Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:21:13 (2365): wrapper (7.7.26015): starting
16:21:13 (2365): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 16:21:13] Arguments: --nthreads 8
[2025-11-28 16:21:13] Threads: 8
[2025-11-28 16:21:13] Checking for CVMFS
[2025-11-28 16:21:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 16:21:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 16:21:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 16:21:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 16:21:16] 2.11.2.0 4250 85930 91720 153408 2 276 23728017 25165825 1318 130560 19 23678696 99.889 14059102 1683 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 16:21:16] CVMFS is ok
[2025-11-28 16:21:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 16:21:16] Checking for apptainer binary...
[2025-11-28 16:21:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 16:21:16] Running /usr/bin/apptainer --version
[2025-11-28 16:21:16] apptainer version 1.3.2-1.el7
[2025-11-28 16:21:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 16:21:24] cg-vwn215.simple-grid.lan
[2025-11-28 16:21:24] apptainer works
[2025-11-28 16:21:24] Set ATHENA_PROC_NUMBER=8
[2025-11-28 16:21:24] Set ATHENA_CORE_NUMBER=8
[2025-11-28 16:21:25] Starting ATLAS job with PandaID=6897487274
[2025-11-28 16:21:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 16:05:58]  *** The last 200 lines of the pilot log: ***
[2025-11-29 16:05:58] 2025-11-29 15:04:59,664 | INFO     | monitor loop #5752: job 0:6897487274 is in state 'finished'
[2025-11-29 16:05:58] 2025-11-29 15:04:59,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:05:58] 2025-11-29 15:05:00,450 | INFO     | time since job start (85181s) is within the limit (172800.0s)
[2025-11-29 16:05:58] 2025-11-29 15:05:02,175 | INFO     | monitor loop #5753: job 0:6897487274 is in state 'finished'
[2025-11-29 16:05:58] 2025-11-29 15:05:02,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:05:58] 2025-11-29 15:05:02,462 | INFO     | time since job start (85183s) is within the limit (172800.0s)
[2025-11-29 16:05:58] 2025-11-29 15:05:04,469 | INFO     | time since job start (85185s) is within the limit (172800.0s)
[2025-11-29 16:05:58] 2025-11-29 15:05:04,684 | INFO     | monitor loop #5754: job 0:6897487274 is in state 'finished'
[2025-11-29 16:05:58] 2025-11-29 15:05:04,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:05:58] 2025-11-29 15:05:06,476 | INFO     | time since job start (85187s) is within the limit (172800.0s)
[2025-11-29 16:05:58] 2025-11-29 15:05:07,193 | INFO     | monitor loop #5755: job 0:6897487274 is in state 'finished'
[2025-11-29 16:05:58] 2025-11-29 15:05:07,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:05:58] 2025-11-29 15:05:08,483 | INFO     | time since job start (85189s) is within the limit (172800.0s)
[2025-11-29 16:05:58] 2025-11-29 15:05:09,653 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 16:05:58] 2025-11-29 15:05:09,654 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 16:05:58] 2025-11-29 15:05:09,656 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6897487274/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 16:05:58] 2025-11-29 15:05:09,657 | INFO     | extracted standard info from prmon json
[2025-11-29 16:05:58] 2025-11-29 15:05:09,657 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 16:05:58] 2025-11-29 15:05:09,657 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 16:05:58] 2025-11-29 15:05:09,684 | INFO     | fitting pss+swap vs Time
[2025-11-29 16:05:58] 2025-11-29 15:05:09,686 | INFO     | sum of square deviations: 825594585147.4053
[2025-11-29 16:05:58] 2025-11-29 15:05:09,708 | INFO     | monitor loop #5756: job 0:6897487274 is in state 'finished'
[2025-11-29 16:05:58] 2025-11-29 15:05:09,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:05:58] 2025-11-29 15:05:09,760 | INFO     | sum of deviations: 2790665578285.0044
[2025-11-29 16:05:58] 2025-11-29 15:05:09,761 | INFO     | mean x: 1764386328.589466
[2025-11-29 16:05:58] 2025-11-29 15:05:09,761 | INFO     | mean y: 2835364.2056277054
[2025-11-29 16:05:58] 2025-11-29 15:05:09,761 | INFO     | intersect: -5961123560.152094
[2025-11-29 16:05:58] 2025-11-29 15:05:09,763 | INFO     | chi2: 24.83544481356476
[2025-11-29 16:05:58] 2025-11-29 15:05:09,765 | INFO     | sum of square deviations: 816692208998.9487
[2025-11-29 16:05:58] 2025-11-29 15:05:09,825 | INFO     | sum of deviations: 3245487293868.9697
[2025-11-29 16:05:58] 2025-11-29 15:05:09,826 | INFO     | mean x: 1764386176.0934105
[2025-11-29 16:05:58] 2025-11-29 15:05:09,826 | INFO     | mean y: 2843154.3258508327
[2025-11-29 16:05:58] 2025-11-29 15:05:09,826 | INFO     | intersect: -7008724793.662978
[2025-11-29 16:05:58] 2025-11-29 15:05:09,828 | INFO     | chi2: 21.6449600441351
[2025-11-29 16:05:58] 2025-11-29 15:05:09,828 | INFO     | current chi2=21.6449600441351 (change=12.846497388631681 %)
[2025-11-29 16:05:58] 2025-11-29 15:05:09,828 | INFO     | right removable region: 1380
[2025-11-29 16:05:58] 2025-11-29 15:05:09,830 | INFO     | sum of square deviations: 816691287898.9484
[2025-11-29 16:05:58] 2025-11-29 15:05:09,902 | INFO     | sum of deviations: 2222308349156.9043
[2025-11-29 16:05:58] 2025-11-29 15:05:09,903 | INFO     | mean x: 1764386481.0934105
[2025-11-29 16:05:58] 2025-11-29 15:05:09,903 | INFO     | mean y: 2845098.737146995
[2025-11-29 16:05:58] 2025-11-29 15:05:09,903 | INFO     | intersect: -4798247879.933901
[2025-11-29 16:05:58] 2025-11-29 15:05:09,905 | INFO     | chi2: 20.317590723473945
[2025-11-29 16:05:58] 2025-11-29 15:05:09,905 | INFO     | current chi2=20.317590723473945 (change=18.19115431193416 %)
[2025-11-29 16:05:58] 2025-11-29 15:05:09,905 | INFO     | left removable region: 10
[2025-11-29 16:05:58] 2025-11-29 15:05:09,907 | INFO     | sum of square deviations: 797330914668.1927
[2025-11-29 16:05:58] 2025-11-29 15:05:09,978 | INFO     | sum of deviations: 2292051943565.3564
[2025-11-29 16:05:58] 2025-11-29 15:05:09,978 | INFO     | mean x: 1764386450.6021898
[2025-11-29 16:05:58] 2025-11-29 15:05:09,978 | INFO     | mean y: 2863182.0153284674
[2025-11-29 16:05:58] 2025-11-29 15:05:09,978 | INFO     | intersect: -5069140573.145799
[2025-11-29 16:05:58] 2025-11-29 15:05:09,980 | INFO     | chi2: 13.080396665664157
[2025-11-29 16:05:58] 2025-11-29 15:05:09,980 | INFO     | current memory leak: 2.87 B/s (using 1370 data points, chi2=13.08)
[2025-11-29 16:05:58] 2025-11-29 15:05:09,983 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 16:05:58] 2025-11-29 15:05:09,983 | INFO     | ..............................
[2025-11-29 16:05:58] 2025-11-29 15:05:09,983 | INFO     | . Timing measurements:
[2025-11-29 16:05:58] 2025-11-29 15:05:09,983 | INFO     | . get job = 0 s
[2025-11-29 16:05:58] 2025-11-29 15:05:09,983 | INFO     | . initial setup = 4 s
[2025-11-29 16:05:58] 2025-11-29 15:05:09,983 | INFO     | . payload setup = 177 s
[2025-11-29 16:05:58] 2025-11-29 15:05:09,983 | INFO     | . stage-in = 0 s
[2025-11-29 16:05:58] 2025-11-29 15:05:09,984 | INFO     | . payload execution = 84700 s
[2025-11-29 16:05:58] 2025-11-29 15:05:09,984 | INFO     | . stage-out = 5 s
[2025-11-29 16:05:58] 2025-11-29 15:05:09,984 | INFO     | . log creation = 2 s
[2025-11-29 16:05:58] 2025-11-29 15:05:09,984 | INFO     | ..............................
