Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:46:42 (781723): wrapper (7.7.26015): starting
13:46:42 (781723): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:46:42] Arguments: --nthreads 8
[2025-11-26 13:46:42] Threads: 8
[2025-11-26 13:46:42] Checking for CVMFS
[2025-11-26 13:46:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:46:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:46:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:47:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:47:03] 2.13.2.0 8058 36217 279568 153331 3 164 34332968 40960000 12672 16776704 0 38730746 99.718 26943256 35464 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 13:47:03] CVMFS is ok
[2025-11-26 13:47:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:47:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:47:03] Further information can be found at the LHC@home message board.
[2025-11-26 13:47:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:47:03] Checking for apptainer binary...
[2025-11-26 13:47:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:47:03] Running /usr/bin/apptainer --version
[2025-11-26 13:47:03] apptainer version 1.4.4-1.el9
[2025-11-26 13:47:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:47:03] c-210-33-3.aglt2.org
[2025-11-26 13:47:03] apptainer works
[2025-11-26 13:47:03] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:47:03] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:47:04] Starting ATLAS job with PandaID=6897139422
[2025-11-26 13:47:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:05:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:05:06] 2025-11-27 18:04:07,005 | INFO     | time since job start (83803s) is within the limit (172800.0s)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,220 | INFO     | monitor loop #5208: job 0:6897139422 is in state 'finished'
[2025-11-27 13:05:06] 2025-11-27 18:04:08,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,416 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 13:05:06] 2025-11-27 18:04:08,424 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2653.771214285714
[2025-11-27 13:05:06] 2025-11-27 18:04:08,434 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897139422/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,436 | INFO     | extracted standard info from prmon json
[2025-11-27 13:05:06] 2025-11-27 18:04:08,436 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:05:06] 2025-11-27 18:04:08,436 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:05:06] 2025-11-27 18:04:08,459 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:05:06] 2025-11-27 18:04:08,461 | INFO     | sum of square deviations: 802649753342.6973
[2025-11-27 13:05:06] 2025-11-27 18:04:08,496 | INFO     | sum of deviations: 2736337828905.086
[2025-11-27 13:05:06] 2025-11-27 18:04:08,496 | INFO     | mean x: 1764224741.175528
[2025-11-27 13:05:06] 2025-11-27 18:04:08,496 | INFO     | mean y: 3013381.8834668607
[2025-11-27 13:05:06] 2025-11-27 18:04:08,497 | INFO     | intersect: -6011459154.692195
[2025-11-27 13:05:06] 2025-11-27 18:04:08,498 | INFO     | chi2: 9.526862355908111
[2025-11-27 13:05:06] 2025-11-27 18:04:08,500 | INFO     | sum of square deviations: 793914770452.0939
[2025-11-27 13:05:06] 2025-11-27 18:04:08,528 | INFO     | sum of deviations: 3210469191791.816
[2025-11-27 13:05:06] 2025-11-27 18:04:08,528 | INFO     | mean x: 1764224588.6871345
[2025-11-27 13:05:06] 2025-11-27 18:04:08,528 | INFO     | mean y: 3021660.244883041
[2025-11-27 13:05:06] 2025-11-27 18:04:08,529 | INFO     | intersect: -7131231159.0549555
[2025-11-27 13:05:06] 2025-11-27 18:04:08,530 | INFO     | chi2: 6.489098816451902
[2025-11-27 13:05:06] 2025-11-27 18:04:08,530 | INFO     | current chi2=6.489098816451902 (change=31.886296095926397 %)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,531 | INFO     | sum of square deviations: 785242999690.0875
