Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:12:35 (510489): wrapper (7.7.26015): starting
09:12:35 (510489): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 09:12:35] Arguments: --nthreads 8
[2025-11-26 09:12:35] Threads: 8
[2025-11-26 09:12:35] Checking for CVMFS
[2025-11-26 09:12:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:12:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:12:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:12:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:12:38] 2.11.3.0 3082052 28669 200684 153329 1 54 36610656 45568000 22840 130560 0 194839766 99.795 119557518 23105 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 09:12:38] CVMFS is ok
[2025-11-26 09:12:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:12:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:12:38] Further information can be found at the LHC@home message board.
[2025-11-26 09:12:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:12:38] Checking for apptainer binary...
[2025-11-26 09:12:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:12:38] Running /usr/bin/apptainer --version
[2025-11-26 09:12:38] apptainer version 1.4.1-1.el9
[2025-11-26 09:12:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:12:38] wns0019.triumf.lcg
[2025-11-26 09:12:38] apptainer works
[2025-11-26 09:12:38] Set ATHENA_PROC_NUMBER=8
[2025-11-26 09:12:38] Set ATHENA_CORE_NUMBER=8
[2025-11-26 09:12:38] Starting ATLAS job with PandaID=6898175859
[2025-11-26 09:12:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:20:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 09:20:33] 2025-11-26 17:20:00,216 | WARNING  | wrong length of table data, x=[1764177239.0, 1764177300.0, 1764177361.0, 1764177422.0], y=[1693.0, 615852.0, 860476.0, 557510.0] (must be same and length>=4)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | ..............................
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . Timing measurements:
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . get job = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . initial setup = 3 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . payload setup = 11 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . stage-in = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . payload execution = 243 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . stage-out = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . log creation = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | ..............................
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898175859/pilotlog.txt
[2025-11-26 09:20:33] 2025-11-26 17:20:00,233 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 09:20:33] - Log from pilotlog.txt -
[2025-11-26 09:20:33] 2025-11-26 17:20:00,214 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898175859/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | INFO     | extracted standard info from prmon json
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 09:20:33] 2025-11-26 17:20:00,216 | WARNING  | wrong length of table data, x=[1764177239.0, 1764177300.0, 1764177361.0, 1764177422.0], y=[1693.0, 615852.0, 860476.0, 557510.0] (must be same and length>=4)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | ..............................
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . Timing measurements:
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . get job = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . initial setup = 3 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . payload setup = 11 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . stage-in = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . payload execution = 243 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . stage-out = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . log creation = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | ..............................
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898175859/pilotlog.txt
[2025-11-26 09:20:33] 2025-11-26 17:20:00,233 | WARNING  | 
[2025-11-26 09:20:33] [begin log extracts]
[2025-11-26 09:20:33] - Log from pilotlog.txt -
[2025-11-26 09:20:33] 2025-11-26 17:20:00,214 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898175859/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | INFO     | extracted standard info from prmon json
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 09:20:33] 2025-11-26 17:20:00,215 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 09:20:33] 2025-11-26 17:20:00,216 | WARNING  | wrong length of table data, x=[1764177239.0, 1764177300.0, 1764177361.0, 1764177422.0], y=[1693.0, 615852.0, 860476.0, 557510.0] (must be same and length>=4)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | ..............................
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . Timing measurements:
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . get job = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . initial setup = 3 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . payload setup = 11 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . stage-in = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . payload execution = 243 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . stage-out = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,217 | INFO     | . log creation = 0 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | ..............................
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:20:33] 2025-11-26 17:20:00,218 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898175859/pilotlog.txt
[2025-11-26 09:20:33] [end log extracts]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,234 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,234 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 09:20:33] 2025-11-26 17:20:00,344 | INFO     | 
[2025-11-26 09:20:33] 2025-11-26 17:20:00,344 | INFO     | job summary report
[2025-11-26 09:20:33] 2025-11-26 17:20:00,344 | INFO     | --------------------------------------------------
[2025-11-26 09:20:33] 2025-11-26 17:20:00,344 | INFO     | PanDA job id: 6898175859
[2025-11-26 09:20:33] 2025-11-26 17:20:00,344 | INFO     | task id: 47556161
[2025-11-26 09:20:33] 2025-11-26 17:20:00,344 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 09:17:49,389 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | pilot state: failed 
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | transexitcode: 65
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | exeerrorcode: 65
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | exitcode: 65
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | cpuconsumptiontime: 53 s
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | nevents: 0
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | neventsw: 0
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | pid: 521324
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | pgrp: 521324
[2025-11-26 09:20:33] 2025-11-26 17:20:00,345 | INFO     | corecount: 8
[2025-11-26 09:20:33] 2025-11-26 17:20:00,346 | INFO     | event service: False
[2025-11-26 09:20:33] 2025-11-26 17:20:00,346 | INFO     | sizes: {0: 2284261, 11: 2284261, 13: 2284551, 22: 2284607, 259: 2310190, 260: 2314664, 382: 2314802}
[2025-11-26 09:20:33] 2025-11-26 17:20:00,346 | INFO     | --------------------------------------------------
[2025-11-26 09:20:33] 2025-11-26 17:20:00,346 | INFO     | 
[2025-11-26 09:20:33] 2025-11-26 17:20:00,346 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 09:20:33] 2025-11-26 17:20:00,361 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,361 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,361 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,363 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,363 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:20:33] 2025-11-26 17:20:00,363 | INFO     | job 6898175859 has completed (purged errors)
[2025-11-26 09:20:33] 2025-11-26 17:20:00,363 | INFO     | overall cleanup function is called
[2025-11-26 09:20:33] 2025-11-26 17:20:01,370 | INFO     | --- collectZombieJob: --- 10, [521324]
[2025-11-26 09:20:33] 2025-11-26 17:20:01,370 | INFO     | zombie collector waiting for pid 521324
[2025-11-26 09:20:33] 2025-11-26 17:20:01,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:20:33] 2025-11-26 17:20:01,370 | INFO     | collected zombie processes
[2025-11-26 09:20:33] 2025-11-26 17:20:01,370 | INFO     | will attempt to kill all subprocesses of pid=521324
[2025-11-26 09:20:33] 2025-11-26 17:20:01,581 | INFO     | process IDs to be killed: [521324] (in reverse order)
[2025-11-26 09:20:33] 2025-11-26 17:20:01,645 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:20:33] 2025-11-26 17:20:01,646 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:20:33] 2025-11-26 17:20:01,653 | INFO     | did not find any defunct processes belonging to 521324
[2025-11-26 09:20:33] 2025-11-26 17:20:01,660 | INFO     | did not find any defunct processes belonging to 521324
[2025-11-26 09:20:33] 2025-11-26 17:20:01,661 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:20:33] 2025-11-26 17:20:01,661 | INFO     | ready for new job
[2025-11-26 09:20:33] 2025-11-26 17:20:01,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:20:33] 2025-11-26 17:20:01,662 | INFO     | ***************************************
[2025-11-26 09:20:33] 2025-11-26 17:20:01,663 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:20:33] 2025-11-26 17:20:01,663 | INFO     | ***************************************
[2025-11-26 09:20:33] 2025-11-26 17:20:01,663 | INFO     | 
[2025-11-26 09:20:33] 2025-11-26 17:20:01,664 | INFO     | architecture information:
[2025-11-26 09:20:33] 2025-11-26 17:20:01,665 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:20:33] 2025-11-26 17:20:01,677 | INFO     | cat /etc/os-release:
[2025-11-26 09:20:33] NAME="CentOS Linux"
[2025-11-26 09:20:33] VERSION="7 (Core)"
[2025-11-26 09:20:33] ID="centos"
[2025-11-26 09:20:33] ID_LIKE="rhel fedora"
[2025-11-26 09:20:33] VERSION_ID="7"
[2025-11-26 09:20:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:20:33] ANSI_COLOR="0;31"
[2025-11-26 09:20:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:20:33] HOME_URL="https://www.centos.org/"
[2025-11-26 09:20:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:20:33] 
[2025-11-26 09:20:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:20:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:20:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:20:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:20:33] 
[2025-11-26 09:20:33] 2025-11-26 17:20:01,677 | INFO     | ***************************************
[2025-11-26 09:20:33] 2025-11-26 17:20:02,182 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 09:20:33] 2025-11-26 17:20:02,193 | INFO     | sufficient remaining disk space (1073806835712 B)
[2025-11-26 09:20:33] 2025-11-26 17:20:02,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:20:33] 2025-11-26 17:20:02,194 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:20:33] 2025-11-26 17:20:02,194 | INFO     | update_server=False
[2025-11-26 09:20:33] 2025-11-26 17:20:02,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:20:33] 2025-11-26 17:20:02,194 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:20:33] 2025-11-26 17:20:02,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:20:33] 2025-11-26 17:20:02,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:20:33] 2025-11-26 17:20:02,581 | INFO     | all payload control threads have been joined
[2025-11-26 09:20:33] 2025-11-26 17:20:02,800 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:20:33] 2025-11-26 17:20:02,800 | INFO     | aborting loop
[2025-11-26 09:20:33] 2025-11-26 17:20:02,916 | INFO     | all data control threads have been joined
[2025-11-26 09:20:33] 2025-11-26 17:20:03,187 | INFO     | all job control threads have been joined
[2025-11-26 09:20:33] 2025-11-26 17:20:03,200 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,211 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,212 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,369 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,587 | INFO     | [payload] control thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,619 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,762 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,806 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,924 | INFO     | [data] control thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:03,984 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:04,033 | INFO     | [job] validate thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:04,200 | INFO     | [job] control thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:04,202 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:04,478 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:04,669 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:06,210 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:20:33] 2025-11-26 17:20:06,783 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:20:33] 2025-11-26 17:20:06,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140088430425920)>', '<ExcThread(monitor, started 140088033912576)>']
[2025-11-26 09:20:33] 2025-11-26 17:20:12,014 | INFO     | all workflow threads have been joined
[2025-11-26 09:20:33] 2025-11-26 17:20:12,014 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:20:33] 2025-11-26 17:20:12,014 | INFO     | traces error code: 0
[2025-11-26 09:20:33] 2025-11-26 17:20:12,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:20:33] 2025-11-26 17:20:32,601 | INFO     | PID=514593 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 09:20:33] 2025-11-26 17:20:32,602 | INFO     | .. there are 26 such processes running
[2025-11-26 09:20:33] 2025-11-26 17:20:32,603 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:20:33] 2025-11-26 17:20:32,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:20:33] 2025-11-26 17:20:32,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:20:33] 2025-11-26 17:20:32,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:20:33] 2025-11-26 17:20:32,603 | INFO     | [monitor] control thread has ended
[2025-11-26 09:20:33] 2025-11-26 17:20:33,056 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:20:33] 2025-11-26 17:20:33,086 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:20:33] 2025-11-26 17:20:33,129 [wrapper] pilotpid: 514593
[2025-11-26 09:20:33] 2025-11-26 17:20:33,158 [wrapper] Pilot exit status: 0
[2025-11-26 09:20:33] 2025-11-26 17:20:33,168 [wrapper] pandaids: 6898175859
[2025-11-26 09:20:33] 2025-11-26 17:20:33,206 [wrapper] cleanup supervisor_pilot  514599 514594
[2025-11-26 09:20:33] 2025-11-26 17:20:33,213 [wrapper] Test setup, not cleaning
[2025-11-26 09:20:33] 2025-11-26 17:20:33,215 [wrapper] apfmon messages muted
[2025-11-26 09:20:33] 2025-11-26 17:20:33,217 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:20:33] 2025-11-26 17:20:33,219 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:20:33]  *** Error codes and diagnostics ***
[2025-11-26 09:20:33]     "exeErrorCode": 65,
[2025-11-26 09:20:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 09:20:33]     "pilotErrorCode": 1305,
[2025-11-26 09:20:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 09:20:33]  *** Listing of results directory ***
[2025-11-26 09:20:33] total 405068
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc    576529 Nov 25 19:33 pilot3.tar.gz
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc      5112 Nov 25 19:46 queuedata.json
[2025-11-26 09:20:33] -rwx------. 1 boinc boinc     36292 Nov 25 19:50 runpilot2-wrapper.sh
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc       100 Nov 26 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:20:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 09:12 run_atlas
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc       105 Nov 26 09:12 job.xml
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc      6445 Nov 26 09:12 init_data.xml
[2025-11-26 09:20:33] -rw-r--r--. 2 boinc boinc 410536082 Nov 26 09:12 EVNT.47483658._002457.pool.root.1
[2025-11-26 09:20:33] -rw-r--r--. 2 boinc boinc     15847 Nov 26 09:12 start_atlas.sh
[2025-11-26 09:20:33] drwxrwx--x. 2 boinc boinc      4096 Nov 26 09:12 shared
[2025-11-26 09:20:33] -rw-r--r--. 2 boinc boinc    590103 Nov 26 09:12 input.tar.gz
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc         0 Nov 26 09:12 boinc_lockfile
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc      2785 Nov 26 09:12 pandaJob.out
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc    991545 Nov 26 09:13 agis_schedconf.cvmfs.json
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc   1516240 Nov 26 09:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:20:33] drwx------. 5 boinc boinc      4096 Nov 26 09:13 pilot3
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc       524 Nov 26 09:16 boinc_task_state.xml
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc       994 Nov 26 09:17 memory_monitor_summary.json
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc     51293 Nov 26 09:17 log.47556161._004400.job.log.tgz.1
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc     10334 Nov 26 09:20 heartbeat.json
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc      8192 Nov 26 09:20 boinc_mmap_file
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc        23 Nov 26 09:20 wrapper_checkpoint.txt
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc        95 Nov 26 09:20 pilot_heartbeat.json
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc       822 Nov 26 09:20 pilotlog.txt
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc    117914 Nov 26 09:20 log.47556161._004400.job.log.1
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc       186 Nov 26 09:20 output.list
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc       620 Nov 26 09:20 runtime_log
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc    194560 Nov 26 09:20 result.tar.gz
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc       647 Nov 26 09:20 WmyLDmoiLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmItMKDmfHVLlm.diag
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc      8634 Nov 26 09:20 runtime_log.err
[2025-11-26 09:20:33] -rw-r--r--. 1 boinc boinc     22600 Nov 26 09:20 stderr.txt
[2025-11-26 09:20:33] No HITS result produced
[2025-11-26 09:20:33]  *** Contents of shared directory: ***
[2025-11-26 09:20:33] total 401708
[2025-11-26 09:20:33] -rw-r--r--. 2 boinc boinc 410536082 Nov 26 09:12 ATLAS.root_0
[2025-11-26 09:20:33] -rw-r--r--. 2 boinc boinc     15847 Nov 26 09:12 start_atlas.sh
[2025-11-26 09:20:33] -rw-r--r--. 2 boinc boinc    590103 Nov 26 09:12 input.tar.gz
[2025-11-26 09:20:33] -rw-------. 1 boinc boinc    194560 Nov 26 09:20 result.tar.gz
09:20:35 (510489): run_atlas exited; CPU time 58.712526
09:20:35 (510489): called boinc_finish(0)

</stderr_txt>
]]>

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