Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:54:18 (1171175): wrapper (7.7.26015): starting
15:54:18 (1171175): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 15:54:18] Arguments: --nthreads 9
[2025-11-26 15:54:18] Threads: 9
[2025-11-26 15:54:18] Checking for CVMFS
[2025-11-26 15:54:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:54:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:54:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:54:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:54:20] 2.13.2.0 12166 36348 298024 153334 1 598 40797927 40960001 18178 16776704 0 67734982 99.728 41152121 33295 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 15:54:20] CVMFS is ok
[2025-11-26 15:54:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:54:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:54:20] Further information can be found at the LHC@home message board.
[2025-11-26 15:54:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:54:20] Checking for apptainer binary...
[2025-11-26 15:54:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:54:20] Running /usr/bin/apptainer --version
[2025-11-26 15:54:20] apptainer version 1.4.4-1.el9
[2025-11-26 15:54:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:54:21] c-211-33-1.aglt2.org
[2025-11-26 15:54:21] apptainer works
[2025-11-26 15:54:21] Set ATHENA_PROC_NUMBER=9
[2025-11-26 15:54:21] Set ATHENA_CORE_NUMBER=9
[2025-11-26 15:54:21] Starting ATLAS job with PandaID=6898041267
[2025-11-26 15:54:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:07:26]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:07:26] 2025-11-28 02:06:38,102 | INFO     | monitor loop #5974: job 0:6898041267 is in state 'finished'
[2025-11-27 21:07:26] 2025-11-28 02:06:38,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:07:26] 2025-11-28 02:06:40,650 | INFO     | monitor loop #5975: job 0:6898041267 is in state 'finished'
[2025-11-27 21:07:26] 2025-11-28 02:06:40,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:07:26] 2025-11-28 02:06:41,026 | INFO     | PID=1177523 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:07:26] 2025-11-28 02:06:41,027 | INFO     | .. there are 18 such processes running
[2025-11-27 21:07:26] 2025-11-28 02:06:42,028 | INFO     | time since job start (105099s) is within the limit (172800.0s)
[2025-11-27 21:07:26] 2025-11-28 02:06:43,162 | INFO     | monitor loop #5976: job 0:6898041267 is in state 'finished'
[2025-11-27 21:07:26] 2025-11-28 02:06:43,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:07:26] 2025-11-28 02:06:44,035 | INFO     | time since job start (105101s) is within the limit (172800.0s)
[2025-11-27 21:07:26] 2025-11-28 02:06:45,687 | INFO     | monitor loop #5977: job 0:6898041267 is in state 'finished'
[2025-11-27 21:07:26] 2025-11-28 02:06:45,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:07:26] 2025-11-28 02:06:46,042 | INFO     | time since job start (105103s) is within the limit (172800.0s)
[2025-11-27 21:07:26] 2025-11-28 02:06:48,049 | INFO     | time since job start (105105s) is within the limit (172800.0s)
[2025-11-27 21:07:26] 2025-11-28 02:06:48,221 | INFO     | monitor loop #5978: job 0:6898041267 is in state 'finished'
[2025-11-27 21:07:26] 2025-11-28 02:06:48,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:07:26] 2025-11-28 02:06:49,960 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 21:07:26] 2025-11-28 02:06:49,974 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2516.315072916667
[2025-11-27 21:07:26] 2025-11-28 02:06:49,993 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898041267/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:07:26] 2025-11-28 02:06:49,994 | INFO     | extracted standard info from prmon json
[2025-11-27 21:07:26] 2025-11-28 02:06:49,994 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:07:26] 2025-11-28 02:06:49,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:07:26] 2025-11-28 02:06:50,026 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:07:26] 2025-11-28 02:06:50,029 | INFO     | sum of square deviations: 1580575667565.3594
[2025-11-27 21:07:26] 2025-11-28 02:06:50,062 | INFO     | time since job start (105107s) is within the limit (172800.0s)
[2025-11-27 21:07:26] 2025-11-28 02:06:50,088 | INFO     | sum of deviations: 4678189003689.613
[2025-11-27 21:07:26] 2025-11-28 02:06:50,089 | INFO     | mean x: 1764243075.2701917
[2025-11-27 21:07:26] 2025-11-28 02:06:50,089 | INFO     | mean y: 3092896.8675188846
[2025-11-27 21:07:26] 2025-11-28 02:06:50,089 | INFO     | intersect: -5218715032.946929
[2025-11-27 21:07:26] 2025-11-28 02:06:50,091 | INFO     | chi2: 22.125777562710773
[2025-11-27 21:07:26] 2025-11-28 02:06:50,094 | INFO     | sum of square deviations: 1566841632763.9233
[2025-11-27 21:07:26] 2025-11-28 02:06:50,153 | INFO     | sum of deviations: 5324337912303.798
[2025-11-27 21:07:26] 2025-11-28 02:06:50,153 | INFO     | mean x: 1764242922.782634
[2025-11-27 21:07:26] 2025-11-28 02:06:50,154 | INFO     | mean y: 3100069.677738928
[2025-11-27 21:07:26] 2025-11-28 02:06:50,154 | INFO     | intersect: -5992033888.892885
[2025-11-27 21:07:26] 2025-11-28 02:06:50,156 | INFO     | chi2: 18.582161002233075
[2025-11-27 21:07:26] 2025-11-28 02:06:50,156 | INFO     | current chi2=18.582161002233075 (change=16.01578317613506 %)
[2025-11-27 21:07:26] 2025-11-28 02:06:50,156 | INFO     | right removable region: 1715
[2025-11-27 21:07:26] 2025-11-28 02:06:50,159 | INFO     | sum of square deviations: 1566837149873.9246
[2025-11-27 21:07:26] 2025-11-28 02:06:50,218 | INFO     | sum of deviations: 3970362303009.5054
[2025-11-27 21:07:26] 2025-11-28 02:06:50,218 | INFO     | mean x: 1764243227.782634
[2025-11-27 21:07:26] 2025-11-28 02:06:50,218 | INFO     | mean y: 3100753.567016317
[2025-11-27 21:07:26] 2025-11-28 02:06:50,219 | INFO     | intersect: -4467488168.511844
[2025-11-27 21:07:26] 2025-11-28 02:06:50,221 | INFO     | chi2: 18.43924889529156
[2025-11-27 21:07:26] 2025-11-28 02:06:50,221 | INFO     | current chi2=18.43924889529156 (change=16.66169090315827 %)
[2025-11-27 21:07:26] 2025-11-28 02:06:50,221 | INFO     | left removable region: 10
[2025-11-27 21:07:26] 2025-11-28 02:06:50,223 | INFO     | sum of square deviations: 1536898517428.4888
[2025-11-27 21:07:26] 2025-11-28 02:06:50,281 | INFO     | sum of deviations: 4316416412586.727
[2025-11-27 21:07:26] 2025-11-28 02:06:50,282 | INFO     | mean x: 1764243197.3096774
[2025-11-27 21:07:26] 2025-11-28 02:06:50,282 | INFO     | mean y: 3113940.786510264
[2025-11-27 21:07:26] 2025-11-28 02:06:50,282 | INFO     | intersect: -4951805467.557774
[2025-11-27 21:07:26] 2025-11-28 02:06:50,284 | INFO     | chi2: 13.03009356945655
[2025-11-27 21:07:26] 2025-11-28 02:06:50,284 | INFO     | current memory leak: 2.81 B/s (using 1705 data points, chi2=13.03)
[2025-11-27 21:07:26] 2025-11-28 02:06:50,287 | INFO     | could have reported an average CPU frequency of 2540 MHz (61 samples)
[2025-11-27 21:07:26] 2025-11-28 02:06:50,287 | INFO     | ..............................
[2025-11-27 21:07:26] 2025-11-28 02:06:50,287 | INFO     | . Timing measurements:
[2025-11-27 21:07:26] 2025-11-28 02:06:50,287 | INFO     | . get job = 0 s
[2025-11-27 21:07:26] 2025-11-28 02:06:50,287 | INFO     | . initial setup = 3 s
[2025-11-27 21:07:26] 2025-11-28 02:06:50,287 | INFO     | . payload setup = 26 s
[2025-11-27 21:07:26] 2025-11-28 02:06:50,287 | INFO     | . stage-in = 0 s
[2025-11-27 21:07:26] 2025-11-28 02:06:50,287 | INFO     | . payload execution = 104965 s
[2025-11-27 21:07:26] 2025-11-28 02:06:50,288 | INFO     | . stage-out = 21 s
[2025-11-27 21:07:26] 2025-11-28 02:06:50,288 | INFO     | . log creation = 10 s
[2025-11-27 21:07:26] 2025-11-28 02:06:50,288 | INFO     | ..............................
[2025-11-27 21:07:26] 2025-11-28 02:06:50,642 | INFO     | 
[2025-11-27 21:07:26] 2025-11-28 02:06:50,642 | INFO     | job summary report
[2025-11-27 21:07:26] 2025-11-28 02:06:50,642 | INFO     | --------------------------------------------------
[2025-11-27 21:07:26] 2025-11-28 02:06:50,642 | INFO     | PanDA job id: 6898041267
[2025-11-27 21:07:26] 2025-11-28 02:06:50,642 | INFO     | task id: 47556161
[2025-11-27 21:07:26] 2025-11-28 02:06:50,642 | INFO     | errors: (none)
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | pilot state: finished 
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | transexitcode: 0
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | exeerrorcode: 0
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | exeerrordiag: 
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | exitcode: 0
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | exitmsg: OK
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | cpuconsumptiontime: 293916 s
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | nevents: 1000
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | neventsw: 0
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | pid: 1192736
[2025-11-27 21:07:26] 2025-11-28 02:06:50,643 | INFO     | pgrp: 1192736
[2025-11-27 21:07:26] 2025-11-28 02:06:50,644 | INFO     | corecount: 9
[2025-11-27 21:07:26] 2025-11-28 02:06:50,644 | INFO     | event service: False
[2025-11-27 21:07:26] 2025-11-28 02:06:50,644 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284666, 35: 2284666, 104994: 2357803, 104995: 2357802, 105018: 2366852, 105019: 2366908, 105050: 2367
[2025-11-27 21:07:26] 2025-11-28 02:06:50,644 | INFO     | --------------------------------------------------
[2025-11-27 21:07:26] 2025-11-28 02:06:50,644 | INFO     | 
[2025-11-27 21:07:26] 2025-11-28 02:06:50,644 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 21:07:26] 2025-11-28 02:06:50,738 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,738 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,739 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,739 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,739 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,739 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,739 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,739 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,746 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,746 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,746 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:07:26] 2025-11-28 02:06:50,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,747 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:07:26] 2025-11-28 02:06:50,747 | INFO     | job 6898041267 has completed (purged errors)
[2025-11-27 21:07:26] 2025-11-28 02:06:50,747 | INFO     | overall cleanup function is called
[2025-11-27 21:07:26] 2025-11-28 02:06:51,824 | INFO     | --- collectZombieJob: --- 10, [1192736]
[2025-11-27 21:07:26] 2025-11-28 02:06:51,824 | INFO     | zombie collector waiting for pid 1192736
[2025-11-27 21:07:26] 2025-11-28 02:06:51,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:07:26] 2025-11-28 02:06:51,824 | INFO     | collected zombie processes
[2025-11-27 21:07:26] 2025-11-28 02:06:51,824 | INFO     | will attempt to kill all subprocesses of pid=1192736
[2025-11-27 21:07:26] 2025-11-28 02:06:53,332 | INFO     | process IDs to be killed: [1192736] (in reverse order)
[2025-11-27 21:07:26] 2025-11-28 02:06:54,065 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:07:26] 2025-11-28 02:06:54,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:07:26] 2025-11-28 02:06:54,099 | INFO     | did not find any defunct processes belonging to 1192736
[2025-11-27 21:07:26] 2025-11-28 02:06:54,218 | INFO     | did not find any defunct processes belonging to 1192736
[2025-11-27 21:07:26] 2025-11-28 02:06:54,257 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:07:26] 2025-11-28 02:06:54,262 | INFO     | ready for new job
[2025-11-27 21:07:26] 2025-11-28 02:06:54,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:07:26] 2025-11-28 02:06:54,318 | INFO     | ***************************************
[2025-11-27 21:07:26] 2025-11-28 02:06:54,318 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:07:26] 2025-11-28 02:06:54,344 | INFO     | ***************************************
[2025-11-27 21:07:26] 2025-11-28 02:06:54,344 | INFO     | 
[2025-11-27 21:07:26] 2025-11-28 02:06:54,368 | INFO     | architecture information:
[2025-11-27 21:07:26] 2025-11-28 02:06:54,391 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:07:26] 2025-11-28 02:06:54,506 | INFO     | cat /etc/os-release:
[2025-11-27 21:07:26] NAME="CentOS Linux"
[2025-11-27 21:07:26] VERSION="7 (Core)"
[2025-11-27 21:07:26] ID="centos"
[2025-11-27 21:07:26] ID_LIKE="rhel fedora"
[2025-11-27 21:07:26] VERSION_ID="7"
[2025-11-27 21:07:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:07:26] ANSI_COLOR="0;31"
[2025-11-27 21:07:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:07:26] HOME_URL="https://www.centos.org/"
[2025-11-27 21:07:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:07:26] 
[2025-11-27 21:07:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:07:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:07:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:07:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:07:26] 
[2025-11-27 21:07:26] 2025-11-28 02:06:54,507 | INFO     | ***************************************
[2025-11-27 21:07:26] 2025-11-28 02:06:55,010 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 21:07:26] 2025-11-28 02:06:55,083 | INFO     | sufficient remaining disk space (120838946816 B)
[2025-11-27 21:07:26] 2025-11-28 02:06:55,083 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:07:26] 2025-11-28 02:06:55,084 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:07:26] 2025-11-28 02:06:55,084 | INFO     | update_server=False
[2025-11-27 21:07:26] 2025-11-28 02:06:55,084 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:07:26] 2025-11-28 02:06:55,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:07:26] 2025-11-28 02:06:55,085 | INFO     | aborting loop
[2025-11-27 21:07:26] 2025-11-28 02:06:55,085 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:07:26] 2025-11-28 02:06:55,148 | INFO     | all data control threads have been joined
[2025-11-27 21:07:26] 2025-11-28 02:06:55,382 | INFO     | all job control threads have been joined
[2025-11-27 21:07:26] 2025-11-28 02:06:55,672 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:07:26] 2025-11-28 02:06:56,091 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,107 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,154 | INFO     | [data] control thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,239 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,240 | INFO     | [job] validate thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,274 | INFO     | all payload control threads have been joined
[2025-11-27 21:07:26] 2025-11-28 02:06:56,304 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,305 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,388 | INFO     | [job] control thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,480 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,678 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,886 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,886 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:56,894 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:57,101 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:57,280 | INFO     | [payload] control thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:06:57,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:07:26] 2025-11-28 02:07:01,638 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:07:26] 2025-11-28 02:07:14,830 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:07:26] 2025-11-28 02:07:15,116 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899073439552)>', '<ExcThread(monitor, started 139898711414528)>']
[2025-11-27 21:07:26] 2025-11-28 02:07:20,143 | INFO     | all workflow threads have been joined
[2025-11-27 21:07:26] 2025-11-28 02:07:20,143 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:07:26] 2025-11-28 02:07:20,147 | INFO     | traces error code: 0
[2025-11-27 21:07:26] 2025-11-28 02:07:20,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:07:26] 2025-11-28 02:07:24,739 | INFO     | PID=1177523 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:07:26] 2025-11-28 02:07:24,739 | INFO     | .. there are 18 such processes running
[2025-11-27 21:07:26] 2025-11-28 02:07:24,745 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:07:26] 2025-11-28 02:07:24,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:07:26] 2025-11-28 02:07:24,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:07:26] 2025-11-28 02:07:24,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:07:26] 2025-11-28 02:07:24,746 | INFO     | [monitor] control thread has ended
[2025-11-27 21:07:26] 2025-11-28 02:07:25,240 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:07:26] 2025-11-28 02:07:25,280 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:07:26] 2025-11-28 02:07:25,316 [wrapper] pilotpid: 1177523
[2025-11-27 21:07:26] 2025-11-28 02:07:25,358 [wrapper] Pilot exit status: 0
