Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:12:01 (299956): wrapper (7.7.26015): starting
09:12:01 (299956): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 09:12:01] Arguments: --nthreads 12
[2025-11-26 09:12:01] Threads: 12
[2025-11-26 09:12:01] Checking for CVMFS
[2025-11-26 09:12:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:12:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:12:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:12:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:12:03] 2.11.5.0 1829866 28360 201436 153329 0 144 41170805 45568001 23079 130560 0 256436010 99.760 186631793 28785 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 09:12:03] CVMFS is ok
[2025-11-26 09:12:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:12:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:12:03] Further information can be found at the LHC@home message board.
[2025-11-26 09:12:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:12:03] Checking for apptainer binary...
[2025-11-26 09:12:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:12:03] Running /usr/bin/apptainer --version
[2025-11-26 09:12:03] apptainer version 1.4.1-1.el9
[2025-11-26 09:12:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:12:04] wns0093.triumf.lcg
[2025-11-26 09:12:04] apptainer works
[2025-11-26 09:12:04] Set ATHENA_PROC_NUMBER=12
[2025-11-26 09:12:04] Set ATHENA_CORE_NUMBER=12
[2025-11-26 09:12:04] Starting ATLAS job with PandaID=6898120861
[2025-11-26 09:12:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:22:01]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | could have reported an average CPU frequency of 2623 MHz (4 samples)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | ..............................
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | . Timing measurements:
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . get job = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . initial setup = 5 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . payload setup = 24 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . stage-in = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . payload execution = 274 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . stage-out = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . log creation = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | ..............................
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898120861/pilotlog.txt
[2025-11-26 09:22:01] 2025-11-26 17:21:02,030 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 09:22:01] - Log from pilotlog.txt -
[2025-11-26 09:22:01] 2025-11-26 17:21:02,013 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898120861/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,014 | INFO     | extracted standard info from prmon json
[2025-11-26 09:22:01] 2025-11-26 17:21:02,014 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:22:01] 2025-11-26 17:21:02,014 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:22:01] 2025-11-26 17:21:02,015 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 09:22:01] 2025-11-26 17:21:02,015 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 09:22:01] 2025-11-26 17:21:02,015 | WARNING  | wrong length of table data, x=[1764177290.0, 1764177351.0, 1764177412.0, 1764177473.0], y=[1754.0, 387742.0, 857716.0, 349740.0] (must be same and length>=4)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | could have reported an average CPU frequency of 2623 MHz (4 samples)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | ..............................
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | . Timing measurements:
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . get job = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . initial setup = 5 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . payload setup = 24 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . stage-in = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . payload execution = 274 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . stage-out = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . log creation = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | ..............................
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898120861/pilotlog.txt
[2025-11-26 09:22:01] 2025-11-26 17:21:02,030 | WARNING  | 
[2025-11-26 09:22:01] [begin log extracts]
[2025-11-26 09:22:01] - Log from pilotlog.txt -
[2025-11-26 09:22:01] 2025-11-26 17:21:02,013 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898120861/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,014 | INFO     | extracted standard info from prmon json
[2025-11-26 09:22:01] 2025-11-26 17:21:02,014 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:22:01] 2025-11-26 17:21:02,014 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:22:01] 2025-11-26 17:21:02,015 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 09:22:01] 2025-11-26 17:21:02,015 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 09:22:01] 2025-11-26 17:21:02,015 | WARNING  | wrong length of table data, x=[1764177290.0, 1764177351.0, 1764177412.0, 1764177473.0], y=[1754.0, 387742.0, 857716.0, 349740.0] (must be same and length>=4)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | could have reported an average CPU frequency of 2623 MHz (4 samples)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | ..............................
[2025-11-26 09:22:01] 2025-11-26 17:21:02,016 | INFO     | . Timing measurements:
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . get job = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . initial setup = 5 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . payload setup = 24 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . stage-in = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . payload execution = 274 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . stage-out = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | . log creation = 0 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | ..............................
