Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:12:16 (1434746): wrapper (7.7.26015): starting
11:12:16 (1434746): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:12:16] Arguments: --nthreads 8
[2025-11-26 11:12:16] Threads: 8
[2025-11-26 11:12:16] Checking for CVMFS
[2025-11-26 11:12:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:12:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:12:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:12:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:12:16] 2.13.2.0 7528 33134 171528 153326 2 632 40098085 40960000 21643 16776704 0 71601194 99.771 42898080 42148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 11:12:16] CVMFS is ok
[2025-11-26 11:12:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:12:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:12:16] Further information can be found at the LHC@home message board.
[2025-11-26 11:12:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:12:16] Checking for apptainer binary...
[2025-11-26 11:12:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:12:16] Running /usr/bin/apptainer --version
[2025-11-26 11:12:17] apptainer version 1.4.4-1.el9
[2025-11-26 11:12:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:12:17] c-212-9.aglt2.org
[2025-11-26 11:12:17] apptainer works
[2025-11-26 11:12:17] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:12:17] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:12:17] Starting ATLAS job with PandaID=6891589165
[2025-11-26 11:12:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:18:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:18:11] 2025-11-27 16:17:14,842 | INFO     | time since job start (86682s) is within the limit (172800.0s)
[2025-11-27 11:18:11] 2025-11-27 16:17:15,641 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 11:18:11] 2025-11-27 16:17:15,649 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3000.4386458333324
[2025-11-27 11:18:11] 2025-11-27 16:17:15,665 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891589165/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:18:11] 2025-11-27 16:17:15,665 | INFO     | extracted standard info from prmon json
[2025-11-27 11:18:11] 2025-11-27 16:17:15,665 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:18:11] 2025-11-27 16:17:15,666 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:18:11] 2025-11-27 16:17:15,687 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:18:11] 2025-11-27 16:17:15,689 | INFO     | sum of square deviations: 889709170263.2378
[2025-11-27 11:18:11] 2025-11-27 16:17:15,747 | INFO     | sum of deviations: 5826333444569.054
[2025-11-27 11:18:11] 2025-11-27 16:17:15,748 | INFO     | mean x: 1764216898.4468684
[2025-11-27 11:18:11] 2025-11-27 16:17:15,748 | INFO     | mean y: 2923753.7290640394
[2025-11-27 11:18:11] 2025-11-27 16:17:15,748 | INFO     | intersect: -11550195245.655485
[2025-11-27 11:18:11] 2025-11-27 16:17:15,749 | INFO     | chi2: 12.574033584667687
[2025-11-27 11:18:11] 2025-11-27 16:17:15,750 | INFO     | sum of square deviations: 880350812552.734
[2025-11-27 11:18:11] 2025-11-27 16:17:15,790 | INFO     | sum of deviations: 6334600471812.983
[2025-11-27 11:18:11] 2025-11-27 16:17:15,790 | INFO     | mean x: 1764216745.9519775
[2025-11-27 11:18:11] 2025-11-27 16:17:15,790 | INFO     | mean y: 2932036.058615819
