Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:57:12 (3000181): wrapper (7.7.26015): starting
14:57:12 (3000181): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 14:57:12] Arguments: --nthreads 8
[2025-11-26 14:57:12] Threads: 8
[2025-11-26 14:57:12] Checking for CVMFS
[2025-11-26 14:57:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:57:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:57:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:57:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:57:13] 2.13.3.0 7558 30499 365192 153333 3 831 31291861 32935930 26045 16776704 0 127175250 99.534 156006661 38386 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:57:13] CVMFS is ok
[2025-11-26 14:57:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:57:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:57:13] Further information can be found at the LHC@home message board.
[2025-11-26 14:57:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:57:13] Checking for apptainer binary...
[2025-11-26 14:57:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:57:13] Running /usr/bin/apptainer --version
[2025-11-26 14:57:13] apptainer version 1.4.4-1.el9
[2025-11-26 14:57:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:57:13] c6-6-39-2.aglt2.org
[2025-11-26 14:57:13] apptainer works
[2025-11-26 14:57:13] Set ATHENA_PROC_NUMBER=8
[2025-11-26 14:57:13] Set ATHENA_CORE_NUMBER=8
[2025-11-26 14:57:13] Starting ATLAS job with PandaID=6894239152
[2025-11-26 14:57:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:02:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:02:24] 2025-11-27 02:01:49,411 | INFO     | time since job start (21854s) is within the limit (172800.0s)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,644 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 21:02:24] 2025-11-27 02:01:49,648 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2915.6607857142853
[2025-11-26 21:02:24] 2025-11-27 02:01:49,658 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894239152/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,659 | INFO     | extracted standard info from prmon json
[2025-11-26 21:02:24] 2025-11-27 02:01:49,660 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:02:24] 2025-11-27 02:01:49,660 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:02:24] 2025-11-27 02:01:49,660 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 21:02:24] 2025-11-27 02:01:49,660 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 21:02:24] 2025-11-27 02:01:49,667 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:02:24] 2025-11-27 02:01:49,667 | INFO     | sum of square deviations: 14227036136.762575
[2025-11-26 21:02:24] 2025-11-27 02:01:49,670 | INFO     | sum of deviations: 9342857448.491653
[2025-11-26 21:02:24] 2025-11-27 02:01:49,671 | INFO     | mean x: 1764197985.6731844
[2025-11-26 21:02:24] 2025-11-27 02:01:49,671 | INFO     | mean y: 2585307.217877095
[2025-11-26 21:02:24] 2025-11-27 02:01:49,671 | INFO     | intersect: -1155958899.222255
[2025-11-26 21:02:24] 2025-11-27 02:01:49,671 | INFO     | chi2: 2.2377962994027287
[2025-11-26 21:02:24] 2025-11-27 02:01:49,672 | INFO     | sum of square deviations: 13639199174.458864
[2025-11-26 21:02:24] 2025-11-27 02:01:49,675 | INFO     | sum of deviations: 31549919902.017033
[2025-11-26 21:02:24] 2025-11-27 02:01:49,675 | INFO     | mean x: 1764197833.1728046