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:22:01] 2025-11-26 17:21:02,017 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898120861/pilotlog.txt
[2025-11-26 09:22:01] [end log extracts]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,030 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,031 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 09:22:01] 2025-11-26 17:21:02,090 | INFO     | 
[2025-11-26 09:22:01] 2025-11-26 17:21:02,090 | INFO     | job summary report
[2025-11-26 09:22:01] 2025-11-26 17:21:02,090 | INFO     | --------------------------------------------------
[2025-11-26 09:22:01] 2025-11-26 17:21:02,090 | INFO     | PanDA job id: 6898120861
[2025-11-26 09:22:01] 2025-11-26 17:21:02,090 | INFO     | task id: 47556161
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 09:18:46,613 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | pilot state: failed 
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | transexitcode: 65
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | exeerrorcode: 65
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | exitcode: 65
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | cpuconsumptiontime: 50 s
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | nevents: 0
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | neventsw: 0
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | pid: 310619
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | pgrp: 310619
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | corecount: 12
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | event service: False
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | sizes: {0: 2284090, 1: 2284118, 2: 2284317, 13: 2284317, 24: 2284373, 27: 2284663, 34: 2284819, 300: 2314617, 301: 2314617, 430: 2314811}
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | --------------------------------------------------
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | 
[2025-11-26 09:22:01] 2025-11-26 17:21:02,091 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 09:22:01] 2025-11-26 17:21:02,110 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,112 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:22:01] 2025-11-26 17:21:02,112 | INFO     | job 6898120861 has completed (purged errors)
[2025-11-26 09:22:01] 2025-11-26 17:21:02,112 | INFO     | overall cleanup function is called
[2025-11-26 09:22:01] 2025-11-26 17:21:03,123 | INFO     | --- collectZombieJob: --- 10, [310619]
[2025-11-26 09:22:01] 2025-11-26 17:21:03,123 | INFO     | zombie collector waiting for pid 310619
[2025-11-26 09:22:01] 2025-11-26 17:21:03,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:22:01] 2025-11-26 17:21:03,124 | INFO     | collected zombie processes
[2025-11-26 09:22:01] 2025-11-26 17:21:03,124 | INFO     | will attempt to kill all subprocesses of pid=310619
[2025-11-26 09:22:01] 2025-11-26 17:21:03,655 | INFO     | process IDs to be killed: [310619] (in reverse order)
[2025-11-26 09:22:01] 2025-11-26 17:21:03,803 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:22:01] 2025-11-26 17:21:03,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:22:01] 2025-11-26 17:21:03,844 | INFO     | did not find any defunct processes belonging to 310619
[2025-11-26 09:22:01] 2025-11-26 17:21:03,880 | INFO     | did not find any defunct processes belonging to 310619
[2025-11-26 09:22:01] 2025-11-26 17:21:03,900 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:22:01] 2025-11-26 17:21:03,900 | INFO     | ready for new job
[2025-11-26 09:22:01] 2025-11-26 17:21:03,901 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:22:01] 2025-11-26 17:21:03,902 | INFO     | ***************************************
[2025-11-26 09:22:01] 2025-11-26 17:21:03,902 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:22:01] 2025-11-26 17:21:03,903 | INFO     | ***************************************
[2025-11-26 09:22:01] 2025-11-26 17:21:03,903 | INFO     | 
[2025-11-26 09:22:01] 2025-11-26 17:21:03,913 | INFO     | architecture information:
[2025-11-26 09:22:01] 2025-11-26 17:21:03,921 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:22:01] 2025-11-26 17:21:03,956 | INFO     | cat /etc/os-release:
[2025-11-26 09:22:01] NAME="CentOS Linux"
[2025-11-26 09:22:01] VERSION="7 (Core)"
[2025-11-26 09:22:01] ID="centos"
[2025-11-26 09:22:01] ID_LIKE="rhel fedora"
[2025-11-26 09:22:01] VERSION_ID="7"
[2025-11-26 09:22:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:22:01] ANSI_COLOR="0;31"
