Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:11:16 (473004): wrapper (7.7.26015): starting
18:11:16 (473004): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 18:11:16] Arguments: --nthreads 3
[2025-11-26 18:11:16] Threads: 3
[2025-11-26 18:11:16] Checking for CVMFS
[2025-11-26 18:11:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:11:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:11:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:11:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:11:16] 2.9.2.0 368311 22 55712 153329 1 88 35712319 36864000 0 130560 0 313069 99.998 1376 7602 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 18:11:16] CVMFS is ok
[2025-11-26 18:11:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:11:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:11:16] Further information can be found at the LHC@home message board.
[2025-11-26 18:11:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:11:16] Checking for apptainer binary...
[2025-11-26 18:11:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:11:16] Running /usr/bin/apptainer --version
[2025-11-26 18:11:16] apptainer version 1.4.1-1.1
[2025-11-26 18:11:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:11:16] thA335
[2025-11-26 18:11:16] apptainer works
[2025-11-26 18:11:16] Set ATHENA_PROC_NUMBER=3
[2025-11-26 18:11:16] Set ATHENA_CORE_NUMBER=3
[2025-11-26 18:11:16] Starting ATLAS job with PandaID=6891605084
[2025-11-26 18:11:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:15:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:15:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:15:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:15:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:15:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:15:33] 
[2025-11-26 18:15:33] 2025-11-26 17:14:41,214 | INFO     | ***************************************
[2025-11-26 18:15:33] 2025-11-26 17:14:41,717 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 18:15:33] 2025-11-26 17:14:41,731 | INFO     | sufficient remaining disk space (827125137408 B)
[2025-11-26 18:15:33] 2025-11-26 17:14:41,732 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:15:33] 2025-11-26 17:14:41,732 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:15:33] 2025-11-26 17:14:41,732 | INFO     | update_server=False
[2025-11-26 18:15:33] 2025-11-26 17:14:41,732 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:15:33] 2025-11-26 17:14:41,732 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:15:33] 2025-11-26 17:14:41,732 | INFO     | aborting loop
[2025-11-26 18:15:33] 2025-11-26 17:14:41,732 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:15:33] 2025-11-26 17:14:41,880 | INFO     | all job control threads have been joined
[2025-11-26 18:15:33] 2025-11-26 17:14:42,638 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:15:33] 2025-11-26 17:14:42,702 | INFO     | all data control threads have been joined
[2025-11-26 18:15:33] 2025-11-26 17:14:42,733 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:42,737 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:42,738 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:42,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:42,886 | INFO     | [job] control thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:42,940 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:43,029 | INFO     | all payload control threads have been joined
[2025-11-26 18:15:33] 2025-11-26 17:14:43,621 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:43,708 | INFO     | [data] control thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:43,753 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:43,991 | INFO     | [job] validate thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:44,035 | INFO     | [payload] control thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:44,068 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:44,079 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:44,130 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:44,644 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:14:44,668 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:15:33] 2025-11-26 17:14:48,675 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:15:33] 2025-11-26 17:15:12,223 | INFO     | PID=476737 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 18:15:33] 2025-11-26 17:15:12,223 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:15:33] 2025-11-26 17:15:12,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:15:33] 2025-11-26 17:15:12,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:15:33] 2025-11-26 17:15:27,273 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:15:33] 2025-11-26 17:15:28,454 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698721015616)>', '<ExcThread(monitor, started 139698206914304)>']
[2025-11-26 18:15:33] 2025-11-26 17:15:29,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:15:33] 2025-11-26 17:15:29,314 | INFO     | [monitor] control thread has ended
[2025-11-26 18:15:33] 2025-11-26 17:15:33,480 | INFO     | all workflow threads have been joined
[2025-11-26 18:15:33] 2025-11-26 17:15:33,480 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:15:33] 2025-11-26 17:15:33,481 | INFO     | traces error code: 0
[2025-11-26 18:15:33] 2025-11-26 17:15:33,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:15:33] 2025-11-26 17:15:33,531 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:15:33] 2025-11-26 17:15:33,534 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:15:33] 2025-11-26 17:15:33,536 [wrapper] pilotpid: 476737
[2025-11-26 18:15:33] 2025-11-26 17:15:33,539 [wrapper] Pilot exit status: 0
[2025-11-26 18:15:33] 2025-11-26 17:15:33,547 [wrapper] pandaids: 6891605084
[2025-11-26 18:15:33] 2025-11-26 17:15:33,563 [wrapper] cleanup supervisor_pilot  476743 476738
[2025-11-26 18:15:33] 2025-11-26 17:15:33,566 [wrapper] Test setup, not cleaning
[2025-11-26 18:15:33] 2025-11-26 17:15:33,569 [wrapper] apfmon messages muted
[2025-11-26 18:15:33] 2025-11-26 17:15:33,572 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:15:33] 2025-11-26 17:15:33,574 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:15:33]  *** Error codes and diagnostics ***
[2025-11-26 18:15:33]     "exeErrorCode": 65,
[2025-11-26 18:15:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 18:15:33]     "pilotErrorCode": 1305,
[2025-11-26 18:15:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 18:15:33]  *** Listing of results directory ***
[2025-11-26 18:15:33] total 401536
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc    576529 Nov 18 20:37 pilot3.tar.gz
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc      5112 Nov 18 20:40 queuedata.json
[2025-11-26 18:15:33] -rwx------ 1 boinc boinc     36292 Nov 18 20:41 runpilot2-wrapper.sh
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc       100 Nov 26 18:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:15:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 18:11 run_atlas
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc       105 Nov 26 18:11 job.xml
[2025-11-26 18:15:33] -rw-r--r-- 2 boinc boinc 406981150 Nov 26 18:11 EVNT.47493065._000966.pool.root.1
[2025-11-26 18:15:33] -rw-r--r-- 2 boinc boinc    590092 Nov 26 18:11 input.tar.gz
[2025-11-26 18:15:33] -rw-r--r-- 2 boinc boinc     15120 Nov 26 18:11 start_atlas.sh
[2025-11-26 18:15:33] drwxrwx--x 2 boinc boinc      4096 Nov 26 18:11 shared
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc         0 Nov 26 18:11 boinc_setup_complete
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc      6196 Nov 26 18:11 init_data.xml
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc         0 Nov 26 18:11 boinc_lockfile
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc      2773 Nov 26 18:11 pandaJob.out
[2025-11-26 18:15:33] -rw------- 1 boinc boinc    991545 Nov 26 18:11 agis_schedconf.cvmfs.json
[2025-11-26 18:15:33] -rw------- 1 boinc boinc   1516240 Nov 26 18:11 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:15:33] drwx------ 5 boinc boinc      4096 Nov 26 18:11 pilot3
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc       522 Nov 26 18:12 boinc_task_state.xml
[2025-11-26 18:15:33] -rw------- 1 boinc boinc       956 Nov 26 18:12 memory_monitor_summary.json
[2025-11-26 18:15:33] -rw------- 1 boinc boinc     55477 Nov 26 18:12 log.47493068._007552.job.log.tgz.1
[2025-11-26 18:15:33] -rw------- 1 boinc boinc        95 Nov 26 18:14 pilot_heartbeat.json
[2025-11-26 18:15:33] -rw------- 1 boinc boinc      8399 Nov 26 18:14 heartbeat.json
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc        22 Nov 26 18:15 wrapper_checkpoint.txt
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc      8192 Nov 26 18:15 boinc_mmap_file
[2025-11-26 18:15:33] -rw------- 1 boinc boinc      4751 Nov 26 18:15 pilotlog.txt
[2025-11-26 18:15:33] -rw------- 1 boinc boinc     93074 Nov 26 18:15 log.47493068._007552.job.log.1
[2025-11-26 18:15:33] -rw------- 1 boinc boinc       186 Nov 26 18:15 output.list
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc       620 Nov 26 18:15 runtime_log
[2025-11-26 18:15:33] -rw------- 1 boinc boinc    163840 Nov 26 18:15 result.tar.gz
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc      8624 Nov 26 18:15 runtime_log.err
[2025-11-26 18:15:33] -rw------- 1 boinc boinc       649 Nov 26 18:15 b9OKDmqkgf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVXGKDmIvfsSm.diag
[2025-11-26 18:15:33] -rw-r--r-- 1 boinc boinc      8577 Nov 26 18:15 stderr.txt
[2025-11-26 18:15:33] No HITS result produced
[2025-11-26 18:15:33]  *** Contents of shared directory: ***
[2025-11-26 18:15:33] total 398204
[2025-11-26 18:15:33] -rw-r--r-- 2 boinc boinc 406981150 Nov 26 18:11 ATLAS.root_0
[2025-11-26 18:15:33] -rw-r--r-- 2 boinc boinc    590092 Nov 26 18:11 input.tar.gz
[2025-11-26 18:15:33] -rw-r--r-- 2 boinc boinc     15120 Nov 26 18:11 start_atlas.sh
[2025-11-26 18:15:33] -rw------- 1 boinc boinc    163840 Nov 26 18:15 result.tar.gz
18:15:34 (473004): run_atlas exited; CPU time 31.503663
18:15:34 (473004): called boinc_finish(0)

</stderr_txt>
]]>

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