Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:27:43 (2174846): wrapper (7.7.26015): starting
17:27:43 (2174846): wrapper: running run_atlas (--nthreads 6)
[2025-11-27 17:27:43] Arguments: --nthreads 6
[2025-11-27 17:27:43] Threads: 6
[2025-11-27 17:27:43] Checking for CVMFS
[2025-11-27 17:27:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:27:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:27:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:27:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:27:44] 2.13.3.0 1560231 2813 74940 153356 0 72 19182553 20971521 916 130560 0 2111906 99.989 113733 16 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-11-27 17:27:44] CVMFS is ok
[2025-11-27 17:27:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:27:44] Checking for apptainer binary...
[2025-11-27 17:27:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 17:27:44] Running /usr/bin/apptainer --version
[2025-11-27 17:27:44] apptainer version 1.4.4-1.el9
[2025-11-27 17:27:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:27:44] testio005
[2025-11-27 17:27:44] apptainer works
[2025-11-27 17:27:44] Set ATHENA_PROC_NUMBER=6
[2025-11-27 17:27:44] Set ATHENA_CORE_NUMBER=6
[2025-11-27 17:27:44] Starting ATLAS job with PandaID=6897394528
[2025-11-27 17:27:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 04:20:09]  *** The last 200 lines of the pilot log: ***
[2025-11-28 04:20:09] 2025-11-27 19:19:27,158 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 04:20:09] 2025-11-27 19:19:27,158 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 04:20:09] 2025-11-27 19:19:27,167 | INFO     | fitting pss+swap vs Time
[2025-11-28 04:20:09] 2025-11-27 19:19:27,168 | INFO     | sum of square deviations: 80905783067.94354
[2025-11-28 04:20:09] 2025-11-27 19:19:27,176 | INFO     | sum of deviations: 792285542021.8589
[2025-11-28 04:20:09] 2025-11-27 19:19:27,176 | INFO     | mean x: 1764251563.0093896
[2025-11-28 04:20:09] 2025-11-27 19:19:27,176 | INFO     | mean y: 2663954.3568075118
[2025-11-28 04:20:09] 2025-11-27 19:19:27,176 | INFO     | intersect: -17274110991.2359
[2025-11-28 04:20:09] 2025-11-27 19:19:27,177 | INFO     | chi2: 9.261451858710966
[2025-11-28 04:20:09] 2025-11-27 19:19:27,177 | INFO     | sum of square deviations: 79021405380.44325
[2025-11-28 04:20:09] 2025-11-27 19:19:27,185 | INFO     | sum of deviations: 977400499846.802
[2025-11-28 04:20:09] 2025-11-27 19:19:27,185 | INFO     | mean x: 1764251410.5094638
[2025-11-28 04:20:09] 2025-11-27 19:19:27,185 | INFO     | mean y: 2678937.449526814
[2025-11-28 04:20:09] 2025-11-27 19:19:27,185 | INFO     | intersect: -21819005986.849937
[2025-11-28 04:20:09] 2025-11-27 19:19:27,186 | INFO     | chi2: 6.471016856249053
[2025-11-28 04:20:09] 2025-11-27 19:19:27,186 | INFO     | current chi2=6.471016856249053 (change=30.129563323674112 %)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,187 | INFO     | sum of square deviations: 77166516617.94266
[2025-11-28 04:20:09] 2025-11-27 19:19:27,194 | INFO     | sum of deviations: 1091084131947.5227
[2025-11-28 04:20:09] 2025-11-27 19:19:27,194 | INFO     | mean x: 1764251258.009539
[2025-11-28 04:20:09] 2025-11-27 19:19:27,194 | INFO     | mean y: 2688255.079491256
[2025-11-28 04:20:09] 2025-11-27 19:19:27,194 | INFO     | intersect: -24942671944.51615
[2025-11-28 04:20:09] 2025-11-27 19:19:27,195 | INFO     | chi2: 4.829109877655599
[2025-11-28 04:20:09] 2025-11-27 19:19:27,195 | INFO     | current chi2=4.829109877655599 (change=25.373245273003214 %)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,196 | INFO     | sum of square deviations: 75340884217.94232
