Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:44:41 (2216008): wrapper (7.7.26015): starting
17:44:41 (2216008): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:44:41] Arguments: --nthreads 8
[2025-11-26 17:44:41] Threads: 8
[2025-11-26 17:44:41] Checking for CVMFS
[2025-11-26 17:44:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:44:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:44:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:44:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:44:42] 2.13.3.0 12460 30666 365968 153337 2 1214 27192511 32935936 55253 16776704 0 316921836 99.642 294605078 36963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:44:42] CVMFS is ok
[2025-11-26 17:44:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:44:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:44:42] Further information can be found at the LHC@home message board.
[2025-11-26 17:44:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:44:42] Checking for apptainer binary...
[2025-11-26 17:44:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:44:42] Running /usr/bin/apptainer --version
[2025-11-26 17:44:42] apptainer version 1.4.4-1.el9
[2025-11-26 17:44:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:44:42] c7-6-31.aglt2.org
[2025-11-26 17:44:42] apptainer works
[2025-11-26 17:44:42] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:44:42] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:44:42] Starting ATLAS job with PandaID=6897487272
[2025-11-26 17:44:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:20:04 (2216008): BOINC client no longer exists - exiting
23:20:04 (2216008): timer handler: client dead, exiting
23:21:23 (1633920): wrapper (7.7.26015): starting
23:21:23 (1633920): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 23:21:23] Arguments: --nthreads 11
[2025-11-26 23:21:23] Threads: 11
[2025-11-26 23:21:23] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:21:23] Checking for CVMFS
[2025-11-26 23:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:21:23] 2.13.3.0 12460 31002 334584 153347 2 385 26515591 32935936 54672 16776704 0 323441942 99.643 298805760 36890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:21:23] CVMFS is ok
[2025-11-26 23:21:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:21:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:21:23] Further information can be found at the LHC@home message board.
[2025-11-26 23:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:21:23] Checking for apptainer binary...
[2025-11-26 23:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:21:23] Running /usr/bin/apptainer --version
[2025-11-26 23:21:23] apptainer version 1.4.4-1.el9
[2025-11-26 23:21:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:21:23] c7-6-31.aglt2.org
[2025-11-26 23:21:23] apptainer works
[2025-11-26 23:21:23] Set ATHENA_PROC_NUMBER=11
[2025-11-26 23:21:23] Set ATHENA_CORE_NUMBER=11
[2025-11-26 23:21:23] Starting ATLAS job with PandaID=6897487272
[2025-11-26 23:21:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:09:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:09:05] 2025-11-27 17:08:20,744 | INFO     | time since job start (46005s) is within the limit (172800.0s)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,094 | INFO     | monitor loop #2283: job 0:6897487272 is in state 'finished'
[2025-11-27 12:09:05] 2025-11-27 17:08:22,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,277 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:09:05] 2025-11-27 17:08:22,289 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3394.4495416666655
[2025-11-27 12:09:05] 2025-11-27 17:08:22,301 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6897487272/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,302 | INFO     | extracted standard info from prmon json
[2025-11-27 12:09:05] 2025-11-27 17:08:22,302 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:09:05] 2025-11-27 17:08:22,302 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:09:05] 2025-11-27 17:08:22,310 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:09:05] 2025-11-27 17:08:22,311 | INFO     | sum of square deviations: 132916852096.94429