[2025-11-29 16:05:58] 2025-11-29 15:05:10,112 | INFO     | 
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | job summary report
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | --------------------------------------------------
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | PanDA job id: 6897487274
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | task id: 47556161
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | errors: (none)
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | pilot state: finished 
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | transexitcode: 0
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | exeerrorcode: 0
[2025-11-29 16:05:58] 2025-11-29 15:05:10,113 | INFO     | exeerrordiag: 
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | exitcode: 0
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | exitmsg: OK
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | cpuconsumptiontime: 314730 s
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | nevents: 1000
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | neventsw: 0
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | pid: 12755
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | pgrp: 12755
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | corecount: 8
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | event service: False
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | sizes: {0: 2284039, 1: 2284294, 12: 2284294, 23: 2284322, 33: 2284350, 44: 2284406, 55: 2284562, 66: 2284590, 76: 2284618, 87: 2284674, 98: 2284702, 105: 2285272, 
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | --------------------------------------------------
[2025-11-29 16:05:58] 2025-11-29 15:05:10,114 | INFO     | 
[2025-11-29 16:05:58] 2025-11-29 15:05:10,115 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-11-29 16:05:58] 2025-11-29 15:05:10,490 | INFO     | time since job start (85191s) is within the limit (172800.0s)
[2025-11-29 16:05:58] 2025-11-29 15:05:10,525 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,525 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,525 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,525 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,526 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,527 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,527 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 16:05:58] 2025-11-29 15:05:10,527 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,527 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 16:05:58] 2025-11-29 15:05:10,527 | INFO     | job 6897487274 has completed (purged errors)
[2025-11-29 16:05:58] 2025-11-29 15:05:10,527 | INFO     | overall cleanup function is called
[2025-11-29 16:05:58] 2025-11-29 15:05:11,543 | INFO     | --- collectZombieJob: --- 10, [12755]
[2025-11-29 16:05:58] 2025-11-29 15:05:11,543 | INFO     | zombie collector waiting for pid 12755
[2025-11-29 16:05:58] 2025-11-29 15:05:11,543 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 16:05:58] 2025-11-29 15:05:11,543 | INFO     | collected zombie processes
[2025-11-29 16:05:58] 2025-11-29 15:05:11,543 | INFO     | will attempt to kill all subprocesses of pid=12755
[2025-11-29 16:05:58] 2025-11-29 15:05:11,666 | INFO     | process IDs to be killed: [12755] (in reverse order)
[2025-11-29 16:05:58] 2025-11-29 15:05:12,525 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 16:05:58] 2025-11-29 15:05:12,526 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 16:05:58] 2025-11-29 15:05:12,529 | INFO     | did not find any defunct processes belonging to 12755
[2025-11-29 16:05:58] 2025-11-29 15:05:12,531 | INFO     | did not find any defunct processes belonging to 12755
[2025-11-29 16:05:58] 2025-11-29 15:05:12,593 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 16:05:58] 2025-11-29 15:05:12,593 | INFO     | ready for new job
[2025-11-29 16:05:58] 2025-11-29 15:05:12,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 16:05:58] 2025-11-29 15:05:12,598 | INFO     | ***************************************
[2025-11-29 16:05:58] 2025-11-29 15:05:12,599 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 16:05:58] 2025-11-29 15:05:12,599 | INFO     | ***************************************
[2025-11-29 16:05:58] 2025-11-29 15:05:12,599 | INFO     | 
[2025-11-29 16:05:58] 2025-11-29 15:05:12,599 | INFO     | pilot is running in a VM
[2025-11-29 16:05:58] 2025-11-29 15:05:12,599 | INFO     | architecture information:
[2025-11-29 16:05:58] 2025-11-29 15:05:12,613 | INFO     | executing command: cat /etc/os-release
[2025-11-29 16:05:58] 2025-11-29 15:05:12,864 | INFO     | cat /etc/os-release:
[2025-11-29 16:05:58] NAME="CentOS Linux"
[2025-11-29 16:05:58] VERSION="7 (Core)"
[2025-11-29 16:05:58] ID="centos"
[2025-11-29 16:05:58] ID_LIKE="rhel fedora"
[2025-11-29 16:05:58] VERSION_ID="7"
[2025-11-29 16:05:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 16:05:58] ANSI_COLOR="0;31"
[2025-11-29 16:05:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 16:05:58] HOME_URL="https://www.centos.org/"
[2025-11-29 16:05:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 16:05:58] 
[2025-11-29 16:05:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 16:05:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 16:05:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 16:05:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 16:05:58] 
[2025-11-29 16:05:58] 2025-11-29 15:05:12,864 | INFO     | ***************************************
[2025-11-29 16:05:58] 2025-11-29 15:05:13,368 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-11-29 16:05:58] 2025-11-29 15:05:13,543 | INFO     | sufficient remaining disk space (488350154752 B)
[2025-11-29 16:05:58] 2025-11-29 15:05:13,543 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 16:05:58] 2025-11-29 15:05:13,544 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 16:05:58] 2025-11-29 15:05:13,544 | INFO     | update_server=False
[2025-11-29 16:05:58] 2025-11-29 15:05:13,544 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 16:05:58] 2025-11-29 15:05:13,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 16:05:58] 2025-11-29 15:05:13,544 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:05:58] 2025-11-29 15:05:13,544 | INFO     | aborting loop
[2025-11-29 16:05:58] 2025-11-29 15:05:13,975 | INFO     | all data control threads have been joined
[2025-11-29 16:05:58] 2025-11-29 15:05:14,117 | INFO     | all job control threads have been joined
[2025-11-29 16:05:58] 2025-11-29 15:05:14,461 | INFO     | all payload control threads have been joined
[2025-11-29 16:05:58] 2025-11-29 15:05:14,477 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 16:05:58] 2025-11-29 15:05:14,550 | INFO     | [job] retrieve thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:14,550 | INFO     | [job] job monitor thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:14,981 | INFO     | [data] control thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,017 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,123 | INFO     | [job] control thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:05:58] 2025-11-29 15:05:15,150 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,398 | INFO     | [payload] validate_post thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,463 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,467 | INFO     | [payload] control thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,486 | INFO     | [data] copytool_in thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,551 | INFO     | [data] copytool_out thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:15,967 | INFO     | [payload] failed_post thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:16,040 | INFO     | [job] validate thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:16,133 | INFO     | [job] queue monitor thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:18,487 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 16:05:58] 2025-11-29 15:05:43,677 | INFO     | PID=6172 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-29 16:05:58] 2025-11-29 15:05:43,677 | INFO     | .. there are 9 such processes running
[2025-11-29 16:05:58] 2025-11-29 15:05:43,677 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 16:05:58] 2025-11-29 15:05:43,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 16:05:58] 2025-11-29 15:05:43,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 16:05:58] 2025-11-29 15:05:47,063 | INFO     | [monitor] cgroup control has ended
[2025-11-29 16:05:58] 2025-11-29 15:05:48,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742305691456)>', '<ExcThread(monitor, started 139741576025856)>']
[2025-11-29 16:05:58] 2025-11-29 15:05:48,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 16:05:58] 2025-11-29 15:05:48,706 | INFO     | [monitor] control thread has ended
[2025-11-29 16:05:58] 2025-11-29 15:05:53,639 | INFO     | all workflow threads have been joined
[2025-11-29 16:05:58] 2025-11-29 15:05:53,639 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 16:05:58] 2025-11-29 15:05:53,639 | INFO     | traces error code: 0
[2025-11-29 16:05:58] 2025-11-29 15:05:53,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 16:05:58] 2025-11-29 15:05:54,009 [wrapper] ==== pilot stdout END ====
[2025-11-29 16:05:58] 2025-11-29 15:05:54,091 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 16:05:58] 2025-11-29 15:05:54,207 [wrapper] pilotpid: 6172
[2025-11-29 16:05:58] 2025-11-29 15:05:54,268 [wrapper] Pilot exit status: 0
[2025-11-29 16:05:58] 2025-11-29 15:05:54,637 [wrapper] pandaids: 6897487274
[2025-11-29 16:05:58] 2025-11-29 15:05:55,817 [wrapper] cleanup supervisor_pilot 21510 6173
[2025-11-29 16:05:58] 2025-11-29 15:05:55,885 [wrapper] Test setup, not cleaning
[2025-11-29 16:05:58] 2025-11-29 15:05:55,991 [wrapper] apfmon messages muted
[2025-11-29 16:05:58] 2025-11-29 15:05:56,118 [wrapper] ==== wrapper stdout END ====
[2025-11-29 16:05:58] 2025-11-29 15:05:56,191 [wrapper] ==== wrapper stderr END ====
[2025-11-29 16:05:58]  *** Error codes and diagnostics ***
[2025-11-29 16:05:58]     "exeErrorCode": 0,
[2025-11-29 16:05:58]     "exeErrorDiag": "",
[2025-11-29 16:05:58]     "pilotErrorCode": 0,
[2025-11-29 16:05:58]     "pilotErrorDiag": "",
[2025-11-29 16:05:58]  *** Listing of results directory ***
[2025-11-29 16:05:58] total 1324840
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc      5112 Nov 25 17:55 queuedata.json
[2025-11-29 16:05:58] -rwx------. 1 boinc boinc     36292 Nov 25 17:57 runpilot2-wrapper.sh
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc       100 Nov 28 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 16:05:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 16:21 run_atlas
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc       105 Nov 28 16:21 job.xml
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc      6394 Nov 28 16:21 init_data.xml
[2025-11-29 16:05:58] -rw-r--r--. 2 boinc boinc 408704373 Nov 28 16:21 EVNT.47483658._002249.pool.root.1
[2025-11-29 16:05:58] -rw-r--r--. 2 boinc boinc     15847 Nov 28 16:21 start_atlas.sh
[2025-11-29 16:05:58] drwxrwx--x. 2 boinc boinc        68 Nov 28 16:21 shared
[2025-11-29 16:05:58] -rw-r--r--. 2 boinc boinc    590104 Nov 28 16:21 input.tar.gz
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc         0 Nov 28 16:21 boinc_lockfile
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc      2786 Nov 28 16:21 pandaJob.out
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc    991856 Nov 28 16:25 agis_schedconf.cvmfs.json
[2025-11-29 16:05:58] drwx------. 5 boinc boinc      4096 Nov 28 16:25 pilot3
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc       533 Nov 29 15:39 boinc_task_state.xml
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc 916333007 Nov 29 16:02 HITS.47556161._002329.pool.root.1
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc      1033 Nov 29 16:03 memory_monitor_summary.json
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc   1516240 Nov 29 16:03 agis_ddmendpoints.agis.ALL.json
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc   2465764 Nov 29 16:03 log.47556161._002329.job.log.tgz.1
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc        95 Nov 29 16:05 pilot_heartbeat.json
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc      8630 Nov 29 16:05 heartbeat.json
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc        29 Nov 29 16:05 wrapper_checkpoint.txt
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc      8192 Nov 29 16:05 boinc_mmap_file
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc      4884 Nov 29 16:05 pilotlog.txt
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc  11379110 Nov 29 16:05 log.47556161._002329.job.log.1
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc       353 Nov 29 16:05 output.list
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc       620 Nov 29 16:05 runtime_log
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc  13864960 Nov 29 16:05 result.tar.gz
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc      8833 Nov 29 16:05 runtime_log.err
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc       662 Nov 29 16:05 QZ4LDmGXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlbJKDmJHr1Xn.diag
[2025-11-29 16:05:58] -rw-r--r--. 1 boinc boinc     21439 Nov 29 16:05 stderr.txt
[2025-11-29 16:05:58] HITS file was successfully produced:
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc 916333007 Nov 29 16:02 shared/HITS.pool.root.1
[2025-11-29 16:05:58]  *** Contents of shared directory: ***
[2025-11-29 16:05:58] total 1308124
[2025-11-29 16:05:58] -rw-r--r--. 2 boinc boinc 408704373 Nov 28 16:21 ATLAS.root_0
[2025-11-29 16:05:58] -rw-r--r--. 2 boinc boinc     15847 Nov 28 16:21 start_atlas.sh
[2025-11-29 16:05:58] -rw-r--r--. 2 boinc boinc    590104 Nov 28 16:21 input.tar.gz
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc 916333007 Nov 29 16:02 HITS.pool.root.1
[2025-11-29 16:05:58] -rw-------. 1 boinc boinc  13864960 Nov 29 16:05 result.tar.gz
16:06:00 (2365): run_atlas exited; CPU time 315308.333652
16:06:00 (2365): called boinc_finish(0)

</stderr_txt>
]]>

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