[2025-11-27 13:05:06] 2025-11-27 18:04:08,549 | INFO     | sum of deviations: 3499699432962.0127
[2025-11-27 13:05:06] 2025-11-27 18:04:08,550 | INFO     | mean x: 1764224436.1951578
[2025-11-27 13:05:06] 2025-11-27 18:04:08,550 | INFO     | mean y: 3026744.819515774
[2025-11-27 13:05:06] 2025-11-27 18:04:08,550 | INFO     | intersect: -7859832601.149462
[2025-11-27 13:05:06] 2025-11-27 18:04:08,550 | INFO     | chi2: 5.2202930190083965
[2025-11-27 13:05:06] 2025-11-27 18:04:08,550 | INFO     | current chi2=5.2202930190083965 (change=19.552881429801694 %)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,551 | INFO     | right removable region: 1362
[2025-11-27 13:05:06] 2025-11-27 18:04:08,551 | INFO     | sum of square deviations: 793912194366.467
[2025-11-27 13:05:06] 2025-11-27 18:04:08,570 | INFO     | sum of deviations: 2328001509879.5044
[2025-11-27 13:05:06] 2025-11-27 18:04:08,570 | INFO     | mean x: 1764224893.6864035
[2025-11-27 13:05:06] 2025-11-27 18:04:08,570 | INFO     | mean y: 3020502.956871345
[2025-11-27 13:05:06] 2025-11-27 18:04:08,570 | INFO     | intersect: -5170244557.603622
[2025-11-27 13:05:06] 2025-11-27 18:04:08,571 | INFO     | chi2: 7.1389579655194115
[2025-11-27 13:05:06] 2025-11-27 18:04:08,571 | INFO     | current chi2=7.1389579655194115 (change=25.064961591555207 %)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,572 | INFO     | sum of square deviations: 785238431762.6959
[2025-11-27 13:05:06] 2025-11-27 18:04:08,602 | INFO     | sum of deviations: 2223860302640.4014
[2025-11-27 13:05:06] 2025-11-27 18:04:08,603 | INFO     | mean x: 1764225046.1958914
[2025-11-27 13:05:06] 2025-11-27 18:04:08,603 | INFO     | mean y: 3022333.7512839325
[2025-11-27 13:05:06] 2025-11-27 18:04:08,603 | INFO     | intersect: -4993409178.587945
[2025-11-27 13:05:06] 2025-11-27 18:04:08,604 | INFO     | chi2: 7.0632153472946815
[2025-11-27 13:05:06] 2025-11-27 18:04:08,605 | INFO     | current chi2=7.0632153472946815 (change=1.060975825751612 %)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,605 | INFO     | left removable region: 20
[2025-11-27 13:05:06] 2025-11-27 18:04:08,607 | INFO     | sum of square deviations: 749503091774.4979
[2025-11-27 13:05:06] 2025-11-27 18:04:08,647 | INFO     | sum of deviations: 2894991193669.128
[2025-11-27 13:05:06] 2025-11-27 18:04:08,648 | INFO     | mean x: 1764225015.733234
[2025-11-27 13:05:06] 2025-11-27 18:04:08,648 | INFO     | mean y: 3039359.461251863
[2025-11-27 13:05:06] 2025-11-27 18:04:08,648 | INFO     | intersect: -6811363329.800973
[2025-11-27 13:05:06] 2025-11-27 18:04:08,649 | INFO     | chi2: 2.4991343873366185
[2025-11-27 13:05:06] 2025-11-27 18:04:08,650 | INFO     | current memory leak: 3.86 B/s (using 1342 data points, chi2=2.50)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,653 | INFO     | could have reported an average CPU frequency of 2781 MHz (49 samples)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,653 | INFO     | ..............................
[2025-11-27 13:05:06] 2025-11-27 18:04:08,654 | INFO     | . Timing measurements:
[2025-11-27 13:05:06] 2025-11-27 18:04:08,654 | INFO     | . get job = 0 s
[2025-11-27 13:05:06] 2025-11-27 18:04:08,654 | INFO     | . initial setup = 3 s
[2025-11-27 13:05:06] 2025-11-27 18:04:08,654 | INFO     | . payload setup = 11 s
[2025-11-27 13:05:06] 2025-11-27 18:04:08,654 | INFO     | . stage-in = 0 s
[2025-11-27 13:05:06] 2025-11-27 18:04:08,654 | INFO     | . payload execution = 83745 s
[2025-11-27 13:05:06] 2025-11-27 18:04:08,654 | INFO     | . stage-out = 5 s
[2025-11-27 13:05:06] 2025-11-27 18:04:08,654 | INFO     | . log creation = 1 s
[2025-11-27 13:05:06] 2025-11-27 18:04:08,655 | INFO     | ..............................
[2025-11-27 13:05:06] 2025-11-27 18:04:08,852 | INFO     | 
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | job summary report
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | --------------------------------------------------
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | PanDA job id: 6897139422
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | task id: 47556161
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | errors: (none)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | pilot state: finished 
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | transexitcode: 0
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | exeerrorcode: 0
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | exeerrordiag: 
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | exitcode: 0
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | exitmsg: OK
[2025-11-27 13:05:06] 2025-11-27 18:04:08,853 | INFO     | cpuconsumptiontime: 253506 s
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | nevents: 1000
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | neventsw: 0
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | pid: 794454
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | pgrp: 794454
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | corecount: 8
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | event service: False
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | sizes: {0: 2283437, 1: 2284293, 2: 2284293, 12: 2284321, 13: 2284611, 23: 2284667, 83760: 2348881, 83766: 2357931, 83775: 2358121}
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | --------------------------------------------------
[2025-11-27 13:05:06] 2025-11-27 18:04:08,854 | INFO     | 
[2025-11-27 13:05:06] 2025-11-27 18:04:08,855 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 13:05:06] 2025-11-27 18:04:08,884 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,884 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,886 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,886 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,886 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:05:06] 2025-11-27 18:04:08,886 | INFO     | job 6897139422 has completed (purged errors)
[2025-11-27 13:05:06] 2025-11-27 18:04:08,887 | INFO     | overall cleanup function is called
[2025-11-27 13:05:06] 2025-11-27 18:04:09,907 | INFO     | --- collectZombieJob: --- 10, [794454]
[2025-11-27 13:05:06] 2025-11-27 18:04:09,908 | INFO     | zombie collector waiting for pid 794454
[2025-11-27 13:05:06] 2025-11-27 18:04:09,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:05:06] 2025-11-27 18:04:09,909 | INFO     | collected zombie processes
[2025-11-27 13:05:06] 2025-11-27 18:04:09,909 | INFO     | will attempt to kill all subprocesses of pid=794454
[2025-11-27 13:05:06] 2025-11-27 18:04:10,281 | INFO     | process IDs to be killed: [794454] (in reverse order)
[2025-11-27 13:05:06] 2025-11-27 18:04:10,383 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:05:06] 2025-11-27 18:04:10,384 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:05:06] 2025-11-27 18:04:10,393 | INFO     | did not find any defunct processes belonging to 794454
[2025-11-27 13:05:06] 2025-11-27 18:04:10,402 | INFO     | did not find any defunct processes belonging to 794454
[2025-11-27 13:05:06] 2025-11-27 18:04:10,404 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:05:06] 2025-11-27 18:04:10,404 | INFO     | ready for new job
[2025-11-27 13:05:06] 2025-11-27 18:04:10,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:05:06] 2025-11-27 18:04:10,411 | INFO     | ***************************************
[2025-11-27 13:05:06] 2025-11-27 18:04:10,411 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:05:06] 2025-11-27 18:04:10,411 | INFO     | ***************************************
[2025-11-27 13:05:06] 2025-11-27 18:04:10,411 | INFO     | 
[2025-11-27 13:05:06] 2025-11-27 18:04:10,415 | INFO     | architecture information:
[2025-11-27 13:05:06] 2025-11-27 18:04:10,415 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:05:06] 2025-11-27 18:04:10,469 | INFO     | cat /etc/os-release:
[2025-11-27 13:05:06] NAME="CentOS Linux"
[2025-11-27 13:05:06] VERSION="7 (Core)"
[2025-11-27 13:05:06] ID="centos"
[2025-11-27 13:05:06] ID_LIKE="rhel fedora"
[2025-11-27 13:05:06] VERSION_ID="7"
[2025-11-27 13:05:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:05:06] ANSI_COLOR="0;31"
[2025-11-27 13:05:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:05:06] HOME_URL="https://www.centos.org/"
[2025-11-27 13:05:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:05:06] 
[2025-11-27 13:05:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:05:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:05:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:05:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:05:06] 
[2025-11-27 13:05:06] 2025-11-27 18:04:10,469 | INFO     | ***************************************
[2025-11-27 13:05:06] 2025-11-27 18:04:10,972 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 13:05:06] 2025-11-27 18:04:11,002 | INFO     | sufficient remaining disk space (71169998848 B)
[2025-11-27 13:05:06] 2025-11-27 18:04:11,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:05:06] 2025-11-27 18:04:11,003 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:05:06] 2025-11-27 18:04:11,003 | INFO     | update_server=False
[2025-11-27 13:05:06] 2025-11-27 18:04:11,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:05:06] 2025-11-27 18:04:11,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:05:06] 2025-11-27 18:04:11,004 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:05:06] 2025-11-27 18:04:11,302 | INFO     | all data control threads have been joined
[2025-11-27 13:05:06] 2025-11-27 18:04:11,457 | INFO     | all payload control threads have been joined
[2025-11-27 13:05:06] 2025-11-27 18:04:11,660 | INFO     | all job control threads have been joined
[2025-11-27 13:05:06] 2025-11-27 18:04:11,732 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:05:06] 2025-11-27 18:04:11,733 | INFO     | aborting loop
