Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:29:11 (556277): wrapper (7.7.26015): starting
18:29:11 (556277): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 18:29:11] Arguments: --nthreads 3
[2025-11-26 18:29:11] Threads: 3
[2025-11-26 18:29:11] Checking for CVMFS
[2025-11-26 18:29:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:29:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:29:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:29:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:29:11] 2.9.2.0 368311 40 58800 153330 3 88 35728217 36864001 0 130560 0 563464 99.998 2739 8613 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 18:29:11] CVMFS is ok
[2025-11-26 18:29:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:29:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:29:11] Further information can be found at the LHC@home message board.
[2025-11-26 18:29:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:29:11] Checking for apptainer binary...
[2025-11-26 18:29:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:29:11] Running /usr/bin/apptainer --version
[2025-11-26 18:29:11] apptainer version 1.4.1-1.1
[2025-11-26 18:29:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:29:11] thA335
[2025-11-26 18:29:11] apptainer works
[2025-11-26 18:29:11] Set ATHENA_PROC_NUMBER=3
[2025-11-26 18:29:11] Set ATHENA_CORE_NUMBER=3
[2025-11-26 18:29:11] Starting ATLAS job with PandaID=6897487746
[2025-11-26 18:29:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:33:29]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:33:29] 2025-11-26 17:32:37,812 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:33:29] 2025-11-26 17:32:37,813 | INFO     | update_server=False
[2025-11-26 18:33:29] 2025-11-26 17:32:37,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:33:29] 2025-11-26 17:32:37,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:33:29] 2025-11-26 17:32:38,140 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 18:33:29] 2025-11-26 17:32:38,141 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 18:33:29] 2025-11-26 17:32:38,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:33:29] 2025-11-26 17:32:38,141 | INFO     | will abort loop
[2025-11-26 18:33:29] 2025-11-26 17:32:38,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:33:29] 2025-11-26 17:32:38,456 | INFO     | all data control threads have been joined
[2025-11-26 18:33:29] 2025-11-26 17:32:38,762 | INFO     | all payload control threads have been joined
[2025-11-26 18:33:29] 2025-11-26 17:32:38,819 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:38,819 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,147 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,342 | INFO     | all job control threads have been joined
[2025-11-26 18:33:29] 2025-11-26 17:32:39,356 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,463 | INFO     | [data] control thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,578 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,585 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,727 | INFO     | [job] validate thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,767 | INFO     | [payload] control thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,805 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:39,849 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:40,068 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:40,097 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:40,189 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:40,348 | INFO     | [job] control thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:32:40,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:33:29] 2025-11-26 17:32:44,430 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:33:29] 2025-11-26 17:33:07,855 | INFO     | PID=560017 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 18:33:29] 2025-11-26 17:33:07,855 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:33:29] 2025-11-26 17:33:07,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:33:29] 2025-11-26 17:33:07,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:33:29] 2025-11-26 17:33:23,014 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:33:29] 2025-11-26 17:33:24,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139907266410304)>', '<ExcThread(monitor, started 139906403788544)>']
[2025-11-26 18:33:29] 2025-11-26 17:33:24,945 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:33:29] 2025-11-26 17:33:24,946 | INFO     | [monitor] control thread has ended
[2025-11-26 18:33:29] 2025-11-26 17:33:29,301 | INFO     | all workflow threads have been joined
[2025-11-26 18:33:29] 2025-11-26 17:33:29,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:33:29] 2025-11-26 17:33:29,302 | INFO     | traces error code: 0
