025-11-27 05:55:49,621 | INFO     | mean y: 3454099.371638142
[2025-11-27 00:56:50] 2025-11-27 05:55:49,621 | INFO     | intersect: -48302743906.51231
[2025-11-27 00:56:50] 2025-11-27 05:55:49,621 | INFO     | chi2: 2.6010938036547007
[2025-11-27 00:56:50] 2025-11-27 05:55:49,621 | INFO     | current chi2=2.6010938036547007 (change=19.79478761640489 %)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,622 | INFO     | right removable region: 408
[2025-11-27 00:56:50] 2025-11-27 05:55:49,622 | INFO     | sum of square deviations: 22002688578.36952
[2025-11-27 00:56:50] 2025-11-27 05:55:49,626 | INFO     | sum of deviations: 212627445368.83295
[2025-11-27 00:56:50] 2025-11-27 05:55:49,626 | INFO     | mean x: 1764210333.7463768
[2025-11-27 00:56:50] 2025-11-27 05:55:49,626 | INFO     | mean y: 3438167.388888889
[2025-11-27 00:56:50] 2025-11-27 05:55:49,626 | INFO     | intersect: -17045366346.735905
[2025-11-27 00:56:50] 2025-11-27 05:55:49,627 | INFO     | chi2: 4.013741189107281
[2025-11-27 00:56:50] 2025-11-27 05:55:49,627 | INFO     | current chi2=4.013741189107281 (change=37.745328224994424 %)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,627 | INFO     | sum of square deviations: 21215068076.05862
[2025-11-27 00:56:50] 2025-11-27 05:55:49,631 | INFO     | sum of deviations: 181288158720.37662
[2025-11-27 00:56:50] 2025-11-27 05:55:49,631 | INFO     | mean x: 1764210486.2469437
[2025-11-27 00:56:50] 2025-11-27 05:55:49,631 | INFO     | mean y: 3444228.501222494
[2025-11-27 00:56:50] 2025-11-27 05:55:49,631 | INFO     | intersect: -15072183598.86456
[2025-11-27 00:56:50] 2025-11-27 05:55:49,632 | INFO     | chi2: 3.9636290324489045
[2025-11-27 00:56:50] 2025-11-27 05:55:49,632 | INFO     | current chi2=3.9636290324489045 (change=1.2485148966349422 %)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,632 | INFO     | left removable region: 20
[2025-11-27 00:56:50] 2025-11-27 05:55:49,633 | INFO     | sum of square deviations: 18112218160.75
[2025-11-27 00:56:50] 2025-11-27 05:55:49,636 | INFO     | sum of deviations: 361859413018.9998
[2025-11-27 00:56:50] 2025-11-27 05:55:49,636 | INFO     | mean x: 1764210455.75
[2025-11-27 00:56:50] 2025-11-27 05:55:49,636 | INFO     | mean y: 3497304.4536082475
[2025-11-27 00:56:50] 2025-11-27 05:55:49,636 | INFO     | intersect: -35243215952.518456
[2025-11-27 00:56:50] 2025-11-27 05:55:49,637 | INFO     | chi2: 0.05589843947321617
[2025-11-27 00:56:50] 2025-11-27 05:55:49,637 | INFO     | current memory leak: 19.98 B/s (using 388 data points, chi2=0.06)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,637 | INFO     | could have reported an average CPU frequency of 2336 MHz (18 samples)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,637 | INFO     | ..............................
[2025-11-27 00:56:50] 2025-11-27 05:55:49,637 | INFO     | . Timing measurements:
[2025-11-27 00:56:50] 2025-11-27 05:55:49,638 | INFO     | . get job = 0 s
[2025-11-27 00:56:50] 2025-11-27 05:55:49,638 | INFO     | . initial setup = 2 s
[2025-11-27 00:56:50] 2025-11-27 05:55:49,638 | INFO     | . payload setup = 7 s
[2025-11-27 00:56:50] 2025-11-27 05:55:49,638 | INFO     | . stage-in = 0 s
[2025-11-27 00:56:50] 2025-11-27 05:55:49,638 | INFO     | . payload execution = 25507 s
[2025-11-27 00:56:50] 2025-11-27 05:55:49,638 | INFO     | . stage-out = 3 s
[2025-11-27 00:56:50] 2025-11-27 05:55:49,638 | INFO     | . log creation = 0 s
[2025-11-27 00:56:50] 2025-11-27 05:55:49,638 | INFO     | ..............................