[2025-11-27 12:09:05] 2025-11-27 17:08:22,321 | INFO     | sum of deviations: 1108276198071.967
[2025-11-27 12:09:05] 2025-11-27 17:08:22,321 | INFO     | mean x: 1764240291.0636604
[2025-11-27 12:09:05] 2025-11-27 17:08:22,321 | INFO     | mean y: 3445957.75066313
[2025-11-27 12:09:05] 2025-11-27 17:08:22,321 | INFO     | intersect: -14706995129.428568
[2025-11-27 12:09:05] 2025-11-27 17:08:22,322 | INFO     | chi2: 6.421768274930975
[2025-11-27 12:09:05] 2025-11-27 17:08:22,322 | INFO     | sum of square deviations: 130290399637.13774
[2025-11-27 12:09:05] 2025-11-27 17:08:22,332 | INFO     | sum of deviations: 1434895775839.6296
[2025-11-27 12:09:05] 2025-11-27 17:08:22,332 | INFO     | mean x: 1764240138.5740988
[2025-11-27 12:09:05] 2025-11-27 17:08:22,332 | INFO     | mean y: 3464925.0427236315
[2025-11-27 12:09:05] 2025-11-27 17:08:22,332 | INFO     | intersect: -19426214694.154045
[2025-11-27 12:09:05] 2025-11-27 17:08:22,333 | INFO     | chi2: 2.842457548278969
[2025-11-27 12:09:05] 2025-11-27 17:08:22,333 | INFO     | current chi2=2.842457548278969 (change=55.73715172228756 %)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,334 | INFO     | sum of square deviations: 127698694031.99892
[2025-11-27 12:09:05] 2025-11-27 17:08:22,343 | INFO     | sum of deviations: 1518978338009.3135
[2025-11-27 12:09:05] 2025-11-27 17:08:22,343 | INFO     | mean x: 1764239986.0819893
[2025-11-27 12:09:05] 2025-11-27 17:08:22,343 | INFO     | mean y: 3469856.8965053763
[2025-11-27 12:09:05] 2025-11-27 17:08:22,343 | INFO     | intersect: -20982197555.151386
[2025-11-27 12:09:05] 2025-11-27 17:08:22,344 | INFO     | chi2: 2.3513025541423844
[2025-11-27 12:09:05] 2025-11-27 17:08:22,344 | INFO     | current chi2=2.3513025541423844 (change=17.279237624286264 %)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,344 | INFO     | right removable region: 743
[2025-11-27 12:09:05] 2025-11-27 17:08:22,345 | INFO     | sum of square deviations: 130289772073.42865
[2025-11-27 12:09:05] 2025-11-27 17:08:22,354 | INFO     | sum of deviations: 879033950983.4281
[2025-11-27 12:09:05] 2025-11-27 17:08:22,354 | INFO     | mean x: 1764240443.5714285
[2025-11-27 12:09:05] 2025-11-27 17:08:22,355 | INFO     | mean y: 3459241.748998665
[2025-11-27 12:09:05] 2025-11-27 17:08:22,355 | INFO     | intersect: -11899449351.285717
[2025-11-27 12:09:05] 2025-11-27 17:08:22,355 | INFO     | chi2: 4.454808028510019
[2025-11-27 12:09:05] 2025-11-27 17:08:22,355 | INFO     | current chi2=4.454808028510019 (change=30.62957369700634 %)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,356 | INFO     | sum of square deviations: 127697667351.78516
[2025-11-27 12:09:05] 2025-11-27 17:08:22,365 | INFO     | sum of deviations: 791266403868.7849
[2025-11-27 12:09:05] 2025-11-27 17:08:22,365 | INFO     | mean x: 1764240596.0752687
[2025-11-27 12:09:05] 2025-11-27 17:08:22,365 | INFO     | mean y: 3464403.700268817
[2025-11-27 12:09:05] 2025-11-27 17:08:22,366 | INFO     | intersect: -10928484009.813833
[2025-11-27 12:09:05] 2025-11-27 17:08:22,366 | INFO     | chi2: 4.294593247326062
[2025-11-27 12:09:05] 2025-11-27 17:08:22,366 | INFO     | current chi2=4.294593247326062 (change=3.596446359946598 %)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,366 | INFO     | left removable region: 20
[2025-11-27 12:09:05] 2025-11-27 17:08:22,367 | INFO     | sum of square deviations: 117186942523.07323
[2025-11-27 12:09:05] 2025-11-27 17:08:22,376 | INFO     | sum of deviations: 1080463574018.5769
[2025-11-27 12:09:05] 2025-11-27 17:08:22,376 | INFO     | mean x: 1764240565.6030428
[2025-11-27 12:09:05] 2025-11-27 17:08:22,376 | INFO     | mean y: 3495811.7372060856
[2025-11-27 12:09:05] 2025-11-27 17:08:22,376 | INFO     | intersect: -16262801660.48077
[2025-11-27 12:09:05] 2025-11-27 17:08:22,377 | INFO     | chi2: 0.11021963297361606
[2025-11-27 12:09:05] 2025-11-27 17:08:22,377 | INFO     | current memory leak: 9.22 B/s (using 723 data points, chi2=0.11)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | could have reported an average CPU frequency of 3404 MHz (29 samples)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | ..............................
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | . Timing measurements:
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | . get job = 0 s
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | . initial setup = 2 s
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | . payload setup = 6 s
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | . stage-in = 0 s
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | . payload execution = 45971 s
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | . stage-out = 3 s
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | . log creation = 0 s
[2025-11-27 12:09:05] 2025-11-27 17:08:22,378 | INFO     | ..............................
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | 
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | job summary report
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | --------------------------------------------------
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | PanDA job id: 6897487272
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | task id: 47556161
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | errors: (none)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | pilot state: finished 
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | transexitcode: 0
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | exeerrorcode: 0
[2025-11-27 12:09:05] 2025-11-27 17:08:22,447 | INFO     | exeerrordiag: 
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | exitcode: 0
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | exitmsg: OK
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | cpuconsumptiontime: 184661 s
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | nevents: 1000
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | neventsw: 0
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | pid: 1710147
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | pgrp: 1710147
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | corecount: 11
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | event service: False
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | sizes: {0: 2284265, 1: 2284265, 5: 2284555, 11: 2284611, 45981: 2330376, 45985: 2339554, 45991: 2339744}
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | --------------------------------------------------
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | 
[2025-11-27 12:09:05] 2025-11-27 17:08:22,448 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | job 6897487272 has completed (purged errors)
[2025-11-27 12:09:05] 2025-11-27 17:08:22,471 | INFO     | overall cleanup function is called
[2025-11-27 12:09:05] 2025-11-27 17:08:23,491 | INFO     | --- collectZombieJob: --- 10, [1710147]
[2025-11-27 12:09:05] 2025-11-27 17:08:23,491 | INFO     | zombie collector waiting for pid 1710147
[2025-11-27 12:09:05] 2025-11-27 17:08:23,491 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:09:05] 2025-11-27 17:08:23,492 | INFO     | collected zombie processes
[2025-11-27 12:09:05] 2025-11-27 17:08:23,492 | INFO     | will attempt to kill all subprocesses of pid=1710147
[2025-11-27 12:09:05] 2025-11-27 17:08:24,215 | INFO     | process IDs to be killed: [1710147] (in reverse order)
[2025-11-27 12:09:05] 2025-11-27 17:08:24,474 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:09:05] 2025-11-27 17:08:24,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:09:05] 2025-11-27 17:08:24,507 | INFO     | did not find any defunct processes belonging to 1710147
[2025-11-27 12:09:05] 2025-11-27 17:08:24,539 | INFO     | did not find any defunct processes belonging to 1710147
[2025-11-27 12:09:05] 2025-11-27 17:08:24,540 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:09:05] 2025-11-27 17:08:24,540 | INFO     | ready for new job
[2025-11-27 12:09:05] 2025-11-27 17:08:24,541 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:09:05] 2025-11-27 17:08:24,543 | INFO     | ***************************************
[2025-11-27 12:09:05] 2025-11-27 17:08:24,544 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:09:05] 2025-11-27 17:08:24,544 | INFO     | ***************************************
[2025-11-27 12:09:05] 2025-11-27 17:08:24,544 | INFO     | 
[2025-11-27 12:09:05] 2025-11-27 17:08:24,548 | INFO     | architecture information:
[2025-11-27 12:09:05] 2025-11-27 17:08:24,549 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:09:05] 2025-11-27 17:08:24,571 | INFO     | cat /etc/os-release:
[2025-11-27 12:09:05] NAME="CentOS Linux"
[2025-11-27 12:09:05] VERSION="7 (Core)"
[2025-11-27 12:09:05] ID="centos"
[2025-11-27 12:09:05] ID_LIKE="rhel fedora"
[2025-11-27 12:09:05] VERSION_ID="7"
[2025-11-27 12:09:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:09:05] ANSI_COLOR="0;31"
[2025-11-27 12:09:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:09:05] HOME_URL="https://www.centos.org/"
[2025-11-27 12:09:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:09:05] 
[2025-11-27 12:09:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:09:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:09:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:09:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:09:05] 
[2025-11-27 12:09:05] 2025-11-27 17:08:24,572 | INFO     | ***************************************
[2025-11-27 12:09:05] 2025-11-27 17:08:25,075 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 12:09:05] 2025-11-27 17:08:25,091 | INFO     | sufficient remaining disk space (68138565632 B)
[2025-11-27 12:09:05] 2025-11-27 17:08:25,091 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:09:05] 2025-11-27 17:08:25,092 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:09:05] 2025-11-27 17:08:25,092 | INFO     | update_server=False
[2025-11-27 12:09:05] 2025-11-27 17:08:25,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:09:05] 2025-11-27 17:08:25,195 | INFO     | all payload control threads have been joined
[2025-11-27 12:09:05] 2025-11-27 17:08:25,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:09:05] 2025-11-27 17:08:25,606 | INFO     | aborting loop
[2025-11-27 12:09:05] 2025-11-27 17:08:25,906 | INFO     | all job control threads have been joined
[2025-11-27 12:09:05] 2025-11-27 17:08:25,986 | INFO     | all data control threads have been joined
[2025-11-27 12:09:05] 2025-11-27 17:08:26,097 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:26,200 | INFO     | [payload] control thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:26,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:09:05] 2025-11-27 17:08:26,494 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:26,612 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:26,634 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:26,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:09:05] 2025-11-27 17:08:26,825 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:26,909 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:26,911 | INFO     | [job] control thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:26,991 | INFO     | [data] control thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:27,243 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:27,263 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:27,310 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:27,405 | INFO     | [job] validate thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:27,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:09:05] 2025-11-27 17:08:28,301 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:28,474 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:30,701 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:09:05] 2025-11-27 17:08:54,831 | INFO     | PID=1656870 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 12:09:05] 2025-11-27 17:08:54,832 | INFO     | .. there are 89 such processes running
[2025-11-27 12:09:05] 2025-11-27 17:08:54,836 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:09:05] 2025-11-27 17:08:54,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:09:05] 2025-11-27 17:08:54,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:09:05] 2025-11-27 17:08:59,537 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:09:05] 2025-11-27 17:08:59,868 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140709234988864)>', '<ExcThread(monitor, started 140708740581120)>']
[2025-11-27 12:09:05] 2025-11-27 17:09:00,873 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:09:05] 2025-11-27 17:09:00,873 | INFO     | [monitor] control thread has ended
[2025-11-27 12:09:05] 2025-11-27 17:09:04,894 | INFO     | all workflow threads have been joined
[2025-11-27 12:09:05] 2025-11-27 17:09:04,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:09:05] 2025-11-27 17:09:04,895 | INFO     | traces error code: 0
[2025-11-27 12:09:05] 2025-11-27 17:09:04,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:09:05] 2025-11-27 17:09:05,026 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:09:05] 2025-11-27 17:09:05,029 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:09:05] 2025-11-27 17:09:05,031 [wrapper] pilotpid: 1656870