[2025-11-26 09:22:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:22:01] HOME_URL="https://www.centos.org/"
[2025-11-26 09:22:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:22:01] 
[2025-11-26 09:22:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:22:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:22:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:22:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:22:01] 
[2025-11-26 09:22:01] 2025-11-26 17:21:03,957 | INFO     | ***************************************
[2025-11-26 09:22:01] 2025-11-26 17:21:04,460 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 09:22:01] 2025-11-26 17:21:04,474 | INFO     | sufficient remaining disk space (1860434919424 B)
[2025-11-26 09:22:01] 2025-11-26 17:21:04,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:22:01] 2025-11-26 17:21:04,475 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:22:01] 2025-11-26 17:21:04,475 | INFO     | update_server=False
[2025-11-26 09:22:01] 2025-11-26 17:21:04,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:22:01] 2025-11-26 17:21:04,515 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 09:22:01] 2025-11-26 17:21:04,515 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 09:22:01] 2025-11-26 17:21:04,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:22:01] 2025-11-26 17:21:04,517 | INFO     | will abort loop
[2025-11-26 09:22:01] 2025-11-26 17:21:04,889 | INFO     | all payload control threads have been joined
[2025-11-26 09:22:01] 2025-11-26 17:21:05,025 | INFO     | all job control threads have been joined
[2025-11-26 09:22:01] 2025-11-26 17:21:05,038 | INFO     | all data control threads have been joined
[2025-11-26 09:22:01] 2025-11-26 17:21:05,485 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:05,523 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:05,554 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:22:01] 2025-11-26 17:21:05,587 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:05,606 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:05,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:22:01] 2025-11-26 17:21:05,895 | INFO     | [payload] control thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:05,987 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:06,031 | INFO     | [job] control thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:06,043 | INFO     | [data] control thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:06,201 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:06,422 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:06,443 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:06,540 | INFO     | [job] validate thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:06,710 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:07,105 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:22:01] 2025-11-26 17:21:07,804 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:08,110 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:09,562 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:22:01] 2025-11-26 17:21:34,491 | INFO     | PID=303735 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 09:22:01] 2025-11-26 17:21:34,491 | INFO     | .. there are 28 such processes running
[2025-11-26 09:22:01] 2025-11-26 17:21:34,492 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:22:01] 2025-11-26 17:21:34,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:22:01] 2025-11-26 17:21:34,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:22:01] 2025-11-26 17:21:54,195 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:22:01] 2025-11-26 17:21:55,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140372307830592)>', '<ExcThread(monitor, started 140371912800000)>']
[2025-11-26 09:22:01] 2025-11-26 17:21:55,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:22:01] 2025-11-26 17:21:55,618 | INFO     | [monitor] control thread has ended
[2025-11-26 09:22:01] 2025-11-26 17:22:00,229 | INFO     | all workflow threads have been joined
[2025-11-26 09:22:01] 2025-11-26 17:22:00,229 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:22:01] 2025-11-26 17:22:00,230 | INFO     | traces error code: 0
[2025-11-26 09:22:01] 2025-11-26 17:22:00,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:22:01] 2025-11-26 17:22:00,739 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:22:01] 2025-11-26 17:22:00,758 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:22:01] 2025-11-26 17:22:00,765 [wrapper] pilotpid: 303735
[2025-11-26 09:22:01] 2025-11-26 17:22:00,767 [wrapper] Pilot exit status: 0
[2025-11-26 09:22:01] 2025-11-26 17:22:00,807 [wrapper] pandaids: 6898120861
[2025-11-26 09:22:01] 2025-11-26 17:22:00,978 [wrapper] cleanup supervisor_pilot  303741 303736
[2025-11-26 09:22:01] 2025-11-26 17:22:00,980 [wrapper] Test setup, not cleaning
[2025-11-26 09:22:01] 2025-11-26 17:22:00,982 [wrapper] apfmon messages muted
[2025-11-26 09:22:01] 2025-11-26 17:22:00,983 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:22:01] 2025-11-26 17:22:00,985 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:22:01]  *** Error codes and diagnostics ***
[2025-11-26 09:22:01]     "exeErrorCode": 65,
[2025-11-26 09:22:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 09:22:01]     "pilotErrorCode": 1305,
[2025-11-26 09:22:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 09:22:01]  *** Listing of results directory ***
[2025-11-26 09:22:01] total 403164
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc    576529 Nov 25 19:33 pilot3.tar.gz
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc      5112 Nov 25 19:46 queuedata.json
[2025-11-26 09:22:01] -rwx------. 1 boinc boinc     36292 Nov 25 19:50 runpilot2-wrapper.sh
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc       100 Nov 26 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:22:01] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 09:11 run_atlas
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc       105 Nov 26 09:11 job.xml
[2025-11-26 09:22:01] -rw-r--r--. 2 boinc boinc 408573223 Nov 26 09:12 EVNT.47483658._002448.pool.root.1
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc      6595 Nov 26 09:12 init_data.xml
[2025-11-26 09:22:01] drwxrwx--x. 2 boinc boinc      4096 Nov 26 09:12 shared
[2025-11-26 09:22:01] -rw-r--r--. 2 boinc boinc    590108 Nov 26 09:12 input.tar.gz
[2025-11-26 09:22:01] -rw-r--r--. 2 boinc boinc     15847 Nov 26 09:12 start_atlas.sh
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc         0 Nov 26 09:12 boinc_lockfile
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc      2785 Nov 26 09:12 pandaJob.out
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc    991545 Nov 26 09:12 agis_schedconf.cvmfs.json
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc   1516240 Nov 26 09:12 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:22:01] drwx------. 5 boinc boinc      4096 Nov 26 09:12 pilot3
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc       524 Nov 26 09:18 boinc_task_state.xml
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc       997 Nov 26 09:18 memory_monitor_summary.json
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc     51924 Nov 26 09:18 log.47556161._004306.job.log.tgz.1
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc        95 Nov 26 09:20 pilot_heartbeat.json
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc     10342 Nov 26 09:21 heartbeat.json
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc        23 Nov 26 09:22 wrapper_checkpoint.txt
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc      5008 Nov 26 09:22 pilotlog.txt
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc      8192 Nov 26 09:22 boinc_mmap_file
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc    125379 Nov 26 09:22 log.47556161._004306.job.log.1
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc       186 Nov 26 09:22 output.list
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc       620 Nov 26 09:22 runtime_log
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc    194560 Nov 26 09:22 result.tar.gz
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc      8636 Nov 26 09:22 runtime_log.err
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc       647 Nov 26 09:22 gbrNDmniLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAsMKDmmmM0Hn.diag
[2025-11-26 09:22:01] -rw-r--r--. 1 boinc boinc     22556 Nov 26 09:22 stderr.txt
[2025-11-26 09:22:01] No HITS result produced
[2025-11-26 09:22:01]  *** Contents of shared directory: ***
[2025-11-26 09:22:01] total 399792
[2025-11-26 09:22:01] -rw-r--r--. 2 boinc boinc 408573223 Nov 26 09:12 ATLAS.root_0
[2025-11-26 09:22:01] -rw-r--r--. 2 boinc boinc    590108 Nov 26 09:12 input.tar.gz
[2025-11-26 09:22:01] -rw-r--r--. 2 boinc boinc     15847 Nov 26 09:12 start_atlas.sh
[2025-11-26 09:22:01] -rw-------. 1 boinc boinc    194560 Nov 26 09:22 result.tar.gz
09:22:02 (299956): run_atlas exited; CPU time 58.847300
09:22:02 (299956): called boinc_finish(0)

</stderr_txt>
]]>

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