[2025-11-27 21:07:26] 2025-11-28 02:07:25,449 [wrapper] pandaids: 6898041267
[2025-11-27 21:07:26] 2025-11-28 02:07:25,656 [wrapper] cleanup supervisor_pilot  226699 1177524
[2025-11-27 21:07:26] 2025-11-28 02:07:25,660 [wrapper] Test setup, not cleaning
[2025-11-27 21:07:26] 2025-11-28 02:07:25,663 [wrapper] apfmon messages muted
[2025-11-27 21:07:26] 2025-11-28 02:07:25,666 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:07:26] 2025-11-28 02:07:25,684 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:07:26]  *** Error codes and diagnostics ***
[2025-11-27 21:07:26]     "exeErrorCode": 0,
[2025-11-27 21:07:26]     "exeErrorDiag": "",
[2025-11-27 21:07:26]     "pilotErrorCode": 0,
[2025-11-27 21:07:26]     "pilotErrorDiag": "",
[2025-11-27 21:07:26]  *** Listing of results directory ***
[2025-11-27 21:07:26] total 1348624
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 22:12 queuedata.json
[2025-11-27 21:07:26] -rwx------. 1 boincer umatlas     36292 Nov 25 22:13 runpilot2-wrapper.sh
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas       100 Nov 26 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:07:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 15:54 run_atlas
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas       105 Nov 26 15:54 job.xml
[2025-11-27 21:07:26] -rw-r--r--. 2 boincer umatlas 412174478 Nov 26 15:54 EVNT.47483658._002419.pool.root.1
[2025-11-27 21:07:26] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 15:54 input.tar.gz
[2025-11-27 21:07:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:54 start_atlas.sh
[2025-11-27 21:07:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 15:54 shared
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas         0 Nov 26 15:54 boinc_lockfile
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 15:54 pandaJob.out
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas        57 Nov 26 15:54 setup.sh.local
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas    991538 Nov 26 15:54 agis_schedconf.cvmfs.json
[2025-11-27 21:07:26] drwx------. 5 boincer umatlas      4096 Nov 26 15:55 pilot3
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:24 boinc_task_state.xml
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 21:00 init_data.xml
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas 933761106 Nov 27 21:04 HITS.47556161._004018.pool.root.1
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas      1076 Nov 27 21:05 memory_monitor_summary.json
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas   1516240 Nov 27 21:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas   2754724 Nov 27 21:06 log.47556161._004018.job.log.tgz.1
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas      8637 Nov 27 21:06 heartbeat.json
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas        95 Nov 27 21:07 pilot_heartbeat.json
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas       823 Nov 27 21:07 pilotlog.txt
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas  12812547 Nov 27 21:07 log.47556161._004018.job.log.1
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 21:07 boinc_mmap_file
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas        29 Nov 27 21:07 wrapper_checkpoint.txt
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas       353 Nov 27 21:07 output.list
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas       620 Nov 27 21:07 runtime_log
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas  15585280 Nov 27 21:07 result.tar.gz
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas      9354 Nov 27 21:07 runtime_log.err
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas       665 Nov 27 21:07 Ke6KDmf9Ki8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmqJKDmTCmtmm.diag
[2025-11-27 21:07:26] -rw-r--r--. 1 boincer umatlas     21904 Nov 27 21:07 stderr.txt
[2025-11-27 21:07:26] HITS file was successfully produced:
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas 933761106 Nov 27 21:04 shared/HITS.pool.root.1
[2025-11-27 21:07:26]  *** Contents of shared directory: ***
[2025-11-27 21:07:26] total 1330220
[2025-11-27 21:07:26] -rw-r--r--. 2 boincer umatlas 412174478 Nov 26 15:54 ATLAS.root_0
[2025-11-27 21:07:26] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 15:54 input.tar.gz
[2025-11-27 21:07:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 15:54 start_atlas.sh
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas 933761106 Nov 27 21:04 HITS.pool.root.1
[2025-11-27 21:07:26] -rw-------. 1 boincer umatlas  15585280 Nov 27 21:07 result.tar.gz
21:07:28 (1171175): run_atlas exited; CPU time 296815.952827
21:07:28 (1171175): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN