Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:09:36 (263803): wrapper (7.7.26015): starting
17:09:36 (263803): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 17:09:36] Arguments: --nthreads 3
[2025-11-26 17:09:36] Threads: 3
[2025-11-26 17:09:36] Checking for CVMFS
[2025-11-26 17:09:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:09:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:09:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:11:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:11:29] 2.9.2.0 2184780 999 73900 153326 1 88 35694122 36864000 0 130560 0 6773125 99.999 33067 732 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 17:11:29] CVMFS is ok
[2025-11-26 17:11:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:11:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:11:29] Further information can be found at the LHC@home message board.
[2025-11-26 17:11:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:11:29] Checking for apptainer binary...
[2025-11-26 17:11:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:11:29] Running /usr/bin/apptainer --version
[2025-11-26 17:11:29] apptainer version 1.4.1-1.1
[2025-11-26 17:11:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:11:29] thA335
[2025-11-26 17:11:29] apptainer works
[2025-11-26 17:11:29] Set ATHENA_PROC_NUMBER=3
[2025-11-26 17:11:29] Set ATHENA_CORE_NUMBER=3
[2025-11-26 17:11:29] Starting ATLAS job with PandaID=6897394677
[2025-11-26 17:11:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:15:47]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:15:47] 2025-11-26 16:14:55,858 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:15:47] 2025-11-26 16:14:55,858 | INFO     | update_server=False
[2025-11-26 17:15:47] 2025-11-26 16:14:55,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:15:47] 2025-11-26 16:14:55,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:15:47] 2025-11-26 16:14:56,044 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 17:15:47] 2025-11-26 16:14:56,044 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 17:15:47] 2025-11-26 16:14:56,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:15:47] 2025-11-26 16:14:56,045 | INFO     | will abort loop
[2025-11-26 17:15:47] 2025-11-26 16:14:56,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:15:47] 2025-11-26 16:14:56,234 | INFO     | all data control threads have been joined
[2025-11-26 17:15:47] 2025-11-26 16:14:56,541 | INFO     | all payload control threads have been joined
[2025-11-26 17:15:47] 2025-11-26 16:14:56,864 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:56,864 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,051 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,067 | INFO     | all job control threads have been joined
[2025-11-26 17:15:47] 2025-11-26 16:14:57,137 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,239 | INFO     | [data] control thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,374 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,484 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,512 | INFO     | [job] validate thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,547 | INFO     | [payload] control thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,562 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,608 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,655 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:57,957 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:58,073 | INFO     | [job] control thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:58,077 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:14:58,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:15:47] 2025-11-26 16:15:02,202 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:15:47] 2025-11-26 16:15:25,668 | INFO     | PID=267549 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 17:15:47] 2025-11-26 16:15:25,668 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:15:47] 2025-11-26 16:15:25,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:15:47] 2025-11-26 16:15:25,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:15:47] 2025-11-26 16:15:40,891 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:15:47] 2025-11-26 16:15:42,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523750938432)>', '<ExcThread(monitor, started 140523251681024)>']
[2025-11-26 17:15:47] 2025-11-26 16:15:42,759 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:15:47] 2025-11-26 16:15:42,760 | INFO     | [monitor] control thread has ended
[2025-11-26 17:15:47] 2025-11-26 16:15:47,098 | INFO     | all workflow threads have been joined
[2025-11-26 17:15:47] 2025-11-26 16:15:47,099 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:15:47] 2025-11-26 16:15:47,099 | INFO     | traces error code: 0
[2025-11-26 17:15:47] 2025-11-26 16:15:47,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:15:47] 2025-11-26 16:15:47,144 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:15:47] 2025-11-26 16:15:47,147 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:15:47] 2025-11-26 16:15:47,150 [wrapper] pilotpid: 267549
[2025-11-26 17:15:47] 2025-11-26 16:15:47,153 [wrapper] Pilot exit status: 0
[2025-11-26 17:15:47] 2025-11-26 16:15:47,161 [wrapper] pandaids: 6897394677
[2025-11-26 17:15:47] 2025-11-26 16:15:47,178 [wrapper] cleanup supervisor_pilot  267555 267550
[2025-11-26 17:15:47] 2025-11-26 16:15:47,181 [wrapper] Test setup, not cleaning
[2025-11-26 17:15:47] 2025-11-26 16:15:47,184 [wrapper] apfmon messages muted
[2025-11-26 17:15:47] 2025-11-26 16:15:47,186 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:15:47] 2025-11-26 16:15:47,188 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:15:47]  *** Error codes and diagnostics ***
[2025-11-26 17:15:47]     "exeErrorCode": 65,
[2025-11-26 17:15:47]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 17:15:47]     "pilotErrorCode": 1305,
[2025-11-26 17:15:47]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 17:15:47]  *** Listing of results directory ***
[2025-11-26 17:15:47] total 404832
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc      5112 Nov 25 17:55 queuedata.json
[2025-11-26 17:15:47] -rwx------ 1 boinc boinc     36292 Nov 25 17:56 runpilot2-wrapper.sh
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc       100 Nov 26 17:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:15:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 17:09 run_atlas
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc       105 Nov 26 17:09 job.xml
[2025-11-26 17:15:47] -rw-r--r-- 2 boinc boinc 410347747 Nov 26 17:09 EVNT.47483658._003103.pool.root.1
[2025-11-26 17:15:47] drwxrwx--x 2 boinc boinc      4096 Nov 26 17:09 shared
[2025-11-26 17:15:47] -rw-r--r-- 2 boinc boinc    590108 Nov 26 17:09 input.tar.gz
[2025-11-26 17:15:47] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:09 start_atlas.sh
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:09 boinc_setup_complete
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc      6196 Nov 26 17:09 init_data.xml
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:09 boinc_lockfile
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc      2785 Nov 26 17:11 pandaJob.out
[2025-11-26 17:15:47] -rw------- 1 boinc boinc    991855 Nov 26 17:11 agis_schedconf.cvmfs.json
[2025-11-26 17:15:47] -rw------- 1 boinc boinc   1516240 Nov 26 17:11 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:15:47] drwx------ 5 boinc boinc      4096 Nov 26 17:11 pilot3
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc       523 Nov 26 17:12 boinc_task_state.xml
[2025-11-26 17:15:47] -rw------- 1 boinc boinc       956 Nov 26 17:12 memory_monitor_summary.json
[2025-11-26 17:15:47] -rw------- 1 boinc boinc     56074 Nov 26 17:12 log.47556173._000816.job.log.tgz.1
[2025-11-26 17:15:47] -rw------- 1 boinc boinc        95 Nov 26 17:14 pilot_heartbeat.json
[2025-11-26 17:15:47] -rw------- 1 boinc boinc      8400 Nov 26 17:14 heartbeat.json
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc        22 Nov 26 17:15 wrapper_checkpoint.txt
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc      8192 Nov 26 17:15 boinc_mmap_file
[2025-11-26 17:15:47] -rw------- 1 boinc boinc      4937 Nov 26 17:15 pilotlog.txt
[2025-11-26 17:15:47] -rw------- 1 boinc boinc     93596 Nov 26 17:15 log.47556173._000816.job.log.1
[2025-11-26 17:15:47] -rw------- 1 boinc boinc       186 Nov 26 17:15 output.list
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc       620 Nov 26 17:15 runtime_log
[2025-11-26 17:15:47] -rw------- 1 boinc boinc    174080 Nov 26 17:15 result.tar.gz
[2025-11-26 17:15:47] -rw------- 1 boinc boinc       649 Nov 26 17:15 x0SMDm1VBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIWJKDmixEqDm.diag
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc      8744 Nov 26 17:15 runtime_log.err
[2025-11-26 17:15:47] -rw-r--r-- 1 boinc boinc      8117 Nov 26 17:15 stderr.txt
[2025-11-26 17:15:47] No HITS result produced
[2025-11-26 17:15:47]  *** Contents of shared directory: ***
[2025-11-26 17:15:47] total 401504
[2025-11-26 17:15:47] -rw-r--r-- 2 boinc boinc 410347747 Nov 26 17:09 ATLAS.root_0
[2025-11-26 17:15:47] -rw-r--r-- 2 boinc boinc    590108 Nov 26 17:09 input.tar.gz
[2025-11-26 17:15:47] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:09 start_atlas.sh
[2025-11-26 17:15:47] -rw------- 1 boinc boinc    174080 Nov 26 17:15 result.tar.gz
17:15:49 (263803): run_atlas exited; CPU time 31.672500
17:15:49 (263803): called boinc_finish(0)

</stderr_txt>
]]>

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