[2025-11-26 18:33:29] 2025-11-26 17:33:29,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:33:29] 2025-11-26 17:33:29,349 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:33:29] 2025-11-26 17:33:29,352 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:33:29] 2025-11-26 17:33:29,355 [wrapper] pilotpid: 560017
[2025-11-26 18:33:29] 2025-11-26 17:33:29,358 [wrapper] Pilot exit status: 0
[2025-11-26 18:33:29] 2025-11-26 17:33:29,366 [wrapper] pandaids: 6897487746
[2025-11-26 18:33:29] 2025-11-26 17:33:29,384 [wrapper] cleanup supervisor_pilot  560023 560018
[2025-11-26 18:33:29] 2025-11-26 17:33:29,387 [wrapper] Test setup, not cleaning
[2025-11-26 18:33:29] 2025-11-26 17:33:29,390 [wrapper] apfmon messages muted
[2025-11-26 18:33:29] 2025-11-26 17:33:29,392 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:33:29] 2025-11-26 17:33:29,395 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:33:29]  *** Error codes and diagnostics ***
[2025-11-26 18:33:29]     "exeErrorCode": 65,
[2025-11-26 18:33:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 18:33:29]     "pilotErrorCode": 1305,
[2025-11-26 18:33:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 18:33:29]  *** Listing of results directory ***
[2025-11-26 18:33:29] total 405592
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc      5112 Nov 25 17:55 queuedata.json
[2025-11-26 18:33:29] -rwx------ 1 boinc boinc     36292 Nov 25 17:57 runpilot2-wrapper.sh
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc       100 Nov 26 18:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:33:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 18:29 run_atlas
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc       105 Nov 26 18:29 job.xml
[2025-11-26 18:33:29] -rw-r--r-- 2 boinc boinc 411144140 Nov 26 18:29 EVNT.47483658._002252.pool.root.1
[2025-11-26 18:33:29] -rw-r--r-- 2 boinc boinc    590104 Nov 26 18:29 input.tar.gz
[2025-11-26 18:33:29] -rw-r--r-- 2 boinc boinc     15847 Nov 26 18:29 start_atlas.sh
[2025-11-26 18:33:29] drwxrwx--x 2 boinc boinc      4096 Nov 26 18:29 shared
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc         0 Nov 26 18:29 boinc_setup_complete
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc      6196 Nov 26 18:29 init_data.xml
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc         0 Nov 26 18:29 boinc_lockfile
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc      2786 Nov 26 18:29 pandaJob.out
[2025-11-26 18:33:29] -rw------- 1 boinc boinc    991530 Nov 26 18:29 agis_schedconf.cvmfs.json
[2025-11-26 18:33:29] -rw------- 1 boinc boinc   1516240 Nov 26 18:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:33:29] drwx------ 5 boinc boinc      4096 Nov 26 18:29 pilot3
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc       522 Nov 26 18:30 boinc_task_state.xml
[2025-11-26 18:33:29] -rw------- 1 boinc boinc       962 Nov 26 18:30 memory_monitor_summary.json
[2025-11-26 18:33:29] -rw------- 1 boinc boinc     55683 Nov 26 18:30 log.47556161._002352.job.log.tgz.1
[2025-11-26 18:33:29] -rw------- 1 boinc boinc        95 Nov 26 18:32 pilot_heartbeat.json
[2025-11-26 18:33:29] -rw------- 1 boinc boinc      8399 Nov 26 18:32 heartbeat.json
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc      8192 Nov 26 18:33 boinc_mmap_file
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc        22 Nov 26 18:33 wrapper_checkpoint.txt
[2025-11-26 18:33:29] -rw------- 1 boinc boinc      4937 Nov 26 18:33 pilotlog.txt
[2025-11-26 18:33:29] -rw------- 1 boinc boinc     93606 Nov 26 18:33 log.47556161._002352.job.log.1
[2025-11-26 18:33:29] -rw------- 1 boinc boinc       186 Nov 26 18:33 output.list
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc       620 Nov 26 18:33 runtime_log
[2025-11-26 18:33:29] -rw------- 1 boinc boinc    163840 Nov 26 18:33 result.tar.gz
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc      8744 Nov 26 18:33 runtime_log.err
[2025-11-26 18:33:29] -rw------- 1 boinc boinc       649 Nov 26 18:33 bZWMDmGXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5bJKDmczevvm.diag
[2025-11-26 18:33:29] -rw-r--r-- 1 boinc boinc      8114 Nov 26 18:33 stderr.txt
[2025-11-26 18:33:29] No HITS result produced
[2025-11-26 18:33:29]  *** Contents of shared directory: ***
[2025-11-26 18:33:29] total 402268
[2025-11-26 18:33:29] -rw-r--r-- 2 boinc boinc 411144140 Nov 26 18:29 ATLAS.root_0
[2025-11-26 18:33:29] -rw-r--r-- 2 boinc boinc    590104 Nov 26 18:29 input.tar.gz
[2025-11-26 18:33:29] -rw-r--r-- 2 boinc boinc     15847 Nov 26 18:29 start_atlas.sh
[2025-11-26 18:33:29] -rw------- 1 boinc boinc    163840 Nov 26 18:33 result.tar.gz
18:33:30 (556277): run_atlas exited; CPU time 31.845672
18:33:30 (556277): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN