Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:58:20 (3804321): wrapper (7.7.26015): starting
13:58:20 (3804321): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:58:20] Arguments: --nthreads 8
[2025-11-26 13:58:20] Threads: 8
[2025-11-26 13:58:20] Checking for CVMFS
[2025-11-26 13:58:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:58:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:58:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:58:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:58:21] 2.13.3.0 11338 30306 256704 153331 1 948 32111424 32935937 42032 16776704 0 151884981 99.527 180437424 38489 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:58:21] CVMFS is ok
[2025-11-26 13:58:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:58:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:58:21] Further information can be found at the LHC@home message board.
[2025-11-26 13:58:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:58:21] Checking for apptainer binary...
[2025-11-26 13:58:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:58:21] Running /usr/bin/apptainer --version
[2025-11-26 13:58:21] apptainer version 1.4.4-1.el9
[2025-11-26 13:58:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:58:21] c7-3-17.aglt2.org
[2025-11-26 13:58:21] apptainer works
[2025-11-26 13:58:21] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:58:21] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:58:21] Starting ATLAS job with PandaID=6897139742
[2025-11-26 13:58:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:09:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:09:01] 2025-11-27 06:08:16,538 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:09:01] 2025-11-27 06:08:16,539 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:09:01] 2025-11-27 06:08:16,594 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:09:01] 2025-11-27 06:08:16,595 | INFO     | sum of square deviations: 88336707144.46205
[2025-11-27 01:09:01] 2025-11-27 06:08:16,632 | INFO     | sum of deviations: 230610605047.6441
[2025-11-27 01:09:01] 2025-11-27 06:08:16,632 | INFO     | mean x: 1764203604.6352584
[2025-11-27 01:09:01] 2025-11-27 06:08:16,632 | INFO     | mean y: 2847327.386018237
[2025-11-27 01:09:01] 2025-11-27 06:08:16,632 | INFO     | intersect: -4602758584.851988
[2025-11-27 01:09:01] 2025-11-27 06:08:16,633 | INFO     | chi2: 12.540686400543695
[2025-11-27 01:09:01] 2025-11-27 06:08:16,633 | INFO     | sum of square deviations: 86338376570.46866
[2025-11-27 01:09:01] 2025-11-27 06:08:16,651 | INFO     | sum of deviations: 456804192163.29974
[2025-11-27 01:09:01] 2025-11-27 06:08:16,656 | INFO     | mean x: 1764203452.143951
[2025-11-27 01:09:01] 2025-11-27 06:08:16,656 | INFO     | mean y: 2864586.379785605
[2025-11-27 01:09:01] 2025-11-27 06:08:16,656 | INFO     | intersect: -9331287441.72277
[2025-11-27 01:09:01] 2025-11-27 06:08:16,656 | INFO     | chi2: 8.991895357269158
[2025-11-27 01:09:01] 2025-11-27 06:08:16,657 | INFO     | current chi2=8.991895357269158 (change=28.298220128689938 %)
[2025-11-27 01:09:01] 2025-11-27 06:08:16,657 | INFO     | sum of square deviations: 84370418658.8745
[2025-11-27 01:09:01] 2025-11-27 06:08:16,674 | INFO     | sum of deviations: 706429198825.097
[2025-11-27 01:09:01] 2025-11-27 06:08:16,675 | INFO     | mean x: 1764203299.6527777
[2025-11-27 01:09:01] 2025-11-27 06:08:16,675 | INFO     | mean y: 2883927.75154321
[2025-11-27 01:09:01] 2025-11-27 06:08:16,675 | INFO     | intersect: -14768700039.103811
[2025-11-27 01:09:01] 2025-11-27 06:08:16,679 | INFO     | chi2: 4.920984885905373
[2025-11-27 01:09:01] 2025-11-27 06:08:16,680 | INFO     | current chi2=4.920984885905373 (change=45.27310772219798 %)
[2025-11-27 01:09:01] 2025-11-27 06:08:16,680 | INFO     | sum of square deviations: 82432600847.17902
[2025-11-27 01:09:01] 2025-11-27 06:08:16,692 | INFO     | sum of deviations: 865942066011.084
[2025-11-27 01:09:01] 2025-11-27 06:08:16,692 | INFO     | mean x: 1764203147.1617417
[2025-11-27 01:09:01] 2025-11-27 06:08:16,693 | INFO     | mean y: 2896453.7107309485
[2025-11-27 01:09:01] 2025-11-27 06:08:16,693 | INFO     | intersect: -18529792099.313076
[2025-11-27 01:09:01] 2025-11-27 06:08:16,693 | INFO     | chi2: 2.7754031646860358
[2025-11-27 01:09:01] 2025-11-27 06:08:16,701 | INFO     | current chi2=2.7754031646860358 (change=43.600656595485326 %)
[2025-11-27 01:09:01] 2025-11-27 06:08:16,702 | INFO     | sum of square deviations: 80524533930.21925
[2025-11-27 01:09:01] 2025-11-27 06:08:16,727 | INFO     | sum of deviations: 887772546158.6586
[2025-11-27 01:09:01] 2025-11-27 06:08:16,727 | INFO     | mean x: 1764202994.6645768
[2025-11-27 01:09:01] 2025-11-27 06:08:16,727 | INFO     | mean y: 2898188.4937304077
[2025-11-27 01:09:01] 2025-11-27 06:08:16,727 | INFO     | intersect: -19447211089.64683
[2025-11-27 01:09:01] 2025-11-27 06:08:16,728 | INFO     | chi2: 2.63590904526661
[2025-11-27 01:09:01] 2025-11-27 06:08:16,728 | INFO     | current chi2=2.63590904526661 (change=5.026084901622068 %)
[2025-11-27 01:09:01] 2025-11-27 06:08:16,728 | INFO     | right removable region: 637
[2025-11-27 01:09:01] 2025-11-27 06:08:16,729 | INFO     | sum of square deviations: 86337960795.755
[2025-11-27 01:09:01] 2025-11-27 06:08:16,762 | INFO     | sum of deviations: 44509253007.131805
[2025-11-27 01:09:01] 2025-11-27 06:08:16,763 | INFO     | mean x: 1764203757.1424196
[2025-11-27 01:09:01] 2025-11-27 06:08:16,763 | INFO     | mean y: 2861501.4609494642
[2025-11-27 01:09:01] 2025-11-27 06:08:16,763 | INFO     | intersect: -906627101.9187732
[2025-11-27 01:09:01] 2025-11-27 06:08:16,763 | INFO     | chi2: 10.136667760018968
[2025-11-27 01:09:01] 2025-11-27 06:08:16,764 | INFO     | current chi2=10.136667760018968 (change=19.169753263429843 %)
[2025-11-27 01:09:01] 2025-11-27 06:08:16,764 | INFO     | left removable region: 10
[2025-11-27 01:09:01] 2025-11-27 06:08:16,764 | INFO     | sum of square deviations: 76430390779.41614
[2025-11-27 01:09:01] 2025-11-27 06:08:16,789 | INFO     | sum of deviations: 655736524438.8082
[2025-11-27 01:09:01] 2025-11-27 06:08:16,789 | INFO     | mean x: 1764203269.167464
[2025-11-27 01:09:01] 2025-11-27 06:08:16,789 | INFO     | mean y: 2916623.3827751195
[2025-11-27 01:09:01] 2025-11-27 06:08:16,789 | INFO     | intersect: -15133111183.490797
[2025-11-27 01:09:01] 2025-11-27 06:08:16,794 | INFO     | chi2: 0.05841647461700305
[2025-11-27 01:09:01] 2025-11-27 06:08:16,794 | INFO     | current memory leak: 8.58 B/s (using 627 data points, chi2=0.06)
[2025-11-27 01:09:01] 2025-11-27 06:08:16,795 | INFO     | could have reported an average CPU frequency of 3095 MHz (26 samples)
[2025-11-27 01:09:01] 2025-11-27 06:08:16,795 | INFO     | ..............................
[2025-11-27 01:09:01] 2025-11-27 06:08:16,795 | INFO     | . Timing measurements:
[2025-11-27 01:09:01] 2025-11-27 06:08:16,795 | INFO     | . get job = 0 s
[2025-11-27 01:09:01] 2025-11-27 06:08:16,795 | INFO     | . initial setup = 3 s
[2025-11-27 01:09:01] 2025-11-27 06:08:16,795 | INFO     | . payload setup = 10 s
[2025-11-27 01:09:01] 2025-11-27 06:08:16,795 | INFO     | . stage-in = 0 s
[2025-11-27 01:09:01] 2025-11-27 06:08:16,795 | INFO     | . payload execution = 40111 s
[2025-11-27 01:09:01] 2025-11-27 06:08:16,796 | INFO     | . stage-out = 5 s
[2025-11-27 01:09:01] 2025-11-27 06:08:16,796 | INFO     | . log creation = 1 s
[2025-11-27 01:09:01] 2025-11-27 06:08:16,796 | INFO     | ..............................
[2025-11-27 01:09:01] 2025-11-27 06:08:17,076 | INFO     | 
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | job summary report
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | --------------------------------------------------
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | PanDA job id: 6897139742
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | task id: 47556161
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | errors: (none)
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | pilot state: finished 
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | transexitcode: 0
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | exeerrorcode: 0
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | exeerrordiag: 
[2025-11-27 01:09:01] 2025-11-27 06:08:17,077 | INFO     | exitcode: 0
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | exitmsg: OK
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | cpuconsumptiontime: 198511 s
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | nevents: 1000
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | neventsw: 0
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | pid: 3823265
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | pgrp: 3823265
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | corecount: 8
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | event service: False
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | sizes: {0: 2284094, 1: 2284293, 9: 2284555, 12: 2284583, 40123: 2328550, 40129: 2337544, 40131: 2337728, 40150: 2337974}
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | --------------------------------------------------
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | 
[2025-11-27 01:09:01] 2025-11-27 06:08:17,078 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 01:09:01] 2025-11-27 06:08:17,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,152 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,152 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,152 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,152 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,152 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,152 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,152 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,152 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,153 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:09:01] 2025-11-27 06:08:17,154 | INFO     | job 6897139742 has completed (purged errors)
[2025-11-27 01:09:01] 2025-11-27 06:08:17,154 | INFO     | overall cleanup function is called
[2025-11-27 01:09:01] 2025-11-27 06:08:18,177 | INFO     | --- collectZombieJob: --- 10, [3823265]
[2025-11-27 01:09:01] 2025-11-27 06:08:18,178 | INFO     | zombie collector waiting for pid 3823265
[2025-11-27 01:09:01] 2025-11-27 06:08:18,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:09:01] 2025-11-27 06:08:18,178 | INFO     | collected zombie processes
[2025-11-27 01:09:01] 2025-11-27 06:08:18,179 | INFO     | will attempt to kill all subprocesses of pid=3823265
[2025-11-27 01:09:01] 2025-11-27 06:08:20,002 | INFO     | process IDs to be killed: [3823265] (in reverse order)
[2025-11-27 01:09:01] 2025-11-27 06:08:20,465 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:09:01] 2025-11-27 06:08:20,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:09:01] 2025-11-27 06:08:20,575 | INFO     | did not find any defunct processes belonging to 3823265
[2025-11-27 01:09:01] 2025-11-27 06:08:20,639 | INFO     | did not find any defunct processes belonging to 3823265
[2025-11-27 01:09:01] 2025-11-27 06:08:20,644 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:09:01] 2025-11-27 06:08:20,644 | INFO     | ready for new job
[2025-11-27 01:09:01] 2025-11-27 06:08:20,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:09:01] 2025-11-27 06:08:20,647 | INFO     | ***************************************
[2025-11-27 01:09:01] 2025-11-27 06:08:20,651 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:09:01] 2025-11-27 06:08:20,651 | INFO     | ***************************************
[2025-11-27 01:09:01] 2025-11-27 06:08:20,652 | INFO     | 
[2025-11-27 01:09:01] 2025-11-27 06:08:20,661 | INFO     | architecture information:
[2025-11-27 01:09:01] 2025-11-27 06:08:20,661 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:09:01] 2025-11-27 06:08:20,860 | INFO     | cat /etc/os-release:
[2025-11-27 01:09:01] NAME="CentOS Linux"
[2025-11-27 01:09:01] VERSION="7 (Core)"
[2025-11-27 01:09:01] ID="centos"
[2025-11-27 01:09:01] ID_LIKE="rhel fedora"
[2025-11-27 01:09:01] VERSION_ID="7"
[2025-11-27 01:09:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:09:01] ANSI_COLOR="0;31"
[2025-11-27 01:09:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:09:01] HOME_URL="https://www.centos.org/"
[2025-11-27 01:09:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:09:01] 
[2025-11-27 01:09:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:09:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:09:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:09:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:09:01] 
[2025-11-27 01:09:01] 2025-11-27 06:08:20,860 | INFO     | ***************************************
[2025-11-27 01:09:01] 2025-11-27 06:08:21,366 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 01:09:01] 2025-11-27 06:08:21,472 | INFO     | sufficient remaining disk space (64213745664 B)
[2025-11-27 01:09:01] 2025-11-27 06:08:21,472 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:09:01] 2025-11-27 06:08:21,472 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:09:01] 2025-11-27 06:08:21,472 | INFO     | update_server=False
[2025-11-27 01:09:01] 2025-11-27 06:08:21,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:09:01] 2025-11-27 06:08:21,494 | INFO     | all job control threads have been joined
[2025-11-27 01:09:01] 2025-11-27 06:08:21,605 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:09:01] 2025-11-27 06:08:21,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:09:01] 2025-11-27 06:08:21,765 | INFO     | all data control threads have been joined
[2025-11-27 01:09:01] 2025-11-27 06:08:22,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:09:01] 2025-11-27 06:08:22,210 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:09:01] 2025-11-27 06:08:22,211 | INFO     | aborting loop
[2025-11-27 01:09:01] 2025-11-27 06:08:22,478 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:22,511 | INFO     | [job] control thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:22,533 | INFO     | [job] validate thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:22,647 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:22,775 | INFO     | [data] control thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:22,816 | INFO     | all payload control threads have been joined
[2025-11-27 01:09:01] 2025-11-27 06:08:22,819 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,032 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,050 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,216 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,221 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,372 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,418 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,620 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,820 | INFO     | [payload] control thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:23,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:25,747 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:09:01] 2025-11-27 06:08:50,900 | INFO     | PID=3810579 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 01:09:01] 2025-11-27 06:08:50,901 | INFO     | .. there are 62 such processes running
[2025-11-27 01:09:01] 2025-11-27 06:08:50,901 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:09:01] 2025-11-27 06:08:50,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:09:01] 2025-11-27 06:08:50,901 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:09:01] 2025-11-27 06:08:54,528 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:09:01] 2025-11-27 06:08:54,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140095489779520)>', '<ExcThread(monitor, started 140094786762496)>']
[2025-11-27 01:09:01] 2025-11-27 06:08:55,930 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:09:01] 2025-11-27 06:08:55,931 | INFO     | [monitor] control thread has ended
[2025-11-27 01:09:01] 2025-11-27 06:09:00,016 | INFO     | all workflow threads have been joined
[2025-11-27 01:09:01] 2025-11-27 06:09:00,017 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:09:01] 2025-11-27 06:09:00,017 | INFO     | traces error code: 0
[2025-11-27 01:09:01] 2025-11-27 06:09:00,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:09:01] 2025-11-27 06:09:00,512 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:09:01] 2025-11-27 06:09:00,539 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:09:01] 2025-11-27 06:09:00,606 [wrapper] pilotpid: 3810579
[2025-11-27 01:09:01] 2025-11-27 06:09:00,651 [wrapper] Pilot exit status: 0
[2025-11-27 01:09:01] 2025-11-27 06:09:00,764 [wrapper] pandaids: 6897139742
[2025-11-27 01:09:01] 2025-11-27 06:09:01,081 [wrapper] cleanup supervisor_pilot 3972743 3810581
[2025-11-27 01:09:01] 2025-11-27 06:09:01,110 [wrapper] Test setup, not cleaning
[2025-11-27 01:09:01] 2025-11-27 06:09:01,138 [wrapper] apfmon messages muted
[2025-11-27 01:09:01] 2025-11-27 06:09:01,156 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:09:01] 2025-11-27 06:09:01,181 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:09:01]  *** Error codes and diagnostics ***
[2025-11-27 01:09:01]     "exeErrorCode": 0,
[2025-11-27 01:09:01]     "exeErrorDiag": "",
[2025-11-27 01:09:01]     "pilotErrorCode": 0,
[2025-11-27 01:09:01]     "pilotErrorDiag": "",
[2025-11-27 01:09:01]  *** Listing of results directory ***
[2025-11-27 01:09:01] total 1315480
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 01:09:01] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas       100 Nov 26 13:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:09:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 13:58 run_atlas
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas       105 Nov 26 13:58 job.xml
[2025-11-27 01:09:01] -rw-r--r--. 2 boincer umatlas 409048900 Nov 26 13:58 EVNT.47483658._002199.pool.root.1
[2025-11-27 01:09:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 13:58 shared
[2025-11-27 01:09:01] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 13:58 input.tar.gz
[2025-11-27 01:09:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:58 start_atlas.sh
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas         0 Nov 26 13:58 boinc_lockfile
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 13:58 pandaJob.out
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas        57 Nov 26 13:58 setup.sh.local
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas    991522 Nov 26 13:58 agis_schedconf.cvmfs.json
[2025-11-27 01:09:01] drwx------. 5 boincer umatlas      4096 Nov 26 13:58 pilot3
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas       532 Nov 27 00:48 boinc_task_state.xml
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 01:00 init_data.xml
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas 919866386 Nov 27 01:07 HITS.47556161._001822.pool.root.1
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas      1061 Nov 27 01:07 memory_monitor_summary.json
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas        95 Nov 27 01:07 pilot_heartbeat.json
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas   1516240 Nov 27 01:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas   1887511 Nov 27 01:07 log.47556161._001822.job.log.tgz.1
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas      8607 Nov 27 01:08 heartbeat.json
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas      4824 Nov 27 01:09 pilotlog.txt
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 01:09 boinc_mmap_file
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas   5219489 Nov 27 01:09 log.47556161._001822.job.log.1
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas       353 Nov 27 01:09 output.list
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas        29 Nov 27 01:09 wrapper_checkpoint.txt
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas       620 Nov 27 01:09 runtime_log
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas   7127040 Nov 27 01:09 result.tar.gz
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 01:09 runtime_log.err
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas       663 Nov 27 01:09 ccSKDmcWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZYJKDmOEjbMn.diag
[2025-11-27 01:09:01] -rw-r--r--. 1 boincer umatlas     21122 Nov 27 01:09 stderr.txt
[2025-11-27 01:09:01] HITS file was successfully produced:
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas 919866386 Nov 27 01:07 shared/HITS.pool.root.1
[2025-11-27 01:09:01]  *** Contents of shared directory: ***
[2025-11-27 01:09:01] total 1305336
[2025-11-27 01:09:01] -rw-r--r--. 2 boincer umatlas 409048900 Nov 26 13:58 ATLAS.root_0
[2025-11-27 01:09:01] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 13:58 input.tar.gz
[2025-11-27 01:09:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 13:58 start_atlas.sh
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas 919866386 Nov 27 01:07 HITS.pool.root.1
[2025-11-27 01:09:01] -rw-------. 1 boincer umatlas   7127040 Nov 27 01:09 result.tar.gz
01:09:03 (3804321): run_atlas exited; CPU time 199801.886303
01:09:03 (3804321): called boinc_finish(0)

</stderr_txt>
]]>

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