[2025-11-28 04:20:09] 2025-11-27 19:19:27,203 | INFO     | sum of deviations: 1077483800071.5758
[2025-11-28 04:20:09] 2025-11-27 19:19:27,203 | INFO     | mean x: 1764251105.5096154
[2025-11-28 04:20:09] 2025-11-27 19:19:27,204 | INFO     | mean y: 2687119.0705128205
[2025-11-28 04:20:09] 2025-11-27 19:19:27,204 | INFO     | intersect: -25228659780.78801
[2025-11-28 04:20:09] 2025-11-27 19:19:27,204 | INFO     | chi2: 4.822933388651708
[2025-11-28 04:20:09] 2025-11-27 19:19:27,204 | INFO     | current chi2=4.822933388651708 (change=0.12790119008203618 %)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,204 | INFO     | right removable region: 623
[2025-11-28 04:20:09] 2025-11-27 19:19:27,205 | INFO     | sum of square deviations: 79021401720.44325
[2025-11-28 04:20:09] 2025-11-27 19:19:27,212 | INFO     | sum of deviations: 599132113790.6647
[2025-11-28 04:20:09] 2025-11-27 19:19:27,213 | INFO     | mean x: 1764251715.5094638
[2025-11-28 04:20:09] 2025-11-27 19:19:27,213 | INFO     | mean y: 2679576.8059936906
[2025-11-28 04:20:09] 2025-11-27 19:19:27,213 | INFO     | intersect: -13373694880.729536
[2025-11-28 04:20:09] 2025-11-27 19:19:27,213 | INFO     | chi2: 6.503558785346534
[2025-11-28 04:20:09] 2025-11-27 19:19:27,214 | INFO     | current chi2=6.503558785346534 (change=29.778193694009904 %)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,214 | INFO     | sum of square deviations: 77166509297.94266
[2025-11-28 04:20:09] 2025-11-27 19:19:27,221 | INFO     | sum of deviations: 446005125877.91565
[2025-11-28 04:20:09] 2025-11-27 19:19:27,222 | INFO     | mean x: 1764251868.009539
[2025-11-28 04:20:09] 2025-11-27 19:19:27,222 | INFO     | mean y: 2692161.8473767885
[2025-11-28 04:20:09] 2025-11-27 19:19:27,222 | INFO     | intersect: -10194288155.53133
[2025-11-28 04:20:09] 2025-11-27 19:19:27,222 | INFO     | chi2: 4.905236864236618
[2025-11-28 04:20:09] 2025-11-27 19:19:27,222 | INFO     | current chi2=4.905236864236618 (change=24.576112461859633 %)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,223 | INFO     | left removable region: 20
[2025-11-28 04:20:09] 2025-11-27 19:19:27,223 | INFO     | sum of square deviations: 67987444505.940125
[2025-11-28 04:20:09] 2025-11-27 19:19:27,230 | INFO     | sum of deviations: 655138467884.3927
[2025-11-28 04:20:09] 2025-11-27 19:19:27,230 | INFO     | mean x: 1764251685.0099502
[2025-11-28 04:20:09] 2025-11-27 19:19:27,230 | INFO     | mean y: 2723061.1011608625
[2025-11-28 04:20:09] 2025-11-27 19:19:27,230 | INFO     | intersect: -16997903367.487297
[2025-11-28 04:20:09] 2025-11-27 19:19:27,231 | INFO     | chi2: 0.23455384789880182
[2025-11-28 04:20:09] 2025-11-27 19:19:27,231 | INFO     | current memory leak: 9.64 B/s (using 603 data points, chi2=0.23)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,231 | INFO     | could have reported an average CPU frequency of 3295 MHz (24 samples)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | ..............................
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | . Timing measurements:
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | . get job = 0 s
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | . initial setup = 7 s
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | . payload setup = 5 s
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | . stage-in = 0 s
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | . payload execution = 38969 s
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | . stage-out = 6 s
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | . log creation = 0 s
[2025-11-28 04:20:09] 2025-11-27 19:19:27,232 | INFO     | ..............................
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | 
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | job summary report
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | --------------------------------------------------
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | PanDA job id: 6897394528
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | task id: 47556161
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | errors: (none)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | pilot state: finished 
[2025-11-28 04:20:09] 2025-11-27 19:19:27,311 | INFO     | transexitcode: 0
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | exeerrorcode: 0
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | exeerrordiag: 
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | exitcode: 0
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | exitmsg: OK
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | cpuconsumptiontime: 223565 s
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | nevents: 1000
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | neventsw: 0
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | pid: 2185320
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | pgrp: 2185320
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | corecount: 6
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | event service: False
[2025-11-28 04:20:09] 2025-11-27 19:19:27,312 | INFO     | sizes: {0: 2284265, 4: 2284527, 11: 2284555, 38978: 2327480, 38986: 2336474, 38989: 2336530, 39073: 2336904}
[2025-11-28 04:20:09] 2025-11-27 19:19:27,313 | INFO     | --------------------------------------------------
[2025-11-28 04:20:09] 2025-11-27 19:19:27,313 | INFO     | 
[2025-11-28 04:20:09] 2025-11-27 19:19:27,313 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-28 04:20:09] 2025-11-27 19:19:27,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,330 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,331 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,332 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 04:20:09] 2025-11-27 19:19:27,332 | INFO     | job 6897394528 has completed (purged errors)
[2025-11-28 04:20:09] 2025-11-27 19:19:27,332 | INFO     | overall cleanup function is called
[2025-11-28 04:20:09] 2025-11-27 19:19:28,344 | INFO     | --- collectZombieJob: --- 10, [2185320]
[2025-11-28 04:20:09] 2025-11-27 19:19:28,344 | INFO     | zombie collector waiting for pid 2185320
[2025-11-28 04:20:09] 2025-11-27 19:19:28,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 04:20:09] 2025-11-27 19:19:28,344 | INFO     | collected zombie processes
[2025-11-28 04:20:09] 2025-11-27 19:19:28,344 | INFO     | will attempt to kill all subprocesses of pid=2185320
[2025-11-28 04:20:09] 2025-11-27 19:19:28,436 | INFO     | process IDs to be killed: [2185320] (in reverse order)
[2025-11-28 04:20:09] 2025-11-27 19:19:28,477 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 04:20:09] 2025-11-27 19:19:28,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 04:20:09] 2025-11-27 19:19:28,479 | INFO     | did not find any defunct processes belonging to 2185320
[2025-11-28 04:20:09] 2025-11-27 19:19:28,482 | INFO     | did not find any defunct processes belonging to 2185320
[2025-11-28 04:20:09] 2025-11-27 19:19:28,484 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 04:20:09] 2025-11-27 19:19:28,484 | INFO     | ready for new job
[2025-11-28 04:20:09] 2025-11-27 19:19:28,484 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 04:20:09] 2025-11-27 19:19:28,486 | INFO     | ***************************************
[2025-11-28 04:20:09] 2025-11-27 19:19:28,486 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 04:20:09] 2025-11-27 19:19:28,486 | INFO     | ***************************************
[2025-11-28 04:20:09] 2025-11-27 19:19:28,486 | INFO     | 
[2025-11-28 04:20:09] 2025-11-27 19:19:28,487 | INFO     | architecture information:
[2025-11-28 04:20:09] 2025-11-27 19:19:28,488 | INFO     | executing command: cat /etc/os-release
[2025-11-28 04:20:09] 2025-11-27 19:19:28,501 | INFO     | cat /etc/os-release:
[2025-11-28 04:20:09] NAME="CentOS Linux"
[2025-11-28 04:20:09] VERSION="7 (Core)"
[2025-11-28 04:20:09] ID="centos"
[2025-11-28 04:20:09] ID_LIKE="rhel fedora"
[2025-11-28 04:20:09] VERSION_ID="7"
[2025-11-28 04:20:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 04:20:09] ANSI_COLOR="0;31"
[2025-11-28 04:20:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 04:20:09] HOME_URL="https://www.centos.org/"
[2025-11-28 04:20:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 04:20:09] 
