Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:11:27 (1838974): wrapper (7.7.26015): starting
12:11:27 (1838974): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:11:27] Arguments: --nthreads 8
[2025-11-26 12:11:27] Threads: 8
[2025-11-26 12:11:27] Checking for CVMFS
[2025-11-26 12:11:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:11:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:11:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:11:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:11:28] 2.13.3.0 12500 30334 243848 153328 0 934 31815817 32503808 51272 16776704 0 197688920 99.520 234846738 37840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 12:11:28] CVMFS is ok
[2025-11-26 12:11:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:11:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:11:28] Further information can be found at the LHC@home message board.
[2025-11-26 12:11:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:11:28] Checking for apptainer binary...
[2025-11-26 12:11:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:11:28] Running /usr/bin/apptainer --version
[2025-11-26 12:11:28] apptainer version 1.4.4-1.el9
[2025-11-26 12:11:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:11:29] c7-7-36.aglt2.org
[2025-11-26 12:11:29] apptainer works
[2025-11-26 12:11:29] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:11:29] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:11:29] Starting ATLAS job with PandaID=6898175077
[2025-11-26 12:11:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:40:06 (1838974): BOINC client no longer exists - exiting
13:40:06 (1838974): timer handler: client dead, exiting
13:58:43 (2677070): wrapper (7.7.26015): starting
13:58:43 (2677070): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:58:43] Arguments: --nthreads 8
[2025-11-26 13:58:43] Threads: 8
[2025-11-26 13:58:43] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:58:43] Checking for CVMFS
[2025-11-26 13:58:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:58:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:58:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:58:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:58:45] 2.13.3.0 12500 30441 249128 153331 1 851 20315515 32503809 49346 16776704 0 199599708 99.521 236397316 37791 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:58:45] CVMFS is ok
[2025-11-26 13:58:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:58:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:58:45] Further information can be found at the LHC@home message board.
[2025-11-26 13:58:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:58:45] Checking for apptainer binary...
[2025-11-26 13:58:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:58:45] Running /usr/bin/apptainer --version
[2025-11-26 13:58:45] apptainer version 1.4.4-1.el9
[2025-11-26 13:58:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:58:45] c7-7-36.aglt2.org
[2025-11-26 13:58:45] apptainer works
[2025-11-26 13:58:45] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:58:45] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:58:45] Starting ATLAS job with PandaID=6898175077
[2025-11-26 13:58:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:29:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:29:23] 2025-11-27 13:28:48,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,173 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 08:29:23] 2025-11-27 13:28:49,177 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3318.4291354166676
[2025-11-27 08:29:23] 2025-11-27 13:28:49,186 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898175077/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,187 | INFO     | extracted standard info from prmon json
[2025-11-27 08:29:23] 2025-11-27 13:28:49,187 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:29:23] 2025-11-27 13:28:49,187 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:29:23] 2025-11-27 13:28:49,196 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:29:23] 2025-11-27 13:28:49,197 | INFO     | sum of square deviations: 402629313626.4695
