Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:24:05 (24297): wrapper (7.7.26015): starting
11:24:05 (24297): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 11:24:05] Arguments: --nthreads 12
[2025-11-26 11:24:05] Threads: 12
[2025-11-26 11:24:05] Checking for CVMFS
[2025-11-26 11:24:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:24:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:24:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:24:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:24:05] 2.11.2.0 3165 73538 91008 153328 3 80 19174019 20275200 1 130560 0 30900279 99.916 3989066 36894 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 11:24:05] CVMFS is ok
[2025-11-26 11:24:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:24:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:24:05] Further information can be found at the LHC@home message board.
[2025-11-26 11:24:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:24:05] Checking for apptainer binary...
[2025-11-26 11:24:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:24:05] Running /usr/bin/apptainer --version
[2025-11-26 11:24:05] apptainer version 1.3.2-1.el7
[2025-11-26 11:24:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:24:07] c-115-40.aglt2.org
[2025-11-26 11:24:07] apptainer works
[2025-11-26 11:24:07] Set ATHENA_PROC_NUMBER=12
[2025-11-26 11:24:07] Set ATHENA_CORE_NUMBER=12
[2025-11-26 11:24:07] Starting ATLAS job with PandaID=6897373031
[2025-11-26 11:24:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:58:07]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:58:07] 2025-11-26 22:57:26,208 | INFO     | time since job start (23585s) is within the limit (172800.0s)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,185 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 17:58:07] 2025-11-26 22:57:28,189 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5
[2025-11-26 17:58:07] 2025-11-26 22:57:28,191 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897373031/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,191 | INFO     | extracted standard info from prmon json
[2025-11-26 17:58:07] 2025-11-26 22:57:28,192 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:58:07] 2025-11-26 22:57:28,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:58:07] 2025-11-26 22:57:28,198 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:58:07] 2025-11-26 22:57:28,198 | INFO     | sum of square deviations: 17833550247.93787
[2025-11-26 17:58:07] 2025-11-26 22:57:28,201 | INFO     | sum of deviations: 278614133963.6578
[2025-11-26 17:58:07] 2025-11-26 22:57:28,202 | INFO     | mean x: 1764186032.7720208
[2025-11-26 17:58:07] 2025-11-26 22:57:28,202 | INFO     | mean y: 4044502.2461139895
[2025-11-26 17:58:07] 2025-11-26 22:57:28,202 | INFO     | intersect: -27557891110.007767
[2025-11-26 17:58:07] 2025-11-26 22:57:28,202 | INFO     | chi2: 5.347149563415527
[2025-11-26 17:58:07] 2025-11-26 22:57:28,203 | INFO     | sum of square deviations: 17149504330.06306
[2025-11-26 17:58:07] 2025-11-26 22:57:28,206 | INFO     | sum of deviations: 445413614005.189
[2025-11-26 17:58:07] 2025-11-26 22:57:28,206 | INFO     | mean x: 1764185880.2755907
[2025-11-26 17:58:07] 2025-11-26 22:57:28,206 | INFO     | mean y: 4081637.8267716537
[2025-11-26 17:58:07] 2025-11-26 22:57:28,206 | INFO     | intersect: -45816041998.80705
[2025-11-26 17:58:07] 2025-11-26 22:57:28,206 | INFO     | chi2: 2.582327065038226
[2025-11-26 17:58:07] 2025-11-26 22:57:28,206 | INFO     | current chi2=2.582327065038226 (change=51.706473993056825 %)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,207 | INFO     | sum of square deviations: 16483156677.23404
[2025-11-26 17:58:07] 2025-11-26 22:57:28,210 | INFO     | sum of deviations: 471832346045.617
[2025-11-26 17:58:07] 2025-11-26 22:57:28,210 | INFO     | mean x: 1764185727.7765958
[2025-11-26 17:58:07] 2025-11-26 22:57:28,210 | INFO     | mean y: 4087624.138297872
[2025-11-26 17:58:07] 2025-11-26 22:57:28,210 | INFO     | intersect: -50495941411.36236
[2025-11-26 17:58:07] 2025-11-26 22:57:28,211 | INFO     | chi2: 2.3427829047789936
[2025-11-26 17:58:07] 2025-11-26 22:57:28,211 | INFO     | current chi2=2.3427829047789936 (change=9.276290501787642 %)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,211 | INFO     | right removable region: 375
[2025-11-26 17:58:07] 2025-11-26 22:57:28,211 | INFO     | sum of square deviations: 17149440280.063044
[2025-11-26 17:58:07] 2025-11-26 22:57:28,214 | INFO     | sum of deviations: 138377242514.33862
[2025-11-26 17:58:07] 2025-11-26 22:57:28,214 | INFO     | mean x: 1764186185.2755907
[2025-11-26 17:58:07] 2025-11-26 22:57:28,214 | INFO     | mean y: 4075639.6062992127
[2025-11-26 17:58:07] 2025-11-26 22:57:28,215 | INFO     | intersect: -14230979010.202303
[2025-11-26 17:58:07] 2025-11-26 22:57:28,215 | INFO     | chi2: 3.123985319184103
[2025-11-26 17:58:07] 2025-11-26 22:57:28,215 | INFO     | time since job start (23587s) is within the limit (172800.0s)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,215 | INFO     | current chi2=3.123985319184103 (change=41.57662354241992 %)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,216 | INFO     | 23589s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 17:58:07] 2025-11-26 22:57:28,216 | INFO     | sum of square deviations: 16483074693.234016
[2025-11-26 17:58:07] 2025-11-26 22:57:28,219 | INFO     | sum of deviations: 106943566326.37245
[2025-11-26 17:58:07] 2025-11-26 22:57:28,220 | INFO     | mean x: 1764186337.7765958
[2025-11-26 17:58:07] 2025-11-26 22:57:28,220 | INFO     | mean y: 4082824.087765957
[2025-11-26 17:58:07] 2025-11-26 22:57:28,220 | INFO     | intersect: -11442105592.660488
[2025-11-26 17:58:07] 2025-11-26 22:57:28,220 | INFO     | chi2: 3.0717706691303674
[2025-11-26 17:58:07] 2025-11-26 22:57:28,220 | INFO     | current chi2=3.0717706691303674 (change=1.6714115054603549 %)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,220 | INFO     | left removable region: 20
[2025-11-26 17:58:07] 2025-11-26 22:57:28,221 | INFO     | sum of square deviations: 13872673508.264803
[2025-11-26 17:58:07] 2025-11-26 22:57:28,223 | INFO     | sum of deviations: 265022008782.12387
[2025-11-26 17:58:07] 2025-11-26 22:57:28,224 | INFO     | mean x: 1764186307.284507
[2025-11-26 17:58:07] 2025-11-26 22:57:28,224 | INFO     | mean y: 4135920.6225352115
[2025-11-26 17:58:07] 2025-11-26 22:57:28,224 | INFO     | intersect: -33698682699.30031
[2025-11-26 17:58:07] 2025-11-26 22:57:28,224 | INFO     | chi2: 0.017835083042582685
[2025-11-26 17:58:07] 2025-11-26 22:57:28,224 | INFO     | current memory leak: 19.10 B/s (using 355 data points, chi2=0.02)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,225 | INFO     | could have reported an average CPU frequency of 2616 MHz (16 samples)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,225 | INFO     | ..............................
[2025-11-26 17:58:07] 2025-11-26 22:57:28,225 | INFO     | . Timing measurements:
[2025-11-26 17:58:07] 2025-11-26 22:57:28,225 | INFO     | . get job = 0 s
[2025-11-26 17:58:07] 2025-11-26 22:57:28,225 | INFO     | . initial setup = 2 s
[2025-11-26 17:58:07] 2025-11-26 22:57:28,225 | INFO     | . payload setup = 7 s
[2025-11-26 17:58:07] 2025-11-26 22:57:28,225 | INFO     | . stage-in = 0 s
[2025-11-26 17:58:07] 2025-11-26 22:57:28,225 | INFO     | . payload execution = 23549 s
[2025-11-26 17:58:07] 2025-11-26 22:57:28,226 | INFO     | . stage-out = 3 s
[2025-11-26 17:58:07] 2025-11-26 22:57:28,226 | INFO     | . log creation = 0 s
[2025-11-26 17:58:07] 2025-11-26 22:57:28,226 | INFO     | ..............................
[2025-11-26 17:58:07] 2025-11-26 22:57:28,302 | INFO     | 
[2025-11-26 17:58:07] 2025-11-26 22:57:28,302 | INFO     | job summary report
[2025-11-26 17:58:07] 2025-11-26 22:57:28,302 | INFO     | --------------------------------------------------
[2025-11-26 17:58:07] 2025-11-26 22:57:28,302 | INFO     | PanDA job id: 6897373031
[2025-11-26 17:58:07] 2025-11-26 22:57:28,303 | INFO     | task id: 47556161
[2025-11-26 17:58:07] 2025-11-26 22:57:28,303 | INFO     | errors: (none)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,303 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:58:07] 2025-11-26 22:57:28,303 | INFO     | pilot state: finished 
[2025-11-26 17:58:07] 2025-11-26 22:57:28,303 | INFO     | transexitcode: 0
[2025-11-26 17:58:07] 2025-11-26 22:57:28,303 | INFO     | exeerrorcode: 0
[2025-11-26 17:58:07] 2025-11-26 22:57:28,304 | INFO     | exeerrordiag: 
[2025-11-26 17:58:07] 2025-11-26 22:57:28,304 | INFO     | exitcode: 0
[2025-11-26 17:58:07] 2025-11-26 22:57:28,304 | INFO     | exitmsg: OK
[2025-11-26 17:58:07] 2025-11-26 22:57:28,304 | INFO     | cpuconsumptiontime: 272493 s
[2025-11-26 17:58:07] 2025-11-26 22:57:28,304 | INFO     | nevents: 1000
[2025-11-26 17:58:07] 2025-11-26 22:57:28,304 | INFO     | neventsw: 0
[2025-11-26 17:58:07] 2025-11-26 22:57:28,305 | INFO     | pid: 2079
[2025-11-26 17:58:07] 2025-11-26 22:57:28,305 | INFO     | pgrp: 2079
[2025-11-26 17:58:07] 2025-11-26 22:57:28,305 | INFO     | corecount: 12
[2025-11-26 17:58:07] 2025-11-26 22:57:28,305 | INFO     | event service: False
[2025-11-26 17:58:07] 2025-11-26 22:57:28,305 | INFO     | sizes: {0: 2284094, 1: 2284293, 5: 2284555, 11: 2284611, 23560: 2320599, 23564: 2329593, 23565: 2329777, 23571: 2330023}
[2025-11-26 17:58:07] 2025-11-26 22:57:28,305 | INFO     | --------------------------------------------------
[2025-11-26 17:58:07] 2025-11-26 22:57:28,305 | INFO     | 
[2025-11-26 17:58:07] 2025-11-26 22:57:28,306 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 17:58:07] 2025-11-26 22:57:28,329 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,329 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,329 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,329 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,329 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,332 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:58:07] 2025-11-26 22:57:28,332 | INFO     | job 6897373031 has completed (purged errors)
[2025-11-26 17:58:07] 2025-11-26 22:57:28,332 | INFO     | overall cleanup function is called
[2025-11-26 17:58:07] 2025-11-26 22:57:29,349 | INFO     | --- collectZombieJob: --- 10, [2079]
[2025-11-26 17:58:07] 2025-11-26 22:57:29,349 | INFO     | zombie collector waiting for pid 2079
[2025-11-26 17:58:07] 2025-11-26 22:57:29,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:58:07] 2025-11-26 22:57:29,349 | INFO     | collected zombie processes
[2025-11-26 17:58:07] 2025-11-26 22:57:29,350 | INFO     | will attempt to kill all subprocesses of pid=2079
[2025-11-26 17:58:07] 2025-11-26 22:57:29,436 | INFO     | process IDs to be killed: [2079] (in reverse order)
[2025-11-26 17:58:07] 2025-11-26 22:57:29,481 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:58:07] 2025-11-26 22:57:29,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:58:07] 2025-11-26 22:57:29,485 | INFO     | did not find any defunct processes belonging to 2079
[2025-11-26 17:58:07] 2025-11-26 22:57:29,488 | INFO     | did not find any defunct processes belonging to 2079
[2025-11-26 17:58:07] 2025-11-26 22:57:29,490 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:58:07] 2025-11-26 22:57:29,490 | INFO     | ready for new job
[2025-11-26 17:58:07] 2025-11-26 22:57:29,490 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:58:07] 2025-11-26 22:57:29,493 | INFO     | ***************************************
[2025-11-26 17:58:07] 2025-11-26 22:57:29,493 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:58:07] 2025-11-26 22:57:29,493 | INFO     | ***************************************
[2025-11-26 17:58:07] 2025-11-26 22:57:29,493 | INFO     | 
[2025-11-26 17:58:07] 2025-11-26 22:57:29,494 | INFO     | architecture information:
[2025-11-26 17:58:07] 2025-11-26 22:57:29,494 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:58:07] 2025-11-26 22:57:29,511 | INFO     | cat /etc/os-release:
[2025-11-26 17:58:07] NAME="CentOS Linux"
[2025-11-26 17:58:07] VERSION="7 (Core)"
[2025-11-26 17:58:07] ID="centos"
[2025-11-26 17:58:07] ID_LIKE="rhel fedora"
[2025-11-26 17:58:07] VERSION_ID="7"
[2025-11-26 17:58:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:58:07] ANSI_COLOR="0;31"
[2025-11-26 17:58:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:58:07] HOME_URL="https://www.centos.org/"
[2025-11-26 17:58:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:58:07] 
[2025-11-26 17:58:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:58:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:58:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:58:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:58:07] 
[2025-11-26 17:58:07] 2025-11-26 22:57:29,511 | INFO     | ***************************************
[2025-11-26 17:58:07] 2025-11-26 22:57:30,014 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 17:58:07] 2025-11-26 22:57:30,031 | INFO     | sufficient remaining disk space (17581473792 B)
[2025-11-26 17:58:07] 2025-11-26 22:57:30,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:58:07] 2025-11-26 22:57:30,031 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:58:07] 2025-11-26 22:57:30,031 | INFO     | update_server=False
[2025-11-26 17:58:07] 2025-11-26 22:57:30,032 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:58:07] 2025-11-26 22:57:30,032 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:58:07] 2025-11-26 22:57:30,032 | INFO     | aborting loop
[2025-11-26 17:58:07] 2025-11-26 22:57:30,032 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 17:58:07] 2025-11-26 22:57:30,033 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:58:07] 2025-11-26 22:57:30,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:58:07] 2025-11-26 22:57:30,033 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:58:07] 2025-11-26 22:57:30,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:58:07] 2025-11-26 22:57:30,033 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:58:07] 2025-11-26 22:57:30,855 | INFO     | all data control threads have been joined
[2025-11-26 17:58:07] 2025-11-26 22:57:31,035 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:31,037 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:31,038 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:31,262 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:31,393 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:31,417 | INFO     | all payload control threads have been joined
[2025-11-26 17:58:07] 2025-11-26 22:57:31,424 | INFO     | all job control threads have been joined
[2025-11-26 17:58:07] 2025-11-26 22:57:31,608 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:31,861 | INFO     | [data] control thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:32,004 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:32,039 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:32,109 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:32,422 | INFO     | [payload] control thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:32,430 | INFO     | [job] control thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:32,463 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:32,465 | INFO     | [job] validate thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:33,408 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:58:07] 2025-11-26 22:57:37,412 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:40,594 | INFO     | job.realtimelogging is not enabled
[2025-11-26 17:58:07] 2025-11-26 22:57:41,600 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:58:07] 2025-11-26 22:57:59,711 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:58:07] 2025-11-26 22:58:01,704 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326549317440)>', '<ExcThread(monitor, started 140325439928064)>']
[2025-11-26 17:58:07] 2025-11-26 22:58:02,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:58:07] 2025-11-26 22:58:02,197 | INFO     | [monitor] control thread has ended
[2025-11-26 17:58:07] 2025-11-26 22:58:06,730 | INFO     | all workflow threads have been joined
[2025-11-26 17:58:07] 2025-11-26 22:58:06,730 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:58:07] 2025-11-26 22:58:06,730 | INFO     | traces error code: 0
[2025-11-26 17:58:07] 2025-11-26 22:58:06,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:58:07] 2025-11-26 22:58:06,820 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:58:07] 2025-11-26 22:58:06,824 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:58:07] 2025-11-26 22:58:06,829 [wrapper] pilotpid: 28051
[2025-11-26 17:58:07] 2025-11-26 22:58:06,832 [wrapper] Pilot exit status: 0
[2025-11-26 17:58:07] 2025-11-26 22:58:06,847 [wrapper] pandaids: 6897373031
