Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:24:38 (326256): wrapper (7.7.26015): starting
17:24:38 (326256): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 17:24:38] Arguments: --nthreads 3
[2025-11-26 17:24:38] Threads: 3
[2025-11-26 17:24:38] Checking for CVMFS
[2025-11-26 17:24:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:24:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:24:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:24:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:24:38] 2.9.2.0 2184780 1014 73180 153326 2 88 35696336 36864000 0 130560 0 6960937 99.999 33069 732 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 17:24:38] CVMFS is ok
[2025-11-26 17:24:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:24:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:24:38] Further information can be found at the LHC@home message board.
[2025-11-26 17:24:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:24:38] Checking for apptainer binary...
[2025-11-26 17:24:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:24:38] Running /usr/bin/apptainer --version
[2025-11-26 17:24:38] apptainer version 1.4.1-1.1
[2025-11-26 17:24:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:24:38] thA335
[2025-11-26 17:24:38] apptainer works
[2025-11-26 17:24:38] Set ATHENA_PROC_NUMBER=3
[2025-11-26 17:24:38] Set ATHENA_CORE_NUMBER=3
[2025-11-26 17:24:38] Starting ATLAS job with PandaID=6898120309
[2025-11-26 17:24:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:28:57]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:28:57] 2025-11-26 16:28:06,383 | INFO     | update_server=False
[2025-11-26 17:28:57] 2025-11-26 16:28:06,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:28:57] 2025-11-26 16:28:06,384 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:28:57] 2025-11-26 16:28:06,396 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 17:28:57] 2025-11-26 16:28:06,396 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 17:28:57] 2025-11-26 16:28:06,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:28:57] 2025-11-26 16:28:06,396 | INFO     | will abort loop
[2025-11-26 17:28:57] 2025-11-26 16:28:06,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:28:57] 2025-11-26 16:28:06,698 | INFO     | all data control threads have been joined
[2025-11-26 17:28:57] 2025-11-26 16:28:07,039 | INFO     | all payload control threads have been joined
[2025-11-26 17:28:57] 2025-11-26 16:28:07,389 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:07,390 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:07,402 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:07,625 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:07,644 | INFO     | all job control threads have been joined
[2025-11-26 17:28:57] 2025-11-26 16:28:07,705 | INFO     | [data] control thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:07,865 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:07,889 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,007 | INFO     | [job] validate thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,045 | INFO     | [payload] control thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,080 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,087 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,156 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,538 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,650 | INFO     | [job] control thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,653 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:08,702 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:28:57] 2025-11-26 16:28:12,709 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:28:57] 2025-11-26 16:28:36,158 | INFO     | PID=329989 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 17:28:57] 2025-11-26 16:28:36,158 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:28:57] 2025-11-26 16:28:36,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:28:57] 2025-11-26 16:28:36,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:28:57] 2025-11-26 16:28:51,335 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:28:57] 2025-11-26 16:28:52,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152231475008)>', '<ExcThread(monitor, started 140151611184896)>']
[2025-11-26 17:28:57] 2025-11-26 16:28:53,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:28:57] 2025-11-26 16:28:53,239 | INFO     | [monitor] control thread has ended
[2025-11-26 17:28:57] 2025-11-26 16:28:57,567 | INFO     | all workflow threads have been joined
[2025-11-26 17:28:57] 2025-11-26 16:28:57,568 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:28:57] 2025-11-26 16:28:57,569 | INFO     | traces error code: 0
[2025-11-26 17:28:57] 2025-11-26 16:28:57,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:28:57] 2025-11-26 16:28:57,616 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:28:57] 2025-11-26 16:28:57,619 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:28:57] 2025-11-26 16:28:57,622 [wrapper] pilotpid: 329989
[2025-11-26 17:28:57] 2025-11-26 16:28:57,625 [wrapper] Pilot exit status: 0
[2025-11-26 17:28:57] 2025-11-26 16:28:57,633 [wrapper] pandaids: 6898120309
[2025-11-26 17:28:57] 2025-11-26 16:28:57,651 [wrapper] cleanup supervisor_pilot  329995 329990
[2025-11-26 17:28:57] 2025-11-26 16:28:57,654 [wrapper] Test setup, not cleaning
[2025-11-26 17:28:57] 2025-11-26 16:28:57,657 [wrapper] apfmon messages muted
[2025-11-26 17:28:57] 2025-11-26 16:28:57,659 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:28:57] 2025-11-26 16:28:57,662 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:28:57]  *** Error codes and diagnostics ***
[2025-11-26 17:28:57]     "exeErrorCode": 65,
[2025-11-26 17:28:57]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 17:28:57]     "pilotErrorCode": 1305,
[2025-11-26 17:28:57]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 17:28:57]  *** Listing of results directory ***
[2025-11-26 17:28:57] total 403220
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc    576529 Nov 26 03:38 pilot3.tar.gz
[2025-11-26 17:28:57] -rwx------ 1 boinc boinc     36292 Nov 26 04:16 runpilot2-wrapper.sh
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc      5112 Nov 26 04:16 queuedata.json
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc       100 Nov 26 17:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:28:57] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 17:24 run_atlas
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc       105 Nov 26 17:24 job.xml
[2025-11-26 17:28:57] -rw-r--r-- 2 boinc boinc 408707799 Nov 26 17:24 EVNT.47483658._003161.pool.root.1
[2025-11-26 17:28:57] -rw-r--r-- 2 boinc boinc    590101 Nov 26 17:24 input.tar.gz
[2025-11-26 17:28:57] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:24 start_atlas.sh
[2025-11-26 17:28:57] drwxrwx--x 2 boinc boinc      4096 Nov 26 17:24 shared
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:24 boinc_setup_complete
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc      6196 Nov 26 17:24 init_data.xml
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:24 boinc_lockfile
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc      2784 Nov 26 17:24 pandaJob.out
[2025-11-26 17:28:57] -rw------- 1 boinc boinc    991855 Nov 26 17:24 agis_schedconf.cvmfs.json
[2025-11-26 17:28:57] -rw------- 1 boinc boinc   1516240 Nov 26 17:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:28:57] drwx------ 5 boinc boinc      4096 Nov 26 17:24 pilot3
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc       523 Nov 26 17:25 boinc_task_state.xml
[2025-11-26 17:28:57] -rw------- 1 boinc boinc       946 Nov 26 17:25 memory_monitor_summary.json
[2025-11-26 17:28:57] -rw------- 1 boinc boinc     55585 Nov 26 17:26 log.47556173._001177.job.log.tgz.1
[2025-11-26 17:28:57] -rw------- 1 boinc boinc        95 Nov 26 17:27 pilot_heartbeat.json
[2025-11-26 17:28:57] -rw------- 1 boinc boinc      8404 Nov 26 17:28 heartbeat.json
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc      8192 Nov 26 17:28 boinc_mmap_file
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc        23 Nov 26 17:28 wrapper_checkpoint.txt
[2025-11-26 17:28:57] -rw------- 1 boinc boinc      4937 Nov 26 17:28 pilotlog.txt
[2025-11-26 17:28:57] -rw------- 1 boinc boinc     93668 Nov 26 17:28 log.47556173._001177.job.log.1
[2025-11-26 17:28:57] -rw------- 1 boinc boinc       186 Nov 26 17:28 output.list
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc       620 Nov 26 17:28 runtime_log
[2025-11-26 17:28:57] -rw------- 1 boinc boinc    163840 Nov 26 17:28 result.tar.gz
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc      8744 Nov 26 17:28 runtime_log.err
[2025-11-26 17:28:57] -rw------- 1 boinc boinc       649 Nov 26 17:28 RMDNDmaCLi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1nMKDmpsUo8m.diag
[2025-11-26 17:28:57] -rw-r--r-- 1 boinc boinc      8015 Nov 26 17:28 stderr.txt
[2025-11-26 17:28:57] No HITS result produced
[2025-11-26 17:28:57]  *** Contents of shared directory: ***
[2025-11-26 17:28:57] total 399892
[2025-11-26 17:28:57] -rw-r--r-- 2 boinc boinc 408707799 Nov 26 17:24 ATLAS.root_0
[2025-11-26 17:28:57] -rw-r--r-- 2 boinc boinc    590101 Nov 26 17:24 input.tar.gz
[2025-11-26 17:28:57] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:24 start_atlas.sh
[2025-11-26 17:28:57] -rw------- 1 boinc boinc    163840 Nov 26 17:28 result.tar.gz
17:28:59 (326256): run_atlas exited; CPU time 32.036061
17:28:59 (326256): called boinc_finish(0)

</stderr_txt>
]]>

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