[2025-11-27 12:09:05] 2025-11-27 17:09:05,033 [wrapper] Pilot exit status: 0
[2025-11-27 12:09:05] 2025-11-27 17:09:05,053 [wrapper] pandaids: 6897487272 6897487272
[2025-11-27 12:09:05] 2025-11-27 17:09:05,230 [wrapper] cleanup supervisor_pilot  972402 1656872
[2025-11-27 12:09:05] 2025-11-27 17:09:05,232 [wrapper] Test setup, not cleaning
[2025-11-27 12:09:05] 2025-11-27 17:09:05,235 [wrapper] apfmon messages muted
[2025-11-27 12:09:05] 2025-11-27 17:09:05,237 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:09:05] 2025-11-27 17:09:05,239 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:09:05]  *** Error codes and diagnostics ***
[2025-11-27 12:09:05]     "exeErrorCode": 0,
[2025-11-27 12:09:05]     "exeErrorDiag": "",
[2025-11-27 12:09:05]     "pilotErrorCode": 0,
[2025-11-27 12:09:05]     "pilotErrorDiag": "",
[2025-11-27 12:09:05]  *** Listing of results directory ***
[2025-11-27 12:09:05] total 1721140
[2025-11-27 12:09:05] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 12:09:05] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:09:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:44 run_atlas
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:44 job.xml
[2025-11-27 12:09:05] -rw-r--r--. 3 boincer umatlas 408704373 Nov 26 17:44 EVNT.47483658._002249.pool.root.1
[2025-11-27 12:09:05] -rw-r--r--. 3 boincer umatlas 408704373 Nov 26 17:44 ATLAS.root_0
[2025-11-27 12:09:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:44 start_atlas.sh
[2025-11-27 12:09:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:44 shared
[2025-11-27 12:09:05] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 17:44 input.tar.gz
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:44 boinc_lockfile
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 23:21 pandaJob.out
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas        57 Nov 26 23:21 setup.sh.local
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas    991570 Nov 26 23:21 agis_schedconf.cvmfs.json
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas       533 Nov 27 11:59 boinc_task_state.xml
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 12:03 init_data.xml
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas 926080984 Nov 27 12:07 HITS.47556161._002327.pool.root.1
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas      1071 Nov 27 12:08 memory_monitor_summary.json
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas   2245554 Nov 27 12:08 log.47556161._002327.job.log.tgz.1
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas      8631 Nov 27 12:08 heartbeat.json
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:08 boinc_mmap_file
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:08 wrapper_checkpoint.txt
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas        96 Nov 27 12:08 pilot_heartbeat.json
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas      4825 Nov 27 12:09 pilotlog.txt
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas   5266843 Nov 27 12:09 log.47556161._002327.job.log.1
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas       353 Nov 27 12:09 output.list
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:09 runtime_log
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas   7536640 Nov 27 12:09 result.tar.gz
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas      9425 Nov 27 12:09 runtime_log.err
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas       789 Nov 27 12:09 fu1LDmGXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjbJKDmdygPMo.diag
[2025-11-27 12:09:05] -rw-r--r--. 1 boincer umatlas     23620 Nov 27 12:09 stderr.txt
[2025-11-27 12:09:05] HITS file was successfully produced:
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas 926080984 Nov 27 12:07 shared/HITS.pool.root.1
[2025-11-27 12:09:05]  *** Contents of shared directory: ***
[2025-11-27 12:09:05] total 1311468
[2025-11-27 12:09:05] -rw-r--r--. 3 boincer umatlas 408704373 Nov 26 17:44 ATLAS.root_0
[2025-11-27 12:09:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:44 start_atlas.sh
[2025-11-27 12:09:05] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 17:44 input.tar.gz
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas 926080984 Nov 27 12:07 HITS.pool.root.1
[2025-11-27 12:09:05] -rw-------. 1 boincer umatlas   7536640 Nov 27 12:09 result.tar.gz
12:09:06 (1633920): run_atlas exited; CPU time 185723.324741
12:09:06 (1633920): called boinc_finish(0)

</stderr_txt>
]]>

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