[2025-11-27 13:05:06] 2025-11-27 18:04:12,019 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,231 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,252 | INFO     | [job] validate thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,255 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,263 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,309 | INFO     | [data] control thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,464 | INFO     | [payload] control thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,667 | INFO     | [job] control thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,719 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,735 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:12,829 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:13,023 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:13,396 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:13,567 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:13,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:05:06] 2025-11-27 18:04:14,884 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:15,014 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:05:06] 2025-11-27 18:04:40,474 | INFO     | PID=786722 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 13:05:06] 2025-11-27 18:04:40,475 | INFO     | .. there are 10 such processes running
[2025-11-27 13:05:06] 2025-11-27 18:04:40,483 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:05:06] 2025-11-27 18:04:40,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:05:06] 2025-11-27 18:04:40,484 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:05:06] 2025-11-27 18:04:56,159 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:05:06] 2025-11-27 18:04:57,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195398018880)>', '<ExcThread(monitor, started 140195124975360)>']
[2025-11-27 13:05:06] 2025-11-27 18:04:58,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:05:06] 2025-11-27 18:04:58,596 | INFO     | [monitor] control thread has ended
[2025-11-27 13:05:06] 2025-11-27 18:05:02,841 | INFO     | all workflow threads have been joined
[2025-11-27 13:05:06] 2025-11-27 18:05:02,842 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:05:06] 2025-11-27 18:05:02,842 | INFO     | traces error code: 0
[2025-11-27 13:05:06] 2025-11-27 18:05:02,842 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:05:06] 2025-11-27 18:05:04,167 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:05:06] 2025-11-27 18:05:04,191 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:05:06] 2025-11-27 18:05:04,211 [wrapper] pilotpid: 786722
[2025-11-27 13:05:06] 2025-11-27 18:05:04,229 [wrapper] Pilot exit status: 0
[2025-11-27 13:05:06] 2025-11-27 18:05:04,389 [wrapper] pandaids: 6897139422
[2025-11-27 13:05:06] 2025-11-27 18:05:04,601 [wrapper] cleanup supervisor_pilot 2946483 786723
[2025-11-27 13:05:06] 2025-11-27 18:05:04,642 [wrapper] Test setup, not cleaning
[2025-11-27 13:05:06] 2025-11-27 18:05:04,665 [wrapper] apfmon messages muted
[2025-11-27 13:05:06] 2025-11-27 18:05:04,669 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:05:06] 2025-11-27 18:05:04,674 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:05:06]  *** Error codes and diagnostics ***
[2025-11-27 13:05:06]     "exeErrorCode": 0,
[2025-11-27 13:05:06]     "exeErrorDiag": "",
[2025-11-27 13:05:06]     "pilotErrorCode": 0,
[2025-11-27 13:05:06]     "pilotErrorDiag": "",
[2025-11-27 13:05:06]  *** Listing of results directory ***
[2025-11-27 13:05:06] total 1324808
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 13:05:06] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas       100 Nov 26 13:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:05:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 13:46 run_atlas
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas       105 Nov 26 13:46 job.xml
[2025-11-27 13:05:06] -rw-r--r--. 2 boincer umatlas 410918981 Nov 26 13:46 EVNT.47483658._002177.pool.root.1
[2025-11-27 13:05:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:46 start_atlas.sh
[2025-11-27 13:05:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 13:46 shared
[2025-11-27 13:05:06] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 13:46 input.tar.gz
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas         0 Nov 26 13:46 boinc_lockfile
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 13:47 pandaJob.out
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas        57 Nov 26 13:47 setup.sh.local
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas    991522 Nov 26 13:47 agis_schedconf.cvmfs.json
[2025-11-27 13:05:06] drwx------. 5 boincer umatlas      4096 Nov 26 13:47 pilot3
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas       533 Nov 27 12:26 boinc_task_state.xml
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas 915403751 Nov 27 13:03 HITS.47556161._001609.pool.root.1
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas      1057 Nov 27 13:03 memory_monitor_summary.json
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:03 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas   2418795 Nov 27 13:03 log.47556161._001609.job.log.tgz.1
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas      8619 Nov 27 13:04 heartbeat.json
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 13:04 init_data.xml
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas        95 Nov 27 13:04 pilot_heartbeat.json
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas      4823 Nov 27 13:05 pilotlog.txt
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:05 boinc_mmap_file
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:05 wrapper_checkpoint.txt
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas  10757001 Nov 27 13:05 log.47556161._001609.job.log.1
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas       353 Nov 27 13:05 output.list
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:05 runtime_log
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas  13199360 Nov 27 13:05 result.tar.gz
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 13:05 runtime_log.err
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas       662 Nov 27 13:05 7nfKDmUWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlTMKDm2DpwBn.diag
[2025-11-27 13:05:06] -rw-r--r--. 1 boincer umatlas     21339 Nov 27 13:05 stderr.txt
[2025-11-27 13:05:06] HITS file was successfully produced:
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas 915403751 Nov 27 13:03 shared/HITS.pool.root.1
[2025-11-27 13:05:06]  *** Contents of shared directory: ***
[2025-11-27 13:05:06] total 1308736
[2025-11-27 13:05:06] -rw-r--r--. 2 boincer umatlas 410918981 Nov 26 13:46 ATLAS.root_0
[2025-11-27 13:05:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:46 start_atlas.sh
[2025-11-27 13:05:06] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 13:46 input.tar.gz
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas 915403751 Nov 27 13:03 HITS.pool.root.1
[2025-11-27 13:05:06] -rw-------. 1 boincer umatlas  13199360 Nov 27 13:05 result.tar.gz
13:05:07 (781723): run_atlas exited; CPU time 254772.222134
13:05:07 (781723): called boinc_finish(0)

</stderr_txt>
]]>

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