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | 
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | job summary report
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | --------------------------------------------------
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | PanDA job id: 6898175873
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | task id: 47556161
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | errors: (none)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | pilot state: finished 
[2025-11-27 00:56:50] 2025-11-27 05:55:49,721 | INFO     | transexitcode: 0
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | exeerrorcode: 0
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | exeerrordiag: 
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | exitcode: 0
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | exitmsg: OK
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | cpuconsumptiontime: 292396 s
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | nevents: 1000
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | neventsw: 0
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | pid: 28078
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | pgrp: 28078
[2025-11-27 00:56:50] 2025-11-27 05:55:49,722 | INFO     | corecount: 12
[2025-11-27 00:56:50] 2025-11-27 05:55:49,723 | INFO     | event service: False
[2025-11-27 00:56:50] 2025-11-27 05:55:49,723 | INFO     | sizes: {0: 2283986, 1: 2284241, 6: 2284503, 12: 2284531, 25519: 2321684, 25523: 2330678, 25525: 2330862, 25531: 2331108}
[2025-11-27 00:56:50] 2025-11-27 05:55:49,723 | INFO     | --------------------------------------------------
[2025-11-27 00:56:50] 2025-11-27 05:55:49,723 | INFO     | 
[2025-11-27 00:56:50] 2025-11-27 05:55:49,723 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 00:56:50] 2025-11-27 05:55:49,748 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,748 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,748 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,749 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,750 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,750 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,750 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,751 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,751 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,751 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,751 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,751 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:56:50] 2025-11-27 05:55:49,751 | INFO     | job 6898175873 has completed (purged errors)
[2025-11-27 00:56:50] 2025-11-27 05:55:49,752 | INFO     | overall cleanup function is called
[2025-11-27 00:56:50] 2025-11-27 05:55:50,767 | INFO     | --- collectZombieJob: --- 10, [28078]
[2025-11-27 00:56:50] 2025-11-27 05:55:50,767 | INFO     | zombie collector waiting for pid 28078
[2025-11-27 00:56:50] 2025-11-27 05:55:50,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:56:50] 2025-11-27 05:55:50,768 | INFO     | collected zombie processes
[2025-11-27 00:56:50] 2025-11-27 05:55:50,768 | INFO     | will attempt to kill all subprocesses of pid=28078
[2025-11-27 00:56:50] 2025-11-27 05:55:50,860 | INFO     | process IDs to be killed: [28078] (in reverse order)
[2025-11-27 00:56:50] 2025-11-27 05:55:50,913 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:56:50] 2025-11-27 05:55:50,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:56:50] 2025-11-27 05:55:50,916 | INFO     | did not find any defunct processes belonging to 28078
[2025-11-27 00:56:50] 2025-11-27 05:55:50,918 | INFO     | did not find any defunct processes belonging to 28078
[2025-11-27 00:56:50] 2025-11-27 05:55:50,920 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:56:50] 2025-11-27 05:55:50,920 | INFO     | ready for new job
[2025-11-27 00:56:50] 2025-11-27 05:55:50,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:56:50] 2025-11-27 05:55:50,922 | INFO     | ***************************************
[2025-11-27 00:56:50] 2025-11-27 05:55:50,923 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:56:50] 2025-11-27 05:55:50,923 | INFO     | ***************************************
[2025-11-27 00:56:50] 2025-11-27 05:55:50,923 | INFO     | 
[2025-11-27 00:56:50] 2025-11-27 05:55:50,923 | INFO     | architecture information:
[2025-11-27 00:56:50] 2025-11-27 05:55:50,924 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:56:50] 2025-11-27 05:55:50,940 | INFO     | cat /etc/os-release:
[2025-11-27 00:56:50] NAME="CentOS Linux"
[2025-11-27 00:56:50] VERSION="7 (Core)"
[2025-11-27 00:56:50] ID="centos"
[2025-11-27 00:56:50] ID_LIKE="rhel fedora"
[2025-11-27 00:56:50] VERSION_ID="7"
[2025-11-27 00:56:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:56:50] ANSI_COLOR="0;31"
[2025-11-27 00:56:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:56:50] HOME_URL="https://www.centos.org/"
[2025-11-27 00:56:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:56:50] 
[2025-11-27 00:56:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:56:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:56:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:56:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:56:50] 
[2025-11-27 00:56:50] 2025-11-27 05:55:50,940 | INFO     | ***************************************
[2025-11-27 00:56:50] 2025-11-27 05:55:51,441 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 00:56:50] 2025-11-27 05:55:51,459 | INFO     | sufficient remaining disk space (28260171776 B)
[2025-11-27 00:56:50] 2025-11-27 05:55:51,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:56:50] 2025-11-27 05:55:51,459 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:56:50] 2025-11-27 05:55:51,459 | INFO     | update_server=False
[2025-11-27 00:56:50] 2025-11-27 05:55:51,460 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:56:50] 2025-11-27 05:55:51,460 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:56:50] 2025-11-27 05:55:51,694 | INFO     | all job control threads have been joined
[2025-11-27 00:56:50] 2025-11-27 05:55:51,771 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 00:56:50] 2025-11-27 05:55:51,771 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 00:56:50] 2025-11-27 05:55:51,772 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:56:50] 2025-11-27 05:55:51,772 | INFO     | will abort loop
[2025-11-27 00:56:50] 2025-11-27 05:55:51,796 | INFO     | all data control threads have been joined
[2025-11-27 00:56:50] 2025-11-27 05:55:52,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:56:50] 2025-11-27 05:55:52,461 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:52,465 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:52,700 | INFO     | [job] control thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:52,777 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:52,801 | INFO     | [data] control thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:52,818 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:52,836 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:52,902 | INFO     | all payload control threads have been joined
[2025-11-27 00:56:50] 2025-11-27 05:55:53,075 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:53,499 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:53,601 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:53,808 | INFO     | [job] validate thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:53,823 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:53,907 | INFO     | [payload] control thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:54,228 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:55:54,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:56:50] 2025-11-27 05:55:58,595 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:56:02,195 | INFO     | job.realtimelogging is not enabled
[2025-11-27 00:56:50] 2025-11-27 05:56:03,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:56:50] 2025-11-27 05:56:21,166 | INFO     | PID=20481 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 00:56:50] 2025-11-27 05:56:21,167 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:56:50] 2025-11-27 05:56:21,167 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:56:50] 2025-11-27 05:56:21,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:56:50] 2025-11-27 05:56:44,871 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:56:50] 2025-11-27 05:56:45,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858710288192)>', '<ExcThread(monitor, started 139857674360576)>']
[2025-11-27 00:56:50] 2025-11-27 05:56:45,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:56:50] 2025-11-27 05:56:45,273 | INFO     | [monitor] control thread has ended
[2025-11-27 00:56:50] 2025-11-27 05:56:50,181 | INFO     | all workflow threads have been joined
[2025-11-27 00:56:50] 2025-11-27 05:56:50,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:56:50] 2025-11-27 05:56:50,181 | INFO     | traces error code: 0
[2025-11-27 00:56:50] 2025-11-27 05:56:50,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:56:50] 2025-11-27 05:56:50,263 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:56:50] 2025-11-27 05:56:50,267 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:56:50] 2025-11-27 05:56:50,271 [wrapper] pilotpid: 20481
[2025-11-27 00:56:50] 2025-11-27 05:56:50,275 [wrapper] Pilot exit status: 0
[2025-11-27 00:56:50] 2025-11-27 05:56:50,290 [wrapper] pandaids: 6898175873 6898175873
[2025-11-27 00:56:50] 2025-11-27 05:56:50,337 [wrapper] cleanup supervisor_pilot 22299 20482
[2025-11-27 00:56:50] 2025-11-27 05:56:50,341 [wrapper] Test setup, not cleaning
[2025-11-27 00:56:50] 2025-11-27 05:56:50,344 [wrapper] apfmon messages muted
[2025-11-27 00:56:50] 2025-11-27 05:56:50,348 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:56:50] 2025-11-27 05:56:50,352 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:56:50]  *** Error codes and diagnostics ***
[2025-11-27 00:56:50]     "exeErrorCode": 0,
[2025-11-27 00:56:50]     "exeErrorDiag": "",
[2025-11-27 00:56:50]     "pilotErrorCode": 0,
[2025-11-27 00:56:50]     "pilotErrorDiag": "",
[2025-11-27 00:56:50]  *** Listing of results directory ***
[2025-11-27 00:56:50] total 1700788
[2025-11-27 00:56:50] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 22:57 queuedata.json
[2025-11-27 00:56:50] -rwx------ 1 boincer umatlas     36292 Nov 25 23:00 runpilot2-wrapper.sh
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas       100 Nov 26 12:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:56:50] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 12:25 run_atlas
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas       105 Nov 26 12:25 job.xml
[2025-11-27 00:56:50] -rw-r--r-- 3 boincer umatlas 409529520 Nov 26 12:25 EVNT.47483658._002459.pool.root.1
[2025-11-27 00:56:50] -rw-r--r-- 3 boincer umatlas 409529520 Nov 26 12:25 ATLAS.root_0
[2025-11-27 00:56:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 12:25 start_atlas.sh
[2025-11-27 00:56:50] drwxrwx--x 2 boincer umatlas      4096 Nov 26 12:25 shared
[2025-11-27 00:56:50] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 12:25 input.tar.gz
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas         0 Nov 26 12:25 boinc_lockfile
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas      2784 Nov 26 17:49 pandaJob.out
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas        57 Nov 26 17:49 setup.sh.local
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas    991546 Nov 26 17:50 agis_schedconf.cvmfs.json
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas       532 Nov 27 00:45 boinc_task_state.xml
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas      5956 Nov 27 00:46 init_data.xml
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas 907136763 Nov 27 00:55 HITS.47556161._004414.pool.root.1
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas      1061 Nov 27 00:55 memory_monitor_summary.json
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas   1516240 Nov 27 00:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas   2168215 Nov 27 00:55 log.47556161._004414.job.log.tgz.1
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas      8668 Nov 27 00:55 heartbeat.json
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas        96 Nov 27 00:56 pilot_heartbeat.json
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 00:56 boinc_mmap_file
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas        29 Nov 27 00:56 wrapper_checkpoint.txt
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas      5004 Nov 27 00:56 pilotlog.txt
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas   3576195 Nov 27 00:56 log.47556161._004414.job.log.1
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas       353 Nov 27 00:56 output.list
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas       620 Nov 27 00:56 runtime_log
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas   5765120 Nov 27 00:56 result.tar.gz
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas      9430 Nov 27 00:56 runtime_log.err
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas       795 Nov 27 00:56 RgCMDmssLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXtMKDmrwaoHm.diag
[2025-11-27 00:56:50] -rw-r--r-- 1 boincer umatlas     23450 Nov 27 00:56 stderr.txt
[2025-11-27 00:56:50] HITS file was successfully produced:
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas 907136763 Nov 27 00:55 shared/HITS.pool.root.1
[2025-11-27 00:56:50]  *** Contents of shared directory: ***
[2025-11-27 00:56:50] total 1292040
[2025-11-27 00:56:50] -rw-r--r-- 3 boincer umatlas 409529520 Nov 26 12:25 ATLAS.root_0
[2025-11-27 00:56:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 12:25 start_atlas.sh
[2025-11-27 00:56:50] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 12:25 input.tar.gz
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas 907136763 Nov 27 00:55 HITS.pool.root.1
[2025-11-27 00:56:50] -rw------- 1 boincer umatlas   5765120 Nov 27 00:56 result.tar.gz
00:56:52 (16422): run_atlas exited; CPU time 285726.554924
00:56:52 (16422): called boinc_finish(0)

</stderr_txt>
]]>

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