[2025-11-28 04:20:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 04:20:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 04:20:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 04:20:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 04:20:09] 
[2025-11-28 04:20:09] 2025-11-27 19:19:28,501 | INFO     | ***************************************
[2025-11-28 04:20:09] 2025-11-27 19:19:29,004 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-28 04:20:09] 2025-11-27 19:19:29,021 | INFO     | sufficient remaining disk space (89572507648 B)
[2025-11-28 04:20:09] 2025-11-27 19:19:29,022 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 04:20:09] 2025-11-27 19:19:29,022 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 04:20:09] 2025-11-27 19:19:29,022 | INFO     | update_server=False
[2025-11-28 04:20:09] 2025-11-27 19:19:29,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 04:20:09] 2025-11-27 19:19:29,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 04:20:09] 2025-11-27 19:19:29,022 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:20:09] 2025-11-27 19:19:29,293 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:20:09] 2025-11-27 19:19:29,293 | INFO     | aborting loop
[2025-11-28 04:20:09] 2025-11-27 19:19:29,856 | INFO     | all job control threads have been joined
[2025-11-28 04:20:09] 2025-11-27 19:19:30,027 | INFO     | [job] retrieve thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:30,027 | INFO     | [job] queue monitor thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:30,030 | INFO     | all payload control threads have been joined
[2025-11-28 04:20:09] 2025-11-27 19:19:30,072 | INFO     | all data control threads have been joined
[2025-11-28 04:20:09] 2025-11-27 19:19:30,126 | INFO     | [data] copytool_in thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:30,298 | INFO     | [job] job monitor thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:30,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 04:20:09] 2025-11-27 19:19:30,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:30,784 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:30,861 | INFO     | [job] control thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:30,929 | INFO     | [job] validate thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:31,003 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:31,023 | INFO     | [data] copytool_out thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:31,035 | INFO     | [payload] control thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:31,062 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:31,077 | INFO     | [data] control thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:31,275 | INFO     | [payload] validate_post thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:31,456 | INFO     | [payload] failed_post thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:34,345 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 04:20:09] 2025-11-27 19:19:59,205 | INFO     | PID=2178621 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 04:20:09] 2025-11-27 19:19:59,205 | INFO     | .. there are 2 such processes running
[2025-11-28 04:20:09] 2025-11-27 19:19:59,206 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 04:20:09] 2025-11-27 19:19:59,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 04:20:09] 2025-11-27 19:19:59,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 04:20:09] 2025-11-27 19:20:03,638 | INFO     | [monitor] cgroup control has ended
[2025-11-28 04:20:09] 2025-11-27 19:20:04,268 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394900830016)>', '<ExcThread(monitor, started 140394394269440)>']
[2025-11-28 04:20:09] 2025-11-27 19:20:05,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 04:20:09] 2025-11-27 19:20:05,236 | INFO     | [monitor] control thread has ended
[2025-11-28 04:20:09] 2025-11-27 19:20:09,278 | INFO     | all workflow threads have been joined
[2025-11-28 04:20:09] 2025-11-27 19:20:09,278 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 04:20:09] 2025-11-27 19:20:09,279 | INFO     | traces error code: 0
[2025-11-28 04:20:09] 2025-11-27 19:20:09,279 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 04:20:09] 2025-11-27 19:20:09,378 [wrapper] ==== pilot stdout END ====
[2025-11-28 04:20:09] 2025-11-27 19:20:09,382 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 04:20:09] 2025-11-27 19:20:09,385 [wrapper] pilotpid: 2178621
[2025-11-28 04:20:09] 2025-11-27 19:20:09,387 [wrapper] Pilot exit status: 0
[2025-11-28 04:20:09] 2025-11-27 19:20:09,397 [wrapper] pandaids: 6897394528
[2025-11-28 04:20:09] 2025-11-27 19:20:09,425 [wrapper] cleanup supervisor_pilot 2314174 2178622
[2025-11-28 04:20:09] 2025-11-27 19:20:09,427 [wrapper] Test setup, not cleaning
[2025-11-28 04:20:09] 2025-11-27 19:20:09,430 [wrapper] apfmon messages muted
[2025-11-28 04:20:09] 2025-11-27 19:20:09,432 [wrapper] ==== wrapper stdout END ====
[2025-11-28 04:20:09] 2025-11-27 19:20:09,434 [wrapper] ==== wrapper stderr END ====
[2025-11-28 04:20:09]  *** Error codes and diagnostics ***
[2025-11-28 04:20:09]     "exeErrorCode": 0,
[2025-11-28 04:20:09]     "exeErrorDiag": "",
[2025-11-28 04:20:09]     "pilotErrorCode": 0,
[2025-11-28 04:20:09]     "pilotErrorDiag": "",
[2025-11-28 04:20:09]  *** Listing of results directory ***
[2025-11-28 04:20:09] total 1324908
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc    576529 Nov 26 01:48 pilot3.tar.gz
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc      5112 Nov 26 01:55 queuedata.json
[2025-11-28 04:20:09] -rwx------. 1 boinc boinc     36292 Nov 26 01:57 runpilot2-wrapper.sh
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc       100 Nov 27 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 04:20:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 17:27 run_atlas
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc       105 Nov 27 17:27 job.xml
[2025-11-28 04:20:09] -rw-r--r--. 2 boinc boinc 410153417 Nov 27 17:27 EVNT.47483658._002223.pool.root.1
[2025-11-28 04:20:09] -rw-r--r--. 2 boinc boinc     15847 Nov 27 17:27 start_atlas.sh
[2025-11-28 04:20:09] drwxrwx--x. 2 boinc boinc        68 Nov 27 17:27 shared
[2025-11-28 04:20:09] -rw-r--r--. 2 boinc boinc    590105 Nov 27 17:27 input.tar.gz
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc         0 Nov 27 17:27 boinc_lockfile
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc      2786 Nov 27 17:27 pandaJob.out
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc    991573 Nov 27 17:27 agis_schedconf.cvmfs.json
[2025-11-28 04:20:09] drwx------. 5 boinc boinc      4096 Nov 27 17:27 pilot3
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc      9370 Nov 27 19:05 init_data.xml
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc       533 Nov 28 04:07 boinc_task_state.xml
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc 928324621 Nov 28 04:17 HITS.47556161._002066.pool.root.1
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc      1031 Nov 28 04:17 memory_monitor_summary.json
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc   1516240 Nov 28 04:17 agis_ddmendpoints.agis.ALL.json
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc   1674988 Nov 28 04:17 log.47556161._002066.job.log.tgz.1
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc        95 Nov 28 04:19 pilot_heartbeat.json
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc      8587 Nov 28 04:19 heartbeat.json
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc      8192 Nov 28 04:19 boinc_mmap_file
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc        29 Nov 28 04:19 wrapper_checkpoint.txt
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc      4823 Nov 28 04:20 pilotlog.txt
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc   5480950 Nov 28 04:20 log.47556161._002066.job.log.1
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc       353 Nov 28 04:20 output.list
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc       620 Nov 28 04:20 runtime_log
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc   7178240 Nov 28 04:20 result.tar.gz
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc       651 Nov 28 04:20 xl7LDmDXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAVMKDmjpcRcn.diag
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc      8776 Nov 28 04:20 runtime_log.err
[2025-11-28 04:20:09] -rw-r--r--. 1 boinc boinc     20793 Nov 28 04:20 stderr.txt
[2025-11-28 04:20:09] HITS file was successfully produced:
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc 928324621 Nov 28 04:17 shared/HITS.pool.root.1
[2025-11-28 04:20:09]  *** Contents of shared directory: ***
[2025-11-28 04:20:09] total 1314720
[2025-11-28 04:20:09] -rw-r--r--. 2 boinc boinc 410153417 Nov 27 17:27 ATLAS.root_0
[2025-11-28 04:20:09] -rw-r--r--. 2 boinc boinc     15847 Nov 27 17:27 start_atlas.sh
[2025-11-28 04:20:09] -rw-r--r--. 2 boinc boinc    590105 Nov 27 17:27 input.tar.gz
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc 928324621 Nov 28 04:17 HITS.pool.root.1
[2025-11-28 04:20:09] -rw-------. 1 boinc boinc   7178240 Nov 28 04:20 result.tar.gz
04:20:10 (2174846): run_atlas exited; CPU time 223514.207316
04:20:10 (2174846): called boinc_finish(0)

</stderr_txt>
]]>

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