[2025-11-26 17:58:07] 2025-11-26 22:58:06,885 [wrapper] cleanup supervisor_pilot 15591 28052
[2025-11-26 17:58:07] 2025-11-26 22:58:06,889 [wrapper] Test setup, not cleaning
[2025-11-26 17:58:07] 2025-11-26 22:58:06,893 [wrapper] apfmon messages muted
[2025-11-26 17:58:07] 2025-11-26 22:58:06,896 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:58:07] 2025-11-26 22:58:06,900 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:58:07]  *** Error codes and diagnostics ***
[2025-11-26 17:58:07]     "exeErrorCode": 0,
[2025-11-26 17:58:07]     "exeErrorDiag": "",
[2025-11-26 17:58:07]     "pilotErrorCode": 0,
[2025-11-26 17:58:07]     "pilotErrorDiag": "",
[2025-11-26 17:58:07]  *** Listing of results directory ***
[2025-11-26 17:58:07] total 1317340
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 17:58:07] -rwx------ 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas       100 Nov 26 11:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:58:07] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 11:24 run_atlas
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas       105 Nov 26 11:24 job.xml
[2025-11-26 17:58:07] -rw-r--r-- 2 boincer umatlas 412345559 Nov 26 11:24 EVNT.47483658._002212.pool.root.1
[2025-11-26 17:58:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 11:24 start_atlas.sh
[2025-11-26 17:58:07] drwxrwx--x 2 boincer umatlas      4096 Nov 26 11:24 shared
[2025-11-26 17:58:07] -rw-r--r-- 2 boincer umatlas    590107 Nov 26 11:24 input.tar.gz
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas         0 Nov 26 11:24 boinc_lockfile
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas      2786 Nov 26 11:24 pandaJob.out
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas        57 Nov 26 11:24 setup.sh.local
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas    991545 Nov 26 11:24 agis_schedconf.cvmfs.json
[2025-11-26 17:58:07] drwx------ 5 boincer umatlas      4096 Nov 26 11:24 pilot3
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas       532 Nov 26 17:48 boinc_task_state.xml
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas 921798069 Nov 26 17:56 HITS.47556161._001959.pool.root.1
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas      5957 Nov 26 17:57 init_data.xml
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas      1060 Nov 26 17:57 memory_monitor_summary.json
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas   1516240 Nov 26 17:57 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas   2153450 Nov 26 17:57 log.47556161._001959.job.log.tgz.1
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas        95 Nov 26 17:57 pilot_heartbeat.json
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas      8682 Nov 26 17:57 heartbeat.json
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 17:57 boinc_mmap_file
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas        29 Nov 26 17:57 wrapper_checkpoint.txt
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas      4624 Nov 26 17:58 pilotlog.txt
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas   3290209 Nov 26 17:58 log.47556161._001959.job.log.1
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas       353 Nov 26 17:58 output.list
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas       620 Nov 26 17:58 runtime_log
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas   5468160 Nov 26 17:58 result.tar.gz
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 17:58 runtime_log.err
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas       669 Nov 26 17:58 8MzNDm6WBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyZJKDmgueK7m.diag
[2025-11-26 17:58:07] -rw-r--r-- 1 boincer umatlas     21211 Nov 26 17:58 stderr.txt
[2025-11-26 17:58:07] HITS file was successfully produced:
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas 921798069 Nov 26 17:56 shared/HITS.pool.root.1
[2025-11-26 17:58:07]  *** Contents of shared directory: ***
[2025-11-26 17:58:07] total 1308820
[2025-11-26 17:58:07] -rw-r--r-- 2 boincer umatlas 412345559 Nov 26 11:24 ATLAS.root_0
[2025-11-26 17:58:07] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 11:24 start_atlas.sh
[2025-11-26 17:58:07] -rw-r--r-- 2 boincer umatlas    590107 Nov 26 11:24 input.tar.gz
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas 921798069 Nov 26 17:56 HITS.pool.root.1
[2025-11-26 17:58:07] -rw------- 1 boincer umatlas   5468160 Nov 26 17:58 result.tar.gz
17:58:08 (24297): run_atlas exited; CPU time 269297.663593
17:58:08 (24297): called boinc_finish(0)

</stderr_txt>
]]>

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