Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:54:38 (3001627): wrapper (7.7.26015): starting
08:54:38 (3001627): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 08:54:38] Arguments: --nthreads 12
[2025-11-26 08:54:38] Threads: 12
[2025-11-26 08:54:38] Checking for CVMFS
[2025-11-26 08:54:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:54:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:54:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:54:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:54:40] 2.11.5.0 2503828 28367 241244 153328 0 605 27332280 45568000 19379 130560 0 252925406 99.770 175555507 25658 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 08:54:40] CVMFS is ok
[2025-11-26 08:54:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:54:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:54:40] Further information can be found at the LHC@home message board.
[2025-11-26 08:54:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:54:40] Checking for apptainer binary...
[2025-11-26 08:54:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:54:40] Running /usr/bin/apptainer --version
[2025-11-26 08:54:40] apptainer version 1.4.1-1.el9
[2025-11-26 08:54:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:54:40] wns0095.triumf.lcg
[2025-11-26 08:54:40] apptainer works
[2025-11-26 08:54:40] Set ATHENA_PROC_NUMBER=12
[2025-11-26 08:54:40] Set ATHENA_CORE_NUMBER=12
[2025-11-26 08:54:41] Starting ATLAS job with PandaID=6898120368
[2025-11-26 08:54:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:00:29]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | WARNING  | wrong length of table data, x=[1764176166.0, 1764176227.0], y=[2064.0, 621575.0] (must be same and length>=4)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | INFO     | could have reported an average CPU frequency of 2691 MHz (4 samples)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | INFO     | ..............................
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . Timing measurements:
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . get job = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . initial setup = 3 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . payload setup = 18 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . stage-in = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . payload execution = 110 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . stage-out = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . log creation = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | ..............................
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898120368/pilotlog.txt
[2025-11-26 09:00:29] 2025-11-26 16:59:55,930 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 09:00:29] - Log from pilotlog.txt -
[2025-11-26 09:00:29] 2025-11-26 16:59:55,812 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898120368/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,813 | INFO     | extracted standard info from prmon json
[2025-11-26 09:00:29] 2025-11-26 16:59:55,813 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:00:29] 2025-11-26 16:59:55,813 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:00:29] 2025-11-26 16:59:55,814 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 09:00:29] 2025-11-26 16:59:55,814 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | WARNING  | wrong length of table data, x=[1764176166.0, 1764176227.0], y=[2064.0, 621575.0] (must be same and length>=4)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | INFO     | could have reported an average CPU frequency of 2691 MHz (4 samples)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | INFO     | ..............................
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . Timing measurements:
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . get job = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . initial setup = 3 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . payload setup = 18 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . stage-in = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . payload execution = 110 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . stage-out = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . log creation = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | ..............................
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898120368/pilotlog.txt
[2025-11-26 09:00:29] 2025-11-26 16:59:55,930 | WARNING  | 
[2025-11-26 09:00:29] [begin log extracts]
[2025-11-26 09:00:29] - Log from pilotlog.txt -
[2025-11-26 09:00:29] 2025-11-26 16:59:55,812 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898120368/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,813 | INFO     | extracted standard info from prmon json
[2025-11-26 09:00:29] 2025-11-26 16:59:55,813 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:00:29] 2025-11-26 16:59:55,813 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:00:29] 2025-11-26 16:59:55,814 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 09:00:29] 2025-11-26 16:59:55,814 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | WARNING  | wrong length of table data, x=[1764176166.0, 1764176227.0], y=[2064.0, 621575.0] (must be same and length>=4)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | INFO     | could have reported an average CPU frequency of 2691 MHz (4 samples)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,815 | INFO     | ..............................
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . Timing measurements:
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . get job = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . initial setup = 3 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . payload setup = 18 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . stage-in = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . payload execution = 110 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . stage-out = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | . log creation = 0 s
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | ..............................
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 09:00:29] 2025-11-26 16:59:55,816 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898120368/pilotlog.txt
[2025-11-26 09:00:29] [end log extracts]
[2025-11-26 09:00:29] 2025-11-26 16:59:55,931 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 09:00:29] 2025-11-26 16:59:55,931 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | 
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | job summary report
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | --------------------------------------------------
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | PanDA job id: 6898120368
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | task id: 47556161
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 08:57:34,433 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | pilot state: failed 
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | transexitcode: 65
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | exeerrorcode: 65
[2025-11-26 09:00:29] 2025-11-26 16:59:56,379 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | exitcode: 65
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | cpuconsumptiontime: 41 s
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | nevents: 0
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | neventsw: 0
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | pid: 3017831
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | pgrp: 3017831
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | corecount: 12
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | event service: False
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | sizes: {0: 2284261, 10: 2284523, 11: 2284551, 131: 2309972, 132: 2314322, 264: 2314460}
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | --------------------------------------------------
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | 
[2025-11-26 09:00:29] 2025-11-26 16:59:56,380 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 09:00:29] 2025-11-26 16:59:56,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,483 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,483 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,483 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,483 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | job 6898120368 has completed (purged errors)
[2025-11-26 09:00:29] 2025-11-26 16:59:56,484 | INFO     | overall cleanup function is called
[2025-11-26 09:00:29] 2025-11-26 16:59:57,493 | INFO     | --- collectZombieJob: --- 10, [3017831]
[2025-11-26 09:00:29] 2025-11-26 16:59:57,493 | INFO     | zombie collector waiting for pid 3017831
[2025-11-26 09:00:29] 2025-11-26 16:59:57,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:00:29] 2025-11-26 16:59:57,493 | INFO     | collected zombie processes
[2025-11-26 09:00:29] 2025-11-26 16:59:57,493 | INFO     | will attempt to kill all subprocesses of pid=3017831
[2025-11-26 09:00:29] 2025-11-26 16:59:57,800 | INFO     | process IDs to be killed: [3017831] (in reverse order)
[2025-11-26 09:00:29] 2025-11-26 16:59:57,864 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:00:29] 2025-11-26 16:59:57,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:00:29] 2025-11-26 16:59:57,886 | INFO     | did not find any defunct processes belonging to 3017831
[2025-11-26 09:00:29] 2025-11-26 16:59:57,927 | INFO     | did not find any defunct processes belonging to 3017831
[2025-11-26 09:00:29] 2025-11-26 16:59:57,927 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:00:29] 2025-11-26 16:59:57,928 | INFO     | ready for new job
[2025-11-26 09:00:29] 2025-11-26 16:59:57,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:00:29] 2025-11-26 16:59:57,929 | INFO     | ***************************************
[2025-11-26 09:00:29] 2025-11-26 16:59:57,929 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:00:29] 2025-11-26 16:59:57,929 | INFO     | ***************************************
[2025-11-26 09:00:29] 2025-11-26 16:59:57,929 | INFO     | 
[2025-11-26 09:00:29] 2025-11-26 16:59:57,957 | INFO     | architecture information:
[2025-11-26 09:00:29] 2025-11-26 16:59:57,972 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:00:29] 2025-11-26 16:59:57,998 | INFO     | cat /etc/os-release:
[2025-11-26 09:00:29] NAME="CentOS Linux"
[2025-11-26 09:00:29] VERSION="7 (Core)"
[2025-11-26 09:00:29] ID="centos"
[2025-11-26 09:00:29] ID_LIKE="rhel fedora"
[2025-11-26 09:00:29] VERSION_ID="7"
[2025-11-26 09:00:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:00:29] ANSI_COLOR="0;31"
[2025-11-26 09:00:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:00:29] HOME_URL="https://www.centos.org/"
[2025-11-26 09:00:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:00:29] 
[2025-11-26 09:00:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:00:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:00:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:00:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:00:29] 
[2025-11-26 09:00:29] 2025-11-26 16:59:57,999 | INFO     | ***************************************
[2025-11-26 09:00:29] 2025-11-26 16:59:58,502 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 09:00:29] 2025-11-26 16:59:58,535 | INFO     | sufficient remaining disk space (1836255805440 B)
[2025-11-26 09:00:29] 2025-11-26 16:59:58,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:00:29] 2025-11-26 16:59:58,536 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:00:29] 2025-11-26 16:59:58,536 | INFO     | update_server=False
[2025-11-26 09:00:29] 2025-11-26 16:59:58,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:00:29] 2025-11-26 16:59:58,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:00:29] 2025-11-26 16:59:58,537 | INFO     | aborting loop
[2025-11-26 09:00:29] 2025-11-26 16:59:59,358 | INFO     | all data control threads have been joined
[2025-11-26 09:00:29] 2025-11-26 16:59:59,464 | INFO     | all payload control threads have been joined
[2025-11-26 09:00:29] 2025-11-26 16:59:59,542 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:00:29] 2025-11-26 16:59:59,543 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:00:29] 2025-11-26 16:59:59,587 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:00:29] 2025-11-26 16:59:59,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:00:29] 2025-11-26 17:00:00,037 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:00,046 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:00,168 | INFO     | all job control threads have been joined
