Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:29:02 (347111): wrapper (7.7.26015): starting
17:29:02 (347111): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 17:29:02] Arguments: --nthreads 3
[2025-11-26 17:29:02] Threads: 3
[2025-11-26 17:29:02] Checking for CVMFS
[2025-11-26 17:29:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:29:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:29:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:29:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:29:03] 2.9.2.0 2184780 1018 72936 153326 2 88 35696336 36864000 0 130560 0 7023543 99.999 33070 732 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 17:29:03] CVMFS is ok
[2025-11-26 17:29:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:29:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:29:03] Further information can be found at the LHC@home message board.
[2025-11-26 17:29:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:29:03] Checking for apptainer binary...
[2025-11-26 17:29:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:29:03] Running /usr/bin/apptainer --version
[2025-11-26 17:29:03] apptainer version 1.4.1-1.1
[2025-11-26 17:29:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:29:03] thA335
[2025-11-26 17:29:03] apptainer works
[2025-11-26 17:29:03] Set ATHENA_PROC_NUMBER=3
[2025-11-26 17:29:03] Set ATHENA_CORE_NUMBER=3
[2025-11-26 17:29:03] Starting ATLAS job with PandaID=6896990408
[2025-11-26 17:29:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:33:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:33:20] 2025-11-26 16:32:32,820 | INFO     | update_server=False
[2025-11-26 17:33:20] 2025-11-26 16:32:32,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:33:20] 2025-11-26 16:32:32,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:33:20] 2025-11-26 16:32:32,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:33:20] 2025-11-26 16:32:32,820 | INFO     | aborting loop
[2025-11-26 17:33:20] 2025-11-26 16:32:33,316 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:33:20] 2025-11-26 16:32:33,461 | INFO     | all job control threads have been joined
[2025-11-26 17:33:20] 2025-11-26 16:32:33,582 | INFO     | all data control threads have been joined
[2025-11-26 17:33:20] 2025-11-26 16:32:33,826 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:33,827 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:33,827 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:33,848 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:33,899 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:33,986 | INFO     | all payload control threads have been joined
[2025-11-26 17:33:20] 2025-11-26 16:32:34,467 | INFO     | [job] control thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:34,469 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:34,588 | INFO     | [data] control thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:34,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:34,886 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:34,961 | INFO     | [job] validate thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:34,991 | INFO     | [payload] control thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:35,032 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:35,087 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:35,322 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:32:35,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:33:20] 2025-11-26 16:32:39,644 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:33:20] 2025-11-26 16:33:02,815 | INFO     | PID=350844 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 17:33:20] 2025-11-26 16:33:02,815 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:33:20] 2025-11-26 16:33:02,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:33:20] 2025-11-26 16:33:02,815 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:33:20] 2025-11-26 16:33:13,618 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:33:20] 2025-11-26 16:33:15,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139897239582528)>', '<ExcThread(monitor, started 139896463283968)>']
[2025-11-26 17:33:20] 2025-11-26 16:33:15,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:33:20] 2025-11-26 16:33:15,885 | INFO     | [monitor] control thread has ended
[2025-11-26 17:33:20] 2025-11-26 16:33:20,502 | INFO     | all workflow threads have been joined
[2025-11-26 17:33:20] 2025-11-26 16:33:20,503 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:33:20] 2025-11-26 16:33:20,503 | INFO     | traces error code: 0
[2025-11-26 17:33:20] 2025-11-26 16:33:20,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:33:20] 2025-11-26 16:33:20,553 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:33:20] 2025-11-26 16:33:20,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:33:20] 2025-11-26 16:33:20,559 [wrapper] pilotpid: 350844
[2025-11-26 17:33:20] 2025-11-26 16:33:20,562 [wrapper] Pilot exit status: 0
[2025-11-26 17:33:20] 2025-11-26 16:33:20,569 [wrapper] pandaids: 6896990408
[2025-11-26 17:33:20] 2025-11-26 16:33:20,585 [wrapper] cleanup supervisor_pilot  350850 350845
[2025-11-26 17:33:20] 2025-11-26 16:33:20,588 [wrapper] Test setup, not cleaning
[2025-11-26 17:33:20] 2025-11-26 16:33:20,591 [wrapper] apfmon messages muted
[2025-11-26 17:33:20] 2025-11-26 16:33:20,593 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:33:20] 2025-11-26 16:33:20,596 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:33:20]  *** Error codes and diagnostics ***
[2025-11-26 17:33:20]     "exeErrorCode": 65,
[2025-11-26 17:33:20]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 17:33:20]     "pilotErrorCode": 1305,
[2025-11-26 17:33:20]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 17:33:20]  *** Listing of results directory ***
[2025-11-26 17:33:20] total 406632
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc      5112 Nov 25 17:55 queuedata.json
[2025-11-26 17:33:20] -rwx------ 1 boinc boinc     36292 Nov 25 17:56 runpilot2-wrapper.sh
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc       100 Nov 26 17:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:33:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 17:29 run_atlas
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc       105 Nov 26 17:29 job.xml
[2025-11-26 17:33:20] -rw-r--r-- 2 boinc boinc 412192029 Nov 26 17:29 EVNT.47483658._002172.pool.root.1
[2025-11-26 17:33:20] drwxrwx--x 2 boinc boinc      4096 Nov 26 17:29 shared
[2025-11-26 17:33:20] -rw-r--r-- 2 boinc boinc    590108 Nov 26 17:29 input.tar.gz
[2025-11-26 17:33:20] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:29 start_atlas.sh
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:29 boinc_setup_complete
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc      6196 Nov 26 17:29 init_data.xml
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:29 boinc_lockfile
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc      2786 Nov 26 17:29 pandaJob.out
[2025-11-26 17:33:20] -rw------- 1 boinc boinc    991855 Nov 26 17:29 agis_schedconf.cvmfs.json
[2025-11-26 17:33:20] -rw------- 1 boinc boinc   1516240 Nov 26 17:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:33:20] drwx------ 5 boinc boinc      4096 Nov 26 17:29 pilot3
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc       522 Nov 26 17:30 boinc_task_state.xml
[2025-11-26 17:33:20] -rw------- 1 boinc boinc       955 Nov 26 17:30 memory_monitor_summary.json
[2025-11-26 17:33:20] -rw------- 1 boinc boinc     56236 Nov 26 17:30 log.47556161._001557.job.log.tgz.1
[2025-11-26 17:33:20] -rw------- 1 boinc boinc        95 Nov 26 17:32 pilot_heartbeat.json
[2025-11-26 17:33:20] -rw------- 1 boinc boinc      8410 Nov 26 17:32 heartbeat.json
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc      8192 Nov 26 17:33 boinc_mmap_file
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc        22 Nov 26 17:33 wrapper_checkpoint.txt
[2025-11-26 17:33:20] -rw------- 1 boinc boinc      4751 Nov 26 17:33 pilotlog.txt
[2025-11-26 17:33:20] -rw------- 1 boinc boinc     93835 Nov 26 17:33 log.47556161._001557.job.log.1
[2025-11-26 17:33:20] -rw------- 1 boinc boinc       186 Nov 26 17:33 output.list
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc       620 Nov 26 17:33 runtime_log
[2025-11-26 17:33:20] -rw------- 1 boinc boinc    174080 Nov 26 17:33 result.tar.gz
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc      8744 Nov 26 17:33 runtime_log.err
[2025-11-26 17:33:20] -rw------- 1 boinc boinc       649 Nov 26 17:33 1hHLDmSWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0SMKDm6RIYMo.diag
[2025-11-26 17:33:20] -rw-r--r-- 1 boinc boinc      7785 Nov 26 17:33 stderr.txt
[2025-11-26 17:33:20] No HITS result produced
[2025-11-26 17:33:20]  *** Contents of shared directory: ***
[2025-11-26 17:33:20] total 403304
[2025-11-26 17:33:20] -rw-r--r-- 2 boinc boinc 412192029 Nov 26 17:29 ATLAS.root_0
[2025-11-26 17:33:20] -rw-r--r-- 2 boinc boinc    590108 Nov 26 17:29 input.tar.gz
[2025-11-26 17:33:20] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:29 start_atlas.sh
[2025-11-26 17:33:20] -rw------- 1 boinc boinc    174080 Nov 26 17:33 result.tar.gz
17:33:22 (347111): run_atlas exited; CPU time 31.424265
17:33:22 (347111): called boinc_finish(0)

</stderr_txt>
]]>

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