[2025-11-27 08:29:23] 2025-11-27 13:28:49,212 | INFO     | sum of deviations: 2259622290280.7744
[2025-11-27 08:29:23] 2025-11-27 13:28:49,212 | INFO     | mean x: 1764216868.4839597
[2025-11-27 08:29:23] 2025-11-27 13:28:49,212 | INFO     | mean y: 2990124.6727772686
[2025-11-27 08:29:23] 2025-11-27 13:28:49,212 | INFO     | intersect: -9898086687.171219
[2025-11-27 08:29:23] 2025-11-27 13:28:49,213 | INFO     | chi2: 8.834341942060199
[2025-11-27 08:29:23] 2025-11-27 13:28:49,214 | INFO     | sum of square deviations: 397118848267.9075
[2025-11-27 08:29:23] 2025-11-27 13:28:49,234 | INFO     | sum of deviations: 2660710281930.654
[2025-11-27 08:29:23] 2025-11-27 13:28:49,234 | INFO     | mean x: 1764216715.9907918
[2025-11-27 08:29:23] 2025-11-27 13:28:49,234 | INFO     | mean y: 3001223.9650092083
[2025-11-27 08:29:23] 2025-11-27 13:28:49,234 | INFO     | intersect: -11817312962.240227
[2025-11-27 08:29:23] 2025-11-27 13:28:49,235 | INFO     | chi2: 5.436289725299276
[2025-11-27 08:29:23] 2025-11-27 13:28:49,235 | INFO     | current chi2=5.436289725299276 (change=38.46412374625026 %)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,236 | INFO     | sum of square deviations: 391658895484.2442
[2025-11-27 08:29:23] 2025-11-27 13:28:49,253 | INFO     | sum of deviations: 2752669115020.71
[2025-11-27 08:29:23] 2025-11-27 13:28:49,254 | INFO     | mean x: 1764216563.4976873
[2025-11-27 08:29:23] 2025-11-27 13:28:49,254 | INFO     | mean y: 3003789.28307123
[2025-11-27 08:29:23] 2025-11-27 13:28:49,254 | INFO     | intersect: -12396317412.253174
[2025-11-27 08:29:23] 2025-11-27 13:28:49,255 | INFO     | chi2: 5.121939982828709
[2025-11-27 08:29:23] 2025-11-27 13:28:49,255 | INFO     | current chi2=5.121939982828709 (change=5.782431738464075 %)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,255 | INFO     | right removable region: 1080
[2025-11-27 08:29:23] 2025-11-27 13:28:49,256 | INFO     | sum of square deviations: 397117860677.9074
[2025-11-27 08:29:23] 2025-11-27 13:28:49,275 | INFO     | sum of deviations: 1811575049827.7039
[2025-11-27 08:29:23] 2025-11-27 13:28:49,276 | INFO     | mean x: 1764217020.9907918
[2025-11-27 08:29:23] 2025-11-27 13:28:49,276 | INFO     | mean y: 3002521.170349908
[2025-11-27 08:29:23] 2025-11-27 13:28:49,276 | INFO     | intersect: -8045015093.178363
[2025-11-27 08:29:23] 2025-11-27 13:28:49,277 | INFO     | chi2: 4.791774885890539
[2025-11-27 08:29:23] 2025-11-27 13:28:49,277 | INFO     | current chi2=4.791774885890539 (change=45.75968513198527 %)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,278 | INFO     | sum of square deviations: 391657316808.1821
[2025-11-27 08:29:23] 2025-11-27 13:28:49,295 | INFO     | sum of deviations: 1630668100604.6213
[2025-11-27 08:29:23] 2025-11-27 13:28:49,296 | INFO     | mean x: 1764217173.492137
[2025-11-27 08:29:23] 2025-11-27 13:28:49,296 | INFO     | mean y: 3007567.9555966696
[2025-11-27 08:29:23] 2025-11-27 13:28:49,296 | INFO     | intersect: -7342323526.066688
[2025-11-27 08:29:23] 2025-11-27 13:28:49,297 | INFO     | chi2: 4.102381592038764
[2025-11-27 08:29:23] 2025-11-27 13:28:49,297 | INFO     | current chi2=4.102381592038764 (change=14.3870133774795 %)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,297 | INFO     | left removable region: 20
[2025-11-27 08:29:23] 2025-11-27 13:28:49,298 | INFO     | sum of square deviations: 369270739807.9055
[2025-11-27 08:29:23] 2025-11-27 13:28:49,316 | INFO     | sum of deviations: 1962416760011.9717
[2025-11-27 08:29:23] 2025-11-27 13:28:49,316 | INFO     | mean x: 1764217143.009434
[2025-11-27 08:29:23] 2025-11-27 13:28:49,316 | INFO     | mean y: 3026709.0028301887
[2025-11-27 08:29:23] 2025-11-27 13:28:49,316 | INFO     | intersect: -9372558509.428364
[2025-11-27 08:29:23] 2025-11-27 13:28:49,317 | INFO     | chi2: 0.16978610810355044
[2025-11-27 08:29:23] 2025-11-27 13:28:49,317 | INFO     | current memory leak: 5.31 B/s (using 1060 data points, chi2=0.17)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,318 | INFO     | could have reported an average CPU frequency of 3183 MHz (40 samples)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,318 | INFO     | ..............................
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | . Timing measurements:
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | . get job = 0 s
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | . initial setup = 1 s
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | . payload setup = 17 s
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | . stage-in = 0 s
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | . payload execution = 66508 s
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | . stage-out = 3 s
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | . log creation = 0 s
[2025-11-27 08:29:23] 2025-11-27 13:28:49,319 | INFO     | ..............................
[2025-11-27 08:29:23] 2025-11-27 13:28:49,381 | INFO     | 
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | job summary report
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | --------------------------------------------------
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | PanDA job id: 6898175077
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | task id: 47556161
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | errors: (none)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | pilot state: finished 
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | transexitcode: 0
[2025-11-27 08:29:23] 2025-11-27 13:28:49,382 | INFO     | exeerrorcode: 0
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | exeerrordiag: 
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | exitcode: 0
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | exitmsg: OK
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | cpuconsumptiontime: 200241 s
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | nevents: 1000
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | neventsw: 0
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | pid: 2704300
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | pgrp: 2704300
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | corecount: 8
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | event service: False
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 19: 2284582, 23: 2284610, 66530: 2340309, 66534: 2349303, 66535: 2349359, 66540: 2349605}
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | --------------------------------------------------
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | 
[2025-11-27 08:29:23] 2025-11-27 13:28:49,383 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 08:29:23] 2025-11-27 13:28:49,400 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,400 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,400 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,400 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,400 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,402 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:29:23] 2025-11-27 13:28:49,402 | INFO     | job 6898175077 has completed (purged errors)
[2025-11-27 08:29:23] 2025-11-27 13:28:49,402 | INFO     | overall cleanup function is called
[2025-11-27 08:29:23] 2025-11-27 13:28:50,416 | INFO     | --- collectZombieJob: --- 10, [2704300]
[2025-11-27 08:29:23] 2025-11-27 13:28:50,416 | INFO     | zombie collector waiting for pid 2704300
[2025-11-27 08:29:23] 2025-11-27 13:28:50,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:29:23] 2025-11-27 13:28:50,417 | INFO     | collected zombie processes
[2025-11-27 08:29:23] 2025-11-27 13:28:50,417 | INFO     | will attempt to kill all subprocesses of pid=2704300
[2025-11-27 08:29:23] 2025-11-27 13:28:51,032 | INFO     | process IDs to be killed: [2704300] (in reverse order)
[2025-11-27 08:29:23] 2025-11-27 13:28:51,227 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:29:23] 2025-11-27 13:28:51,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:29:23] 2025-11-27 13:28:51,253 | INFO     | did not find any defunct processes belonging to 2704300
[2025-11-27 08:29:23] 2025-11-27 13:28:51,277 | INFO     | did not find any defunct processes belonging to 2704300
[2025-11-27 08:29:23] 2025-11-27 13:28:51,278 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:29:23] 2025-11-27 13:28:51,278 | INFO     | ready for new job
[2025-11-27 08:29:23] 2025-11-27 13:28:51,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:29:23] 2025-11-27 13:28:51,282 | INFO     | ***************************************
[2025-11-27 08:29:23] 2025-11-27 13:28:51,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:29:23] 2025-11-27 13:28:51,282 | INFO     | ***************************************
[2025-11-27 08:29:23] 2025-11-27 13:28:51,282 | INFO     | 
[2025-11-27 08:29:23] 2025-11-27 13:28:51,285 | INFO     | architecture information:
[2025-11-27 08:29:23] 2025-11-27 13:28:51,285 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:29:23] 2025-11-27 13:28:51,296 | INFO     | cat /etc/os-release:
[2025-11-27 08:29:23] NAME="CentOS Linux"
[2025-11-27 08:29:23] VERSION="7 (Core)"
[2025-11-27 08:29:23] ID="centos"
[2025-11-27 08:29:23] ID_LIKE="rhel fedora"
[2025-11-27 08:29:23] VERSION_ID="7"
[2025-11-27 08:29:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:29:23] ANSI_COLOR="0;31"
[2025-11-27 08:29:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:29:23] HOME_URL="https://www.centos.org/"
[2025-11-27 08:29:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:29:23] 
[2025-11-27 08:29:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:29:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:29:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:29:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:29:23] 
[2025-11-27 08:29:23] 2025-11-27 13:28:51,296 | INFO     | ***************************************
[2025-11-27 08:29:23] 2025-11-27 13:28:51,799 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 08:29:23] 2025-11-27 13:28:51,814 | INFO     | sufficient remaining disk space (89118474240 B)
[2025-11-27 08:29:23] 2025-11-27 13:28:51,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:29:23] 2025-11-27 13:28:51,815 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:29:23] 2025-11-27 13:28:51,815 | INFO     | update_server=False
[2025-11-27 08:29:23] 2025-11-27 13:28:51,815 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:29:23] 2025-11-27 13:28:52,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:29:23] 2025-11-27 13:28:52,110 | INFO     | aborting loop
[2025-11-27 08:29:23] 2025-11-27 13:28:52,240 | INFO     | all payload control threads have been joined
[2025-11-27 08:29:23] 2025-11-27 13:28:52,521 | INFO     | all job control threads have been joined
[2025-11-27 08:29:23] 2025-11-27 13:28:52,819 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:52,824 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:52,826 | INFO     | all data control threads have been joined
[2025-11-27 08:29:23] 2025-11-27 13:28:53,115 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:53,245 | INFO     | [payload] control thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:53,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:29:23] 2025-11-27 13:28:53,325 | INFO     | [job] validate thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:53,453 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:53,526 | INFO     | [job] control thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:53,653 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:53,744 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:53,831 | INFO     | [data] control thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:53,936 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:54,223 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:54,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:29:23] 2025-11-27 13:28:54,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:29:23] 2025-11-27 13:28:55,280 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:55,399 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:28:58,460 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:29:02,371 | INFO     | job.realtimelogging is not enabled
[2025-11-27 08:29:23] 2025-11-27 13:29:03,376 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:29:23] 2025-11-27 13:29:16,837 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:29:23] 2025-11-27 13:29:17,993 [wrapper] supervise_pilot (15 min periods counter: 75)
[2025-11-27 08:29:23] 2025-11-27 13:29:18,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140469521090368)>', '<ExcThread(monitor, started 140469027718912)>']
[2025-11-27 08:29:23] 2025-11-27 13:29:22,061 | INFO     | PID=2685083 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 08:29:23] 2025-11-27 13:29:22,063 | INFO     | .. there are 72 such processes running
[2025-11-27 08:29:23] 2025-11-27 13:29:22,063 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:29:23] 2025-11-27 13:29:22,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:29:23] 2025-11-27 13:29:22,063 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:29:23] 2025-11-27 13:29:22,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:29:23] 2025-11-27 13:29:22,063 | INFO     | [monitor] control thread has ended
[2025-11-27 08:29:23] 2025-11-27 13:29:23,499 | INFO     | all workflow threads have been joined
[2025-11-27 08:29:23] 2025-11-27 13:29:23,499 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:29:23] 2025-11-27 13:29:23,499 | INFO     | traces error code: 0
[2025-11-27 08:29:23] 2025-11-27 13:29:23,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:29:23] 2025-11-27 13:29:23,634 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:29:23] 2025-11-27 13:29:23,637 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:29:23] 2025-11-27 13:29:23,639 [wrapper] pilotpid: 2685083
[2025-11-27 08:29:23] 2025-11-27 13:29:23,641 [wrapper] Pilot exit status: 0
[2025-11-27 08:29:23] 2025-11-27 13:29:23,651 [wrapper] pandaids: 6898175077 6898175077
[2025-11-27 08:29:23] 2025-11-27 13:29:23,783 [wrapper] cleanup supervisor_pilot 1900210 2685084
[2025-11-27 08:29:23] 2025-11-27 13:29:23,789 [wrapper] Test setup, not cleaning
[2025-11-27 08:29:23] 2025-11-27 13:29:23,792 [wrapper] apfmon messages muted
[2025-11-27 08:29:23] 2025-11-27 13:29:23,794 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:29:23] 2025-11-27 13:29:23,797 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:29:23]  *** Error codes and diagnostics ***
[2025-11-27 08:29:23]     "exeErrorCode": 0,
[2025-11-27 08:29:23]     "exeErrorDiag": "",
[2025-11-27 08:29:23]     "pilotErrorCode": 0,
[2025-11-27 08:29:23]     "pilotErrorDiag": "",
[2025-11-27 08:29:23]  *** Listing of results directory ***
[2025-11-27 08:29:23] total 1720980
[2025-11-27 08:29:23] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 22:33 pilot3.tar.gz
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:46 queuedata.json
[2025-11-27 08:29:23] -rwx------. 1 boincer umatlas     36292 Nov 25 22:50 runpilot2-wrapper.sh
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas       100 Nov 26 12:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:29:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 12:11 run_atlas
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas       105 Nov 26 12:11 job.xml
[2025-11-27 08:29:23] -rw-r--r--. 3 boincer umatlas 408976088 Nov 26 12:11 EVNT.47483658._002454.pool.root.1
[2025-11-27 08:29:23] -rw-r--r--. 3 boincer umatlas 408976088 Nov 26 12:11 ATLAS.root_0
[2025-11-27 08:29:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 12:11 start_atlas.sh
[2025-11-27 08:29:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 12:11 shared
[2025-11-27 08:29:23] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 12:11 input.tar.gz
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas         0 Nov 26 12:11 boinc_lockfile
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 13:58 pandaJob.out
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas        57 Nov 26 13:58 setup.sh.local
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas    991522 Nov 26 13:59 agis_schedconf.cvmfs.json
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:18 boinc_task_state.xml
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas 919982324 Nov 27 08:28 HITS.47556161._004369.pool.root.1
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 08:28 init_data.xml
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas      1070 Nov 27 08:28 memory_monitor_summary.json
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas        97 Nov 27 08:28 pilot_heartbeat.json
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:28 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas   2188173 Nov 27 08:28 log.47556161._004369.job.log.tgz.1
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas      8634 Nov 27 08:28 heartbeat.json
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 08:29 boinc_mmap_file
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas        29 Nov 27 08:29 wrapper_checkpoint.txt
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas      4897 Nov 27 08:29 pilotlog.txt
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas   8019907 Nov 27 08:29 log.47556161._004369.job.log.1
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas       353 Nov 27 08:29 output.list
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:29 runtime_log
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas  10229760 Nov 27 08:29 result.tar.gz
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas      9423 Nov 27 08:29 runtime_log.err
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas       789 Nov 27 08:29 foALDmoiLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqsMKDmyq940m.diag
[2025-11-27 08:29:23] -rw-r--r--. 1 boincer umatlas     23587 Nov 27 08:29 stderr.txt
[2025-11-27 08:29:23] HITS file was successfully produced:
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas 919982324 Nov 27 08:28 shared/HITS.pool.root.1
[2025-11-27 08:29:23]  *** Contents of shared directory: ***
[2025-11-27 08:29:23] total 1308412
[2025-11-27 08:29:23] -rw-r--r--. 3 boincer umatlas 408976088 Nov 26 12:11 ATLAS.root_0
[2025-11-27 08:29:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 12:11 start_atlas.sh
[2025-11-27 08:29:23] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 12:11 input.tar.gz
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas 919982324 Nov 27 08:28 HITS.pool.root.1
[2025-11-27 08:29:23] -rw-------. 1 boincer umatlas  10229760 Nov 27 08:29 result.tar.gz
08:29:25 (2677070): run_atlas exited; CPU time 202341.528251
08:29:25 (2677070): called boinc_finish(0)

</stderr_txt>
]]>

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