[2025-11-26 09:00:29] 2025-11-26 17:00:00,310 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:00,364 | INFO     | [data] control thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:00,469 | INFO     | [payload] control thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:00,564 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:00,675 | INFO     | [job] validate thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:00,770 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:00,770 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:01,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:00:29] 2025-11-26 17:00:01,174 | INFO     | [job] control thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:01,306 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:00:29] 2025-11-26 17:00:02,004 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:02,061 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:05,315 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:00:29] 2025-11-26 17:00:08,529 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:00:29] 2025-11-26 17:00:08,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140098742548288)>', '<ExcThread(monitor, started 140098049918720)>']
[2025-11-26 09:00:29] 2025-11-26 17:00:13,812 | INFO     | all workflow threads have been joined
[2025-11-26 09:00:29] 2025-11-26 17:00:13,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:00:29] 2025-11-26 17:00:13,812 | INFO     | traces error code: 0
[2025-11-26 09:00:29] 2025-11-26 17:00:13,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:00:29] 2025-11-26 17:00:28,591 | INFO     | PID=3005352 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:00:29] 2025-11-26 17:00:28,591 | INFO     | .. there are 21 such processes running
[2025-11-26 09:00:29] 2025-11-26 17:00:28,592 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:00:29] 2025-11-26 17:00:28,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:00:29] 2025-11-26 17:00:28,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:00:29] 2025-11-26 17:00:28,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:00:29] 2025-11-26 17:00:28,592 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 09:00:29] 2025-11-26 17:00:28,592 | INFO     | [monitor] control thread has ended
[2025-11-26 09:00:29] 2025-11-26 17:00:28,765 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:00:29] 2025-11-26 17:00:28,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:00:29] 2025-11-26 17:00:28,768 [wrapper] pilotpid: 3005352
[2025-11-26 09:00:29] 2025-11-26 17:00:28,770 [wrapper] Pilot exit status: 0
[2025-11-26 09:00:29] 2025-11-26 17:00:28,855 [wrapper] pandaids: 6898120368
[2025-11-26 09:00:29] 2025-11-26 17:00:28,931 [wrapper] cleanup supervisor_pilot 3005358 3005353
[2025-11-26 09:00:29] 2025-11-26 17:00:28,934 [wrapper] Test setup, not cleaning
[2025-11-26 09:00:29] 2025-11-26 17:00:28,959 [wrapper] apfmon messages muted
[2025-11-26 09:00:29] 2025-11-26 17:00:28,981 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:00:29] 2025-11-26 17:00:29,010 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:00:29]  *** Error codes and diagnostics ***
[2025-11-26 09:00:29]     "exeErrorCode": 65,
[2025-11-26 09:00:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 09:00:29]     "pilotErrorCode": 1305,
[2025-11-26 09:00:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 09:00:29]  *** Listing of results directory ***
[2025-11-26 09:00:29] total 406100
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc    576529 Nov 25 18:38 pilot3.tar.gz
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc      5112 Nov 25 19:26 queuedata.json
[2025-11-26 09:00:29] -rwx------. 1 boinc boinc     36292 Nov 25 19:27 runpilot2-wrapper.sh
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc       100 Nov 26 08:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:00:29] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 08:54 run_atlas
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc       105 Nov 26 08:54 job.xml
[2025-11-26 09:00:29] -rw-r--r--. 2 boinc boinc 411627885 Nov 26 08:54 EVNT.47483658._002425.pool.root.1
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc      6595 Nov 26 08:54 init_data.xml
[2025-11-26 09:00:29] drwxrwx--x. 2 boinc boinc      4096 Nov 26 08:54 shared
[2025-11-26 09:00:29] -rw-r--r--. 2 boinc boinc    590109 Nov 26 08:54 input.tar.gz
[2025-11-26 09:00:29] -rw-r--r--. 2 boinc boinc     15847 Nov 26 08:54 start_atlas.sh
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc         0 Nov 26 08:54 boinc_lockfile
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc      2785 Nov 26 08:54 pandaJob.out
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc    991545 Nov 26 08:55 agis_schedconf.cvmfs.json
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc   1516240 Nov 26 08:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:00:29] drwx------. 5 boinc boinc      4096 Nov 26 08:55 pilot3
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc       524 Nov 26 08:57 boinc_task_state.xml
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc       987 Nov 26 08:57 memory_monitor_summary.json
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc     48953 Nov 26 08:57 log.47556161._004078.job.log.tgz.1
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc     10336 Nov 26 08:59 heartbeat.json
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc      8192 Nov 26 09:00 boinc_mmap_file
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc        23 Nov 26 09:00 wrapper_checkpoint.txt
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc       893 Nov 26 09:00 pilotlog.txt
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc        95 Nov 26 09:00 pilot_heartbeat.json
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc    102860 Nov 26 09:00 log.47556161._004078.job.log.1
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc       186 Nov 26 09:00 output.list
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc       620 Nov 26 09:00 runtime_log
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc    174080 Nov 26 09:00 result.tar.gz
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc      8636 Nov 26 09:00 runtime_log.err
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc       645 Nov 26 09:00 mRBMDmiMLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0oMKDmUM84kn.diag
[2025-11-26 09:00:29] -rw-r--r--. 1 boinc boinc     21737 Nov 26 09:00 stderr.txt
[2025-11-26 09:00:29] No HITS result produced
[2025-11-26 09:00:29]  *** Contents of shared directory: ***
[2025-11-26 09:00:29] total 402756
[2025-11-26 09:00:29] -rw-r--r--. 2 boinc boinc 411627885 Nov 26 08:54 ATLAS.root_0
[2025-11-26 09:00:29] -rw-r--r--. 2 boinc boinc    590109 Nov 26 08:54 input.tar.gz
[2025-11-26 09:00:29] -rw-r--r--. 2 boinc boinc     15847 Nov 26 08:54 start_atlas.sh
[2025-11-26 09:00:29] -rw-------. 1 boinc boinc    174080 Nov 26 09:00 result.tar.gz
09:00:31 (3001627): run_atlas exited; CPU time 44.715644
09:00:31 (3001627): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN