Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:12:07 (256208): wrapper (7.7.26015): starting
14:12:07 (256208): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 14:12:07] Arguments: --nthreads 8
[2025-11-26 14:12:07] Threads: 8
[2025-11-26 14:12:07] Checking for CVMFS
[2025-11-26 14:12:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:12:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:12:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:12:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:12:09] 2.13.3.0 11334 30454 345196 153332 2 507 29643012 32935937 30220 16776704 0 132616713 99.503 178104156 40881 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:12:09] CVMFS is ok
[2025-11-26 14:12:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:12:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:12:09] Further information can be found at the LHC@home message board.
[2025-11-26 14:12:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:12:09] Checking for apptainer binary...
[2025-11-26 14:12:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:12:09] Running /usr/bin/apptainer --version
[2025-11-26 14:12:09] apptainer version 1.4.4-1.el9
[2025-11-26 14:12:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:12:09] c6-4-5-2.aglt2.org
[2025-11-26 14:12:09] apptainer works
[2025-11-26 14:12:09] Set ATHENA_PROC_NUMBER=8
[2025-11-26 14:12:09] Set ATHENA_CORE_NUMBER=8
[2025-11-26 14:12:09] Starting ATLAS job with PandaID=6896713838
[2025-11-26 14:12:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:12:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:12:01] 2025-11-27 07:11:07,972 | INFO     | time since job start (43111s) is within the limit (172800.0s)
[2025-11-27 02:12:01] 2025-11-27 07:11:08,235 | INFO     | monitor loop #2574: job 0:6896713838 is in state 'finished'
[2025-11-27 02:12:01] 2025-11-27 07:11:08,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,108 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:12:01] 2025-11-27 07:11:09,144 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3098.5119531249998
[2025-11-27 02:12:01] 2025-11-27 07:11:09,230 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896713838/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,231 | INFO     | extracted standard info from prmon json
[2025-11-27 02:12:01] 2025-11-27 07:11:09,231 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:12:01] 2025-11-27 07:11:09,231 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:12:01] 2025-11-27 07:11:09,273 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:12:01] 2025-11-27 07:11:09,274 | INFO     | sum of square deviations: 109114011295.20634
[2025-11-27 02:12:01] 2025-11-27 07:11:09,283 | INFO     | sum of deviations: 1046835081400.1436
[2025-11-27 02:12:01] 2025-11-27 07:11:09,288 | INFO     | mean x: 1764205927.6147308
[2025-11-27 02:12:01] 2025-11-27 07:11:09,288 | INFO     | mean y: 2906424.3130311617
[2025-11-27 02:12:01] 2025-11-27 07:11:09,288 | INFO     | intersect: -16922808558.748163
[2025-11-27 02:12:01] 2025-11-27 07:11:09,289 | INFO     | chi2: 8.295806922169676
[2025-11-27 02:12:01] 2025-11-27 07:11:09,290 | INFO     | sum of square deviations: 106812497895.18694
[2025-11-27 02:12:01] 2025-11-27 07:11:09,344 | INFO     | sum of deviations: 1295736215224.4863
[2025-11-27 02:12:01] 2025-11-27 07:11:09,344 | INFO     | mean x: 1764205775.1298146
[2025-11-27 02:12:01] 2025-11-27 07:11:09,344 | INFO     | mean y: 2922915.8188302424
[2025-11-27 02:12:01] 2025-11-27 07:11:09,345 | INFO     | intersect: -21398554991.6358
[2025-11-27 02:12:01] 2025-11-27 07:11:09,345 | INFO     | chi2: 4.9038666765899315
[2025-11-27 02:12:01] 2025-11-27 07:11:09,345 | INFO     | current chi2=4.9038666765899315 (change=40.88740585940036 %)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,346 | INFO     | sum of square deviations: 104543547243.63208