[2025-11-26 21:02:24] 2025-11-27 02:01:49,675 | INFO     | mean y: 2591001.3767705383
[2025-11-26 21:02:24] 2025-11-27 02:01:49,675 | INFO     | intersect: -4078315774.4510207
[2025-11-26 21:02:24] 2025-11-27 02:01:49,676 | INFO     | chi2: 1.5597718506431535
[2025-11-26 21:02:24] 2025-11-27 02:01:49,676 | INFO     | current chi2=1.5597718506431535 (change=30.298756367616704 %)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,677 | INFO     | sum of square deviations: 13067802414.307426
[2025-11-26 21:02:24] 2025-11-27 02:01:49,679 | INFO     | sum of deviations: 30852166352.88507
[2025-11-26 21:02:24] 2025-11-27 02:01:49,679 | INFO     | mean x: 1764197680.6752872
[2025-11-26 21:02:24] 2025-11-27 02:01:49,680 | INFO     | mean y: 2590815.1494252873
[2025-11-26 21:02:24] 2025-11-27 02:01:49,680 | INFO     | intersect: -4162556360.9339414
[2025-11-26 21:02:24] 2025-11-27 02:01:49,680 | INFO     | chi2: 1.5600657131586702
[2025-11-26 21:02:24] 2025-11-27 02:01:49,680 | INFO     | current chi2=1.5600657131586702 (change=-0.0188400960945341 %)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,681 | INFO     | right removable region: 347
[2025-11-26 21:02:24] 2025-11-27 02:01:49,681 | INFO     | sum of square deviations: 13639182949.110546
[2025-11-26 21:02:24] 2025-11-27 02:01:49,684 | INFO     | sum of deviations: -43239756898.15576
[2025-11-26 21:02:24] 2025-11-27 02:01:49,684 | INFO     | mean x: 1764198138.1756375
[2025-11-26 21:02:24] 2025-11-27 02:01:49,684 | INFO     | mean y: 2598849.4702549577
[2025-11-26 21:02:24] 2025-11-27 02:01:49,684 | INFO     | intersect: 5595565737.554138
[2025-11-26 21:02:24] 2025-11-27 02:01:49,685 | INFO     | chi2: 0.8544164748504572
[2025-11-26 21:02:24] 2025-11-27 02:01:49,685 | INFO     | current chi2=0.8544164748504572 (change=61.81884494676739 %)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,686 | INFO     | sum of square deviations: 13067748673.953978
[2025-11-26 21:02:24] 2025-11-27 02:01:49,688 | INFO     | sum of deviations: -38202585964.953995
[2025-11-26 21:02:24] 2025-11-27 02:01:49,688 | INFO     | mean x: 1764198290.678161
[2025-11-26 21:02:24] 2025-11-27 02:01:49,689 | INFO     | mean y: 2597490.5718390807
[2025-11-26 21:02:24] 2025-11-27 02:01:49,689 | INFO     | intersect: 5160099256.211834
[2025-11-26 21:02:24] 2025-11-27 02:01:49,689 | INFO     | chi2: 0.8360082519023948
[2025-11-26 21:02:24] 2025-11-27 02:01:49,689 | INFO     | current chi2=0.8360082519023948 (change=2.1544789326872826 %)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,689 | INFO     | left removable region: 20
[2025-11-26 21:02:24] 2025-11-27 02:01:49,690 | INFO     | sum of square deviations: 10841853486.990854
[2025-11-26 21:02:24] 2025-11-27 02:01:49,692 | INFO     | sum of deviations: 12719165666.52294
[2025-11-26 21:02:24] 2025-11-27 02:01:49,693 | INFO     | mean x: 1764198260.1834862
[2025-11-26 21:02:24] 2025-11-27 02:01:49,693 | INFO     | mean y: 2595007.2079510703
[2025-11-26 21:02:24] 2025-11-27 02:01:49,693 | INFO     | intersect: -2067081544.5726118
[2025-11-26 21:02:24] 2025-11-27 02:01:49,693 | INFO     | chi2: 0.005258993658378307
[2025-11-26 21:02:24] 2025-11-27 02:01:49,693 | INFO     | current memory leak: 1.17 B/s (using 327 data points, chi2=0.01)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,694 | INFO     | could have reported an average CPU frequency of 2882 MHz (15 samples)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,694 | INFO     | ..............................
[2025-11-26 21:02:24] 2025-11-27 02:01:49,694 | INFO     | . Timing measurements:
[2025-11-26 21:02:24] 2025-11-27 02:01:49,695 | INFO     | . get job = 0 s
[2025-11-26 21:02:24] 2025-11-27 02:01:49,695 | INFO     | . initial setup = 3 s
[2025-11-26 21:02:24] 2025-11-27 02:01:49,695 | INFO     | . payload setup = 12 s
[2025-11-26 21:02:24] 2025-11-27 02:01:49,695 | INFO     | . stage-in = 0 s
[2025-11-26 21:02:24] 2025-11-27 02:01:49,695 | INFO     | . payload execution = 21787 s
[2025-11-26 21:02:24] 2025-11-27 02:01:49,695 | INFO     | . stage-out = 3 s
[2025-11-26 21:02:24] 2025-11-27 02:01:49,695 | INFO     | . log creation = 0 s
[2025-11-26 21:02:24] 2025-11-27 02:01:49,695 | INFO     | ..............................
[2025-11-26 21:02:24] 2025-11-27 02:01:49,799 | INFO     | 
[2025-11-26 21:02:24] 2025-11-27 02:01:49,799 | INFO     | job summary report
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | --------------------------------------------------
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | PanDA job id: 6894239152
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | task id: 47523939
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | errors: (none)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | pilot state: finished 
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | transexitcode: 0
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | exeerrorcode: 0
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | exeerrordiag: 
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | exitcode: 0
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | exitmsg: OK
[2025-11-26 21:02:24] 2025-11-27 02:01:49,800 | INFO     | cpuconsumptiontime: 114156 s
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | nevents: 400
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | neventsw: 0
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | pid: 3020311
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | pgrp: 3020311
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | corecount: 8
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | event service: False
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | sizes: {0: 2283890, 1: 2283890, 10: 2284180, 12: 2284208, 21803: 2319015, 21804: 2319014, 21808: 2328196, 21809: 2328252, 21833: 2328446}
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | --------------------------------------------------
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | 
[2025-11-26 21:02:24] 2025-11-27 02:01:49,801 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 21:02:24] 2025-11-27 02:01:49,913 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,915 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:02:24] 2025-11-27 02:01:49,916 | INFO     | job 6894239152 has completed (purged errors)
[2025-11-26 21:02:24] 2025-11-27 02:01:49,916 | INFO     | overall cleanup function is called
[2025-11-26 21:02:24] 2025-11-27 02:01:50,944 | INFO     | --- collectZombieJob: --- 10, [3020311]
[2025-11-26 21:02:24] 2025-11-27 02:01:50,944 | INFO     | zombie collector waiting for pid 3020311
[2025-11-26 21:02:24] 2025-11-27 02:01:50,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:02:24] 2025-11-27 02:01:50,944 | INFO     | collected zombie processes
[2025-11-26 21:02:24] 2025-11-27 02:01:50,944 | INFO     | will attempt to kill all subprocesses of pid=3020311
[2025-11-26 21:02:24] 2025-11-27 02:01:51,597 | INFO     | process IDs to be killed: [3020311] (in reverse order)
[2025-11-26 21:02:24] 2025-11-27 02:01:51,771 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:02:24] 2025-11-27 02:01:51,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:02:24] 2025-11-27 02:01:51,787 | INFO     | did not find any defunct processes belonging to 3020311
[2025-11-26 21:02:24] 2025-11-27 02:01:51,803 | INFO     | did not find any defunct processes belonging to 3020311
[2025-11-26 21:02:24] 2025-11-27 02:01:51,809 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:02:24] 2025-11-27 02:01:51,809 | INFO     | ready for new job
[2025-11-26 21:02:24] 2025-11-27 02:01:51,809 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:02:24] 2025-11-27 02:01:51,812 | INFO     | ***************************************
[2025-11-26 21:02:24] 2025-11-27 02:01:51,842 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:02:24] 2025-11-27 02:01:51,842 | INFO     | ***************************************
[2025-11-26 21:02:24] 2025-11-27 02:01:51,842 | INFO     | 
[2025-11-26 21:02:24] 2025-11-27 02:01:51,846 | INFO     | architecture information:
[2025-11-26 21:02:24] 2025-11-27 02:01:51,848 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:02:24] 2025-11-27 02:01:51,891 | INFO     | cat /etc/os-release:
[2025-11-26 21:02:24] NAME="CentOS Linux"
[2025-11-26 21:02:24] VERSION="7 (Core)"
[2025-11-26 21:02:24] ID="centos"
[2025-11-26 21:02:24] ID_LIKE="rhel fedora"
[2025-11-26 21:02:24] VERSION_ID="7"
[2025-11-26 21:02:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:02:24] ANSI_COLOR="0;31"
[2025-11-26 21:02:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:02:24] HOME_URL="https://www.centos.org/"
[2025-11-26 21:02:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:02:24] 
[2025-11-26 21:02:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:02:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:02:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:02:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:02:24] 
[2025-11-26 21:02:24] 2025-11-27 02:01:51,891 | INFO     | ***************************************
[2025-11-26 21:02:24] 2025-11-27 02:01:52,394 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 21:02:24] 2025-11-27 02:01:52,444 | INFO     | sufficient remaining disk space (70018662400 B)
[2025-11-26 21:02:24] 2025-11-27 02:01:52,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:02:24] 2025-11-27 02:01:52,445 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:02:24] 2025-11-27 02:01:52,445 | INFO     | update_server=False
[2025-11-26 21:02:24] 2025-11-27 02:01:52,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:02:24] 2025-11-27 02:01:52,614 | INFO     | all job control threads have been joined
[2025-11-26 21:02:24] 2025-11-27 02:01:52,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:02:24] 2025-11-27 02:01:52,696 | INFO     | aborting loop
[2025-11-26 21:02:24] 2025-11-27 02:01:52,698 | INFO     | all data control threads have been joined
[2025-11-26 21:02:24] 2025-11-27 02:01:52,912 | INFO     | all payload control threads have been joined
[2025-11-26 21:02:24] 2025-11-27 02:01:53,451 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:53,620 | INFO     | [job] control thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:53,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:02:24] 2025-11-27 02:01:53,702 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:53,704 | INFO     | [data] control thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:53,794 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:53,831 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:53,920 | INFO     | [payload] control thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:54,052 | INFO     | [job] validate thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:54,207 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:54,393 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:54,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:02:24] 2025-11-27 02:01:54,485 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:54,783 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:54,824 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:02:24] 2025-11-27 02:01:54,851 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:55,695 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:55,837 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:01:58,416 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:02:24] 2025-11-27 02:02:12,999 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:02:24] 2025-11-27 02:02:13,349 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140644328896320)>', '<ExcThread(monitor, started 140643376547584)>']
[2025-11-26 21:02:24] 2025-11-27 02:02:18,374 | INFO     | all workflow threads have been joined
[2025-11-26 21:02:24] 2025-11-27 02:02:18,374 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:02:24] 2025-11-27 02:02:18,374 | INFO     | traces error code: 0
[2025-11-26 21:02:24] 2025-11-27 02:02:18,375 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:02:24] 2025-11-27 02:02:23,528 | INFO     | PID=3005927 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:02:24] 2025-11-27 02:02:23,528 | INFO     | .. there are 39 such processes running
[2025-11-26 21:02:24] 2025-11-27 02:02:23,529 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:02:24] 2025-11-27 02:02:23,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:02:24] 2025-11-27 02:02:23,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:02:24] 2025-11-27 02:02:23,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:02:24] 2025-11-27 02:02:23,529 | INFO     | [monitor] control thread has ended
[2025-11-26 21:02:24] 2025-11-27 02:02:23,792 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:02:24] 2025-11-27 02:02:23,818 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:02:24] 2025-11-27 02:02:23,840 [wrapper] pilotpid: 3005927
[2025-11-26 21:02:24] 2025-11-27 02:02:23,863 [wrapper] Pilot exit status: 0
[2025-11-26 21:02:24] 2025-11-27 02:02:23,949 [wrapper] pandaids: 6894239152
[2025-11-26 21:02:24] 2025-11-27 02:02:24,377 [wrapper] cleanup supervisor_pilot  292712 3005928
[2025-11-26 21:02:24] 2025-11-27 02:02:24,387 [wrapper] Test setup, not cleaning
[2025-11-26 21:02:24] 2025-11-27 02:02:24,424 [wrapper] apfmon messages muted
[2025-11-26 21:02:24] 2025-11-27 02:02:24,447 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:02:24] 2025-11-27 02:02:24,494 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:02:24]  *** Error codes and diagnostics ***
[2025-11-26 21:02:24]     "exeErrorCode": 0,
[2025-11-26 21:02:24]     "exeErrorDiag": "",
[2025-11-26 21:02:24]     "pilotErrorCode": 0,
[2025-11-26 21:02:24]     "pilotErrorDiag": "",
[2025-11-26 21:02:24]  *** Listing of results directory ***
[2025-11-26 21:02:24] total 624012
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:46 queuedata.json
[2025-11-26 21:02:24] -rwx------. 1 boincer umatlas     36292 Nov 25 00:49 runpilot2-wrapper.sh
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas       100 Nov 26 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:02:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 14:57 run_atlas
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas       105 Nov 26 14:57 job.xml
[2025-11-26 21:02:24] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 14:57 EVNT.47523935._000002.pool.root.1
[2025-11-26 21:02:24] -rw-r--r--. 2 boincer umatlas    589947 Nov 26 14:57 input.tar.gz
[2025-11-26 21:02:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 14:57 start_atlas.sh
[2025-11-26 21:02:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 14:57 shared
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas         0 Nov 26 14:57 boinc_lockfile
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas      2606 Nov 26 14:57 pandaJob.out
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas        57 Nov 26 14:57 setup.sh.local
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas    991522 Nov 26 14:57 agis_schedconf.cvmfs.json
[2025-11-26 21:02:24] drwx------. 5 boincer umatlas      4096 Nov 26 14:57 pilot3
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 20:58 init_data.xml
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas 330889385 Nov 26 21:00 HITS.47523939._000026.pool.root.1
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas       532 Nov 26 21:00 boinc_task_state.xml
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas      1045 Nov 26 21:01 memory_monitor_summary.json
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas    549430 Nov 26 21:01 log.47523939._000026.job.log.tgz.1
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas      7819 Nov 26 21:01 heartbeat.json
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:02 boinc_mmap_file
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:02 wrapper_checkpoint.txt
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas       823 Nov 26 21:02 pilotlog.txt
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas        95 Nov 26 21:02 pilot_heartbeat.json
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas   2913202 Nov 26 21:02 log.47523939._000026.job.log.1
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas       357 Nov 26 21:02 output.list
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:02 runtime_log
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas   3481600 Nov 26 21:02 result.tar.gz
[2025-11-26 21:02:24] -rw-------. 1 boincer umatlas       661 Nov 26 21:02 VeXMDmj60h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnBMKDmAFKVTn.diag
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 21:02 runtime_log.err
[2025-11-26 21:02:24] -rw-r--r--. 1 boincer umatlas     21319 Nov 26 21:02 stderr.txt
[2025-11-26 21:02:25] HITS file was successfully produced:
[2025-11-26 21:02:25] -rw-------. 1 boincer umatlas 330889385 Nov 26 21:00 shared/HITS.pool.root.1
[2025-11-26 21:02:25]  *** Contents of shared directory: ***
[2025-11-26 21:02:25] total 617432
[2025-11-26 21:02:25] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 14:57 ATLAS.root_0
[2025-11-26 21:02:25] -rw-r--r--. 2 boincer umatlas    589947 Nov 26 14:57 input.tar.gz
[2025-11-26 21:02:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 14:57 start_atlas.sh
[2025-11-26 21:02:25] -rw-------. 1 boincer umatlas 330889385 Nov 26 21:00 HITS.pool.root.1
[2025-11-26 21:02:25] -rw-------. 1 boincer umatlas   3481600 Nov 26 21:02 result.tar.gz
21:02:26 (3000181): run_atlas exited; CPU time 114908.590991
21:02:26 (3000181): called boinc_finish(0)

</stderr_txt>
]]>

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