[2025-11-27 02:12:01] 2025-11-27 07:11:09,395 | INFO     | sum of deviations: 1408292939570.494
[2025-11-27 02:12:01] 2025-11-27 07:11:09,395 | INFO     | mean x: 1764205622.6436782
[2025-11-27 02:12:01] 2025-11-27 07:11:09,395 | INFO     | mean y: 2930458.760057471
[2025-11-27 02:12:01] 2025-11-27 07:11:09,395 | INFO     | intersect: -23762460976.922215
[2025-11-27 02:12:01] 2025-11-27 07:11:09,418 | INFO     | chi2: 3.7647451303482553
[2025-11-27 02:12:01] 2025-11-27 07:11:09,419 | INFO     | current chi2=3.7647451303482553 (change=23.229048042427667 %)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,419 | INFO     | right removable region: 695
[2025-11-27 02:12:01] 2025-11-27 07:11:09,419 | INFO     | sum of square deviations: 106811587165.1869
[2025-11-27 02:12:01] 2025-11-27 07:11:09,468 | INFO     | sum of deviations: 792949656961.3647
[2025-11-27 02:12:01] 2025-11-27 07:11:09,468 | INFO     | mean x: 1764206080.1298146
[2025-11-27 02:12:01] 2025-11-27 07:11:09,468 | INFO     | mean y: 2923229.3366619116
[2025-11-27 02:12:01] 2025-11-27 07:11:09,469 | INFO     | intersect: -13094219535.56406
[2025-11-27 02:12:01] 2025-11-27 07:11:09,469 | INFO     | chi2: 4.9740407110468405
[2025-11-27 02:12:01] 2025-11-27 07:11:09,469 | INFO     | current chi2=4.9740407110468405 (change=40.041508225628576 %)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,491 | INFO     | sum of square deviations: 104542067517.30537
[2025-11-27 02:12:01] 2025-11-27 07:11:09,535 | INFO     | sum of deviations: 717759449441.376
[2025-11-27 02:12:01] 2025-11-27 07:11:09,535 | INFO     | mean x: 1764206232.6350574
[2025-11-27 02:12:01] 2025-11-27 07:11:09,535 | INFO     | mean y: 2928273.21408046
[2025-11-27 02:12:01] 2025-11-27 07:11:09,535 | INFO     | intersect: -12109666439.221369
[2025-11-27 02:12:01] 2025-11-27 07:11:09,536 | INFO     | chi2: 4.70478475955532
[2025-11-27 02:12:01] 2025-11-27 07:11:09,536 | INFO     | current chi2=4.70478475955532 (change=5.413223717560861 %)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,553 | INFO     | left removable region: 20
[2025-11-27 02:12:01] 2025-11-27 07:11:09,554 | INFO     | sum of square deviations: 95362509294.08286
[2025-11-27 02:12:01] 2025-11-27 07:11:09,592 | INFO     | sum of deviations: 1008342744007.1317
[2025-11-27 02:12:01] 2025-11-27 07:11:09,592 | INFO     | mean x: 1764206202.1674075
[2025-11-27 02:12:01] 2025-11-27 07:11:09,592 | INFO     | mean y: 2957897.0696296296
[2025-11-27 02:12:01] 2025-11-27 07:11:09,592 | INFO     | intersect: -18651380543.22836
[2025-11-27 02:12:01] 2025-11-27 07:11:09,593 | INFO     | chi2: 0.06651041647297357
[2025-11-27 02:12:01] 2025-11-27 07:11:09,593 | INFO     | current memory leak: 10.57 B/s (using 675 data points, chi2=0.07)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,611 | INFO     | could have reported an average CPU frequency of 3168 MHz (27 samples)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,611 | INFO     | ..............................
[2025-11-27 02:12:01] 2025-11-27 07:11:09,611 | INFO     | . Timing measurements:
[2025-11-27 02:12:01] 2025-11-27 07:11:09,611 | INFO     | . get job = 0 s
[2025-11-27 02:12:01] 2025-11-27 07:11:09,611 | INFO     | . initial setup = 4 s
[2025-11-27 02:12:01] 2025-11-27 07:11:09,611 | INFO     | . payload setup = 18 s
[2025-11-27 02:12:01] 2025-11-27 07:11:09,611 | INFO     | . stage-in = 0 s
[2025-11-27 02:12:01] 2025-11-27 07:11:09,611 | INFO     | . payload execution = 43032 s
[2025-11-27 02:12:01] 2025-11-27 07:11:09,612 | INFO     | . stage-out = 7 s
[2025-11-27 02:12:01] 2025-11-27 07:11:09,612 | INFO     | . log creation = 1 s
[2025-11-27 02:12:01] 2025-11-27 07:11:09,612 | INFO     | ..............................
[2025-11-27 02:12:01] 2025-11-27 07:11:09,874 | INFO     | 
[2025-11-27 02:12:01] 2025-11-27 07:11:09,874 | INFO     | job summary report
[2025-11-27 02:12:01] 2025-11-27 07:11:09,874 | INFO     | --------------------------------------------------
[2025-11-27 02:12:01] 2025-11-27 07:11:09,874 | INFO     | PanDA job id: 6896713838
[2025-11-27 02:12:01] 2025-11-27 07:11:09,874 | INFO     | task id: 47556161
[2025-11-27 02:12:01] 2025-11-27 07:11:09,874 | INFO     | errors: (none)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,874 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:12:01] 2025-11-27 07:11:09,874 | INFO     | pilot state: finished 
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | transexitcode: 0
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | exeerrorcode: 0
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | exeerrordiag: 
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | exitcode: 0
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | exitmsg: OK
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | cpuconsumptiontime: 226049 s
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | nevents: 1000
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | neventsw: 0
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | pid: 275944
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | pgrp: 275944
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | corecount: 8
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | event service: False
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | sizes: {0: 2283434, 1: 2284119, 2: 2284318, 13: 2284608, 24: 2284636, 43055: 2329899, 43062: 2338893, 43065: 2338949, 43078: 2339195}
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | --------------------------------------------------
[2025-11-27 02:12:01] 2025-11-27 07:11:09,875 | INFO     | 
[2025-11-27 02:12:01] 2025-11-27 07:11:09,876 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 02:12:01] 2025-11-27 07:11:09,913 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,914 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,915 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,915 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,915 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,915 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:12:01] 2025-11-27 07:11:09,915 | INFO     | job 6896713838 has completed (purged errors)
[2025-11-27 02:12:01] 2025-11-27 07:11:09,915 | INFO     | overall cleanup function is called
[2025-11-27 02:12:01] 2025-11-27 07:11:10,956 | INFO     | --- collectZombieJob: --- 10, [275944]
[2025-11-27 02:12:01] 2025-11-27 07:11:10,956 | INFO     | zombie collector waiting for pid 275944
[2025-11-27 02:12:01] 2025-11-27 07:11:10,956 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:12:01] 2025-11-27 07:11:10,956 | INFO     | collected zombie processes
[2025-11-27 02:12:01] 2025-11-27 07:11:10,956 | INFO     | will attempt to kill all subprocesses of pid=275944
[2025-11-27 02:12:01] 2025-11-27 07:11:11,682 | INFO     | process IDs to be killed: [275944] (in reverse order)
[2025-11-27 02:12:01] 2025-11-27 07:11:11,877 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:12:01] 2025-11-27 07:11:11,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:12:01] 2025-11-27 07:11:11,907 | INFO     | did not find any defunct processes belonging to 275944
[2025-11-27 02:12:01] 2025-11-27 07:11:11,940 | INFO     | did not find any defunct processes belonging to 275944
[2025-11-27 02:12:01] 2025-11-27 07:11:11,949 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:12:01] 2025-11-27 07:11:11,950 | INFO     | ready for new job
[2025-11-27 02:12:01] 2025-11-27 07:11:11,950 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:12:01] 2025-11-27 07:11:11,953 | INFO     | ***************************************
[2025-11-27 02:12:01] 2025-11-27 07:11:11,953 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:12:01] 2025-11-27 07:11:11,958 | INFO     | ***************************************
[2025-11-27 02:12:01] 2025-11-27 07:11:11,958 | INFO     | 
[2025-11-27 02:12:01] 2025-11-27 07:11:11,961 | INFO     | architecture information:
[2025-11-27 02:12:01] 2025-11-27 07:11:11,965 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:12:01] 2025-11-27 07:11:12,038 | INFO     | cat /etc/os-release:
[2025-11-27 02:12:01] NAME="CentOS Linux"
[2025-11-27 02:12:01] VERSION="7 (Core)"
[2025-11-27 02:12:01] ID="centos"
[2025-11-27 02:12:01] ID_LIKE="rhel fedora"
[2025-11-27 02:12:01] VERSION_ID="7"
[2025-11-27 02:12:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:12:01] ANSI_COLOR="0;31"
[2025-11-27 02:12:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:12:01] HOME_URL="https://www.centos.org/"
[2025-11-27 02:12:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:12:01] 
[2025-11-27 02:12:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:12:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:12:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:12:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:12:01] 
[2025-11-27 02:12:01] 2025-11-27 07:11:12,038 | INFO     | ***************************************
[2025-11-27 02:12:01] 2025-11-27 07:11:12,542 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 02:12:01] 2025-11-27 07:11:12,583 | INFO     | sufficient remaining disk space (69627543552 B)
[2025-11-27 02:12:01] 2025-11-27 07:11:12,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:12:01] 2025-11-27 07:11:12,583 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:12:01] 2025-11-27 07:11:12,583 | INFO     | update_server=False
[2025-11-27 02:12:01] 2025-11-27 07:11:12,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:12:01] 2025-11-27 07:11:12,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:12:01] 2025-11-27 07:11:12,584 | INFO     | aborting loop
[2025-11-27 02:12:01] 2025-11-27 07:11:12,689 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:12:01] 2025-11-27 07:11:12,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:12:01] 2025-11-27 07:11:12,845 | INFO     | all data control threads have been joined
[2025-11-27 02:12:01] 2025-11-27 07:11:13,296 | INFO     | all job control threads have been joined
[2025-11-27 02:12:01] 2025-11-27 07:11:13,303 | INFO     | all payload control threads have been joined
[2025-11-27 02:12:01] 2025-11-27 07:11:13,591 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:13,619 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:13,670 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:13,851 | INFO     | [data] control thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,055 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,252 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,252 | INFO     | [job] validate thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,257 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,308 | INFO     | [job] control thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,325 | INFO     | [payload] control thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,533 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,660 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,789 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:14,898 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:12:01] 2025-11-27 07:11:15,903 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:16,702 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:12:01] 2025-11-27 07:11:42,264 | INFO     | PID=262172 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 02:12:01] 2025-11-27 07:11:42,264 | INFO     | .. there are 47 such processes running
[2025-11-27 02:12:01] 2025-11-27 07:11:42,269 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:12:01] 2025-11-27 07:11:42,269 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:12:01] 2025-11-27 07:11:42,269 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:12:01] 2025-11-27 07:11:54,145 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:12:01] 2025-11-27 07:11:55,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569397471040)>', '<ExcThread(monitor, started 140568617273088)>']
[2025-11-27 02:12:01] 2025-11-27 07:11:55,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:12:01] 2025-11-27 07:11:55,349 | INFO     | [monitor] control thread has ended
[2025-11-27 02:12:01] 2025-11-27 07:12:00,177 | INFO     | all workflow threads have been joined
[2025-11-27 02:12:01] 2025-11-27 07:12:00,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:12:01] 2025-11-27 07:12:00,177 | INFO     | traces error code: 0
[2025-11-27 02:12:01] 2025-11-27 07:12:00,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:12:01] 2025-11-27 07:12:00,769 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:12:01] 2025-11-27 07:12:00,794 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:12:01] 2025-11-27 07:12:00,843 [wrapper] pilotpid: 262172
[2025-11-27 02:12:01] 2025-11-27 07:12:00,868 [wrapper] Pilot exit status: 0
[2025-11-27 02:12:01] 2025-11-27 07:12:00,926 [wrapper] pandaids: 6896713838
[2025-11-27 02:12:01] 2025-11-27 07:12:01,036 [wrapper] cleanup supervisor_pilot  176588 262173
[2025-11-27 02:12:01] 2025-11-27 07:12:01,051 [wrapper] Test setup, not cleaning
[2025-11-27 02:12:01] 2025-11-27 07:12:01,069 [wrapper] apfmon messages muted
[2025-11-27 02:12:01] 2025-11-27 07:12:01,105 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:12:01] 2025-11-27 07:12:01,134 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:12:01]  *** Error codes and diagnostics ***
[2025-11-27 02:12:01]     "exeErrorCode": 0,
[2025-11-27 02:12:01]     "exeErrorDiag": "",
[2025-11-27 02:12:01]     "pilotErrorCode": 0,
[2025-11-27 02:12:01]     "pilotErrorDiag": "",
[2025-11-27 02:12:01]  *** Listing of results directory ***
[2025-11-27 02:12:01] total 1322796
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:00 queuedata.json
[2025-11-27 02:12:01] -rwx------. 1 boincer umatlas     36292 Nov 25 01:01 runpilot2-wrapper.sh
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas       100 Nov 26 14:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:12:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 14:12 run_atlas
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas       105 Nov 26 14:12 job.xml
[2025-11-27 02:12:01] -rw-r--r--. 2 boincer umatlas 411920256 Nov 26 14:12 EVNT.47483658._002114.pool.root.1
[2025-11-27 02:12:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 14:12 start_atlas.sh
[2025-11-27 02:12:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 14:12 shared
[2025-11-27 02:12:01] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 14:12 input.tar.gz
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas         0 Nov 26 14:12 boinc_lockfile
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 14:12 pandaJob.out
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas        57 Nov 26 14:12 setup.sh.local
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas    991522 Nov 26 14:12 agis_schedconf.cvmfs.json
[2025-11-27 02:12:01] drwx------. 5 boincer umatlas      4096 Nov 26 14:12 pilot3
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas       533 Nov 27 01:59 boinc_task_state.xml
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas      6877 Nov 27 02:02 init_data.xml
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas 924020632 Nov 27 02:10 HITS.47556161._000980.pool.root.1
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas      1064 Nov 27 02:10 memory_monitor_summary.json
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas   1923832 Nov 27 02:10 log.47556161._000980.job.log.tgz.1
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas      8626 Nov 27 02:11 heartbeat.json
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas        95 Nov 27 02:11 pilot_heartbeat.json
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:11 boinc_mmap_file
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:11 wrapper_checkpoint.txt
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas      4823 Nov 27 02:12 pilotlog.txt
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas   5413946 Nov 27 02:12 log.47556161._000980.job.log.1
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas       353 Nov 27 02:12 output.list
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:12 runtime_log
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas   7362560 Nov 27 02:12 result.tar.gz
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 02:12 runtime_log.err
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas       661 Nov 27 02:12 GsBODmhI1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzBMKDmxDxqOo.diag
[2025-11-27 02:12:01] -rw-r--r--. 1 boincer umatlas     21349 Nov 27 02:12 stderr.txt
[2025-11-27 02:12:01] HITS file was successfully produced:
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas 924020632 Nov 27 02:10 shared/HITS.pool.root.1
[2025-11-27 02:12:01]  *** Contents of shared directory: ***
[2025-11-27 02:12:01] total 1312428
[2025-11-27 02:12:01] -rw-r--r--. 2 boincer umatlas 411920256 Nov 26 14:12 ATLAS.root_0
[2025-11-27 02:12:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 14:12 start_atlas.sh
[2025-11-27 02:12:01] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 14:12 input.tar.gz
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas 924020632 Nov 27 02:10 HITS.pool.root.1
[2025-11-27 02:12:01] -rw-------. 1 boincer umatlas   7362560 Nov 27 02:12 result.tar.gz
02:12:03 (256208): run_atlas exited; CPU time 226998.508334
02:12:03 (256208): called boinc_finish(0)

</stderr_txt>
]]>

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