[2025-11-27 11:18:11] 2025-11-27 16:17:15,790 | INFO     | intersect: -12691562104.160435
[2025-11-27 11:18:11] 2025-11-27 16:17:15,792 | INFO     | chi2: 9.12001310350448
[2025-11-27 11:18:11] 2025-11-27 16:17:15,792 | INFO     | current chi2=9.12001310350448 (change=27.469470778055754 %)
[2025-11-27 11:18:11] 2025-11-27 16:17:15,793 | INFO     | sum of square deviations: 871058316542.1558
[2025-11-27 11:18:11] 2025-11-27 16:17:15,832 | INFO     | sum of deviations: 6633435401528.472
[2025-11-27 11:18:11] 2025-11-27 16:17:15,832 | INFO     | mean x: 1764216593.4571226
[2025-11-27 11:18:11] 2025-11-27 16:17:15,832 | INFO     | mean y: 2936936.396172927
[2025-11-27 11:18:11] 2025-11-27 16:17:15,833 | INFO     | intersect: -13432233344.118645
[2025-11-27 11:18:11] 2025-11-27 16:17:15,834 | INFO     | chi2: 7.55837741923969
[2025-11-27 11:18:11] 2025-11-27 16:17:15,834 | INFO     | current chi2=7.55837741923969 (change=17.123173690010503 %)
[2025-11-27 11:18:11] 2025-11-27 16:17:15,834 | INFO     | right removable region: 1410
[2025-11-27 11:18:11] 2025-11-27 16:17:15,835 | INFO     | sum of square deviations: 880349558392.7347
[2025-11-27 11:18:11] 2025-11-27 16:17:15,877 | INFO     | sum of deviations: 5283206289079.868
[2025-11-27 11:18:11] 2025-11-27 16:17:15,877 | INFO     | mean x: 1764217050.9519775
[2025-11-27 11:18:11] 2025-11-27 16:17:15,878 | INFO     | mean y: 2932602.6892655366
[2025-11-27 11:18:11] 2025-11-27 16:17:15,878 | INFO     | intersect: -10584592011.860874
[2025-11-27 11:18:11] 2025-11-27 16:17:15,879 | INFO     | chi2: 8.957062778316365
[2025-11-27 11:18:11] 2025-11-27 16:17:15,879 | INFO     | current chi2=8.957062778316365 (change=28.765398008493655 %)
[2025-11-27 11:18:11] 2025-11-27 16:17:15,880 | INFO     | sum of square deviations: 871055808222.1561
[2025-11-27 11:18:11] 2025-11-27 16:17:15,921 | INFO     | sum of deviations: 4849282066007.559
[2025-11-27 11:18:11] 2025-11-27 16:17:15,921 | INFO     | mean x: 1764217203.4571226
[2025-11-27 11:18:11] 2025-11-27 16:17:15,921 | INFO     | mean y: 2939721.3727852586
[2025-11-27 11:18:11] 2025-11-27 16:17:15,921 | INFO     | intersect: -9818689116.31094
[2025-11-27 11:18:11] 2025-11-27 16:17:15,922 | INFO     | chi2: 6.784700695289433
[2025-11-27 11:18:11] 2025-11-27 16:17:15,922 | INFO     | current chi2=6.784700695289433 (change=24.253063049707293 %)
[2025-11-27 11:18:11] 2025-11-27 16:17:15,922 | INFO     | left removable region: 20
[2025-11-27 11:18:11] 2025-11-27 16:17:15,924 | INFO     | sum of square deviations: 832738777950.3951
[2025-11-27 11:18:11] 2025-11-27 16:17:15,961 | INFO     | sum of deviations: 5279958691581.812
[2025-11-27 11:18:11] 2025-11-27 16:17:15,961 | INFO     | mean x: 1764217172.9791367
[2025-11-27 11:18:11] 2025-11-27 16:17:15,961 | INFO     | mean y: 2960313.8899280573
[2025-11-27 11:18:11] 2025-11-27 16:17:15,962 | INFO     | intersect: -11183013058.499321
[2025-11-27 11:18:11] 2025-11-27 16:17:15,963 | INFO     | chi2: 0.6928596501028095
[2025-11-27 11:18:11] 2025-11-27 16:17:15,963 | INFO     | current memory leak: 6.34 B/s (using 1390 data points, chi2=0.69)
[2025-11-27 11:18:11] 2025-11-27 16:17:15,964 | INFO     | could have reported an average CPU frequency of 3002 MHz (51 samples)
[2025-11-27 11:18:11] 2025-11-27 16:17:15,964 | INFO     | ..............................
[2025-11-27 11:18:11] 2025-11-27 16:17:15,964 | INFO     | . Timing measurements:
[2025-11-27 11:18:11] 2025-11-27 16:17:15,965 | INFO     | . get job = 0 s
[2025-11-27 11:18:11] 2025-11-27 16:17:15,965 | INFO     | . initial setup = 2 s
[2025-11-27 11:18:11] 2025-11-27 16:17:15,965 | INFO     | . payload setup = 10 s
[2025-11-27 11:18:11] 2025-11-27 16:17:15,965 | INFO     | . stage-in = 0 s
[2025-11-27 11:18:11] 2025-11-27 16:17:15,965 | INFO     | . payload execution = 86635 s
[2025-11-27 11:18:11] 2025-11-27 16:17:15,965 | INFO     | . stage-out = 4 s
[2025-11-27 11:18:11] 2025-11-27 16:17:15,965 | INFO     | . log creation = 1 s
[2025-11-27 11:18:11] 2025-11-27 16:17:15,965 | INFO     | ..............................
[2025-11-27 11:18:11] 2025-11-27 16:17:16,063 | INFO     | 
[2025-11-27 11:18:11] 2025-11-27 16:17:16,063 | INFO     | job summary report
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | --------------------------------------------------
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | PanDA job id: 6891589165
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | task id: 47493068
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | errors: (none)
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | pilot state: finished 
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | transexitcode: 0
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | exeerrorcode: 0
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | exeerrordiag: 
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | exitcode: 0
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | exitmsg: OK
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | cpuconsumptiontime: 216230 s
[2025-11-27 11:18:11] 2025-11-27 16:17:16,064 | INFO     | nevents: 1000
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | neventsw: 0
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | pid: 1445056
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | pgrp: 1445056
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | corecount: 8
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | event service: False
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | sizes: {0: 2284132, 1: 2284331, 8: 2284593, 12: 2284621, 86649: 2350022, 86650: 2350021, 86655: 2359199, 86656: 2359255, 86666: 2359501}
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | --------------------------------------------------
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | 
[2025-11-27 11:18:11] 2025-11-27 16:17:16,065 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 11:18:11] 2025-11-27 16:17:16,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,101 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:18:11] 2025-11-27 16:17:16,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:18:11] 2025-11-27 16:17:16,103 | INFO     | job 6891589165 has completed (purged errors)
[2025-11-27 11:18:11] 2025-11-27 16:17:16,103 | INFO     | overall cleanup function is called
[2025-11-27 11:18:11] 2025-11-27 16:17:17,123 | INFO     | --- collectZombieJob: --- 10, [1445056]
[2025-11-27 11:18:11] 2025-11-27 16:17:17,124 | INFO     | zombie collector waiting for pid 1445056
[2025-11-27 11:18:11] 2025-11-27 16:17:17,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:18:11] 2025-11-27 16:17:17,124 | INFO     | collected zombie processes
[2025-11-27 11:18:11] 2025-11-27 16:17:17,124 | INFO     | will attempt to kill all subprocesses of pid=1445056
[2025-11-27 11:18:11] 2025-11-27 16:17:17,601 | INFO     | process IDs to be killed: [1445056] (in reverse order)
[2025-11-27 11:18:11] 2025-11-27 16:17:17,739 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:18:11] 2025-11-27 16:17:17,740 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:18:11] 2025-11-27 16:17:17,777 | INFO     | did not find any defunct processes belonging to 1445056
[2025-11-27 11:18:11] 2025-11-27 16:17:17,795 | INFO     | did not find any defunct processes belonging to 1445056
[2025-11-27 11:18:11] 2025-11-27 16:17:17,796 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:18:11] 2025-11-27 16:17:17,797 | INFO     | ready for new job
[2025-11-27 11:18:11] 2025-11-27 16:17:17,797 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:18:11] 2025-11-27 16:17:17,803 | INFO     | ***************************************
[2025-11-27 11:18:11] 2025-11-27 16:17:17,804 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:18:11] 2025-11-27 16:17:17,804 | INFO     | ***************************************
[2025-11-27 11:18:11] 2025-11-27 16:17:17,804 | INFO     | 
[2025-11-27 11:18:11] 2025-11-27 16:17:17,809 | INFO     | architecture information:
[2025-11-27 11:18:11] 2025-11-27 16:17:17,816 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:18:11] 2025-11-27 16:17:17,843 | INFO     | cat /etc/os-release:
[2025-11-27 11:18:11] NAME="CentOS Linux"
[2025-11-27 11:18:11] VERSION="7 (Core)"
[2025-11-27 11:18:11] ID="centos"
[2025-11-27 11:18:11] ID_LIKE="rhel fedora"
[2025-11-27 11:18:11] VERSION_ID="7"
[2025-11-27 11:18:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:18:11] ANSI_COLOR="0;31"
[2025-11-27 11:18:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:18:11] HOME_URL="https://www.centos.org/"
[2025-11-27 11:18:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:18:11] 
[2025-11-27 11:18:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:18:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:18:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:18:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:18:11] 
[2025-11-27 11:18:11] 2025-11-27 16:17:17,843 | INFO     | ***************************************
[2025-11-27 11:18:11] 2025-11-27 16:17:18,346 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 11:18:11] 2025-11-27 16:17:18,367 | INFO     | sufficient remaining disk space (121345409024 B)
[2025-11-27 11:18:11] 2025-11-27 16:17:18,368 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:18:11] 2025-11-27 16:17:18,368 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:18:11] 2025-11-27 16:17:18,368 | INFO     | update_server=False
[2025-11-27 11:18:11] 2025-11-27 16:17:18,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:18:11] 2025-11-27 16:17:18,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:18:11] 2025-11-27 16:17:18,578 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 11:18:11] 2025-11-27 16:17:18,579 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 11:18:11] 2025-11-27 16:17:18,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:18:11] 2025-11-27 16:17:18,579 | INFO     | will abort loop
[2025-11-27 11:18:11] 2025-11-27 16:17:18,738 | INFO     | all data control threads have been joined
[2025-11-27 11:18:11] 2025-11-27 16:17:19,299 | INFO     | all job control threads have been joined
[2025-11-27 11:18:11] 2025-11-27 16:17:19,374 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:19,399 | INFO     | [job] validate thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:19,584 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:19,595 | INFO     | all payload control threads have been joined
[2025-11-27 11:18:11] 2025-11-27 16:17:19,741 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:19,743 | INFO     | [data] control thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:19,876 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:19,912 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:19,995 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:20,090 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:20,309 | INFO     | [job] control thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:20,506 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:20,601 | INFO     | [payload] control thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:20,712 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:20,755 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:18:11] 2025-11-27 16:17:20,799 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:21,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:18:11] 2025-11-27 16:17:22,080 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:24,763 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:18:11] 2025-11-27 16:17:48,651 | INFO     | PID=1438541 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:18:11] 2025-11-27 16:17:48,653 | INFO     | .. there are 19 such processes running
[2025-11-27 11:18:11] 2025-11-27 16:17:48,653 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:18:11] 2025-11-27 16:17:48,653 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:18:11] 2025-11-27 16:17:48,653 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:18:11] 2025-11-27 16:18:04,471 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:18:11] 2025-11-27 16:18:06,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140222146180928)>', '<ExcThread(monitor, started 140221639268096)>']
[2025-11-27 11:18:11] 2025-11-27 16:18:06,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:18:11] 2025-11-27 16:18:06,767 | INFO     | [monitor] control thread has ended
[2025-11-27 11:18:11] 2025-11-27 16:18:11,137 | INFO     | all workflow threads have been joined
[2025-11-27 11:18:11] 2025-11-27 16:18:11,137 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:18:11] 2025-11-27 16:18:11,138 | INFO     | traces error code: 0
[2025-11-27 11:18:11] 2025-11-27 16:18:11,138 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:18:11] 2025-11-27 16:18:11,320 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:18:11] 2025-11-27 16:18:11,330 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:18:11] 2025-11-27 16:18:11,357 [wrapper] pilotpid: 1438541
[2025-11-27 11:18:11] 2025-11-27 16:18:11,363 [wrapper] Pilot exit status: 0
[2025-11-27 11:18:11] 2025-11-27 16:18:11,411 [wrapper] pandaids: 6891589165
[2025-11-27 11:18:11] 2025-11-27 16:18:11,527 [wrapper] cleanup supervisor_pilot 1063893 1438542
[2025-11-27 11:18:11] 2025-11-27 16:18:11,536 [wrapper] Test setup, not cleaning
[2025-11-27 11:18:11] 2025-11-27 16:18:11,544 [wrapper] apfmon messages muted
[2025-11-27 11:18:11] 2025-11-27 16:18:11,549 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:18:11] 2025-11-27 16:18:11,552 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:18:11]  *** Error codes and diagnostics ***
[2025-11-27 11:18:11]     "exeErrorCode": 0,
[2025-11-27 11:18:11]     "exeErrorDiag": "",
[2025-11-27 11:18:11]     "pilotErrorCode": 0,
[2025-11-27 11:18:11]     "pilotErrorDiag": "",
[2025-11-27 11:18:11]  *** Listing of results directory ***
[2025-11-27 11:18:11] total 1323652
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:24 pilot3.tar.gz
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:40 queuedata.json
[2025-11-27 11:18:11] -rwx------. 1 boincer umatlas     36292 Nov 18 12:42 runpilot2-wrapper.sh
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:18:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:12 run_atlas
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:12 job.xml
[2025-11-27 11:18:11] -rw-r--r--. 2 boincer umatlas 410909397 Nov 26 11:12 EVNT.47493065._000522.pool.root.1
[2025-11-27 11:18:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 11:12 start_atlas.sh
[2025-11-27 11:18:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:12 shared
[2025-11-27 11:18:11] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 11:12 input.tar.gz
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:12 boinc_lockfile
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas      2772 Nov 26 11:12 pandaJob.out
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas    991855 Nov 26 11:12 agis_schedconf.cvmfs.json
[2025-11-27 11:18:11] drwx------. 5 boincer umatlas      4096 Nov 26 11:12 pilot3
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:55 boinc_task_state.xml
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 11:12 init_data.xml
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas 913006040 Nov 27 11:15 HITS.47493068._005219.pool.root.1
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas      1065 Nov 27 11:16 memory_monitor_summary.json
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas   2477891 Nov 27 11:17 log.47493068._005219.job.log.tgz.1
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas        95 Nov 27 11:17 pilot_heartbeat.json
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas      8619 Nov 27 11:17 heartbeat.json
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:18 boinc_mmap_file
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:18 wrapper_checkpoint.txt
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas      5011 Nov 27 11:18 pilotlog.txt
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas  11316713 Nov 27 11:18 log.47493068._005219.job.log.1
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas       353 Nov 27 11:18 output.list
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:18 runtime_log
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas  13813760 Nov 27 11:18 result.tar.gz
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas      8699 Nov 27 11:18 runtime_log.err
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas       663 Nov 27 11:18 K3YMDmYtef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwbFKDmwQWwVn.diag
[2025-11-27 11:18:11] -rw-r--r--. 1 boincer umatlas     21324 Nov 27 11:18 stderr.txt
[2025-11-27 11:18:11] HITS file was successfully produced:
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas 913006040 Nov 27 11:15 shared/HITS.pool.root.1
[2025-11-27 11:18:11]  *** Contents of shared directory: ***
[2025-11-27 11:18:11] total 1306984
[2025-11-27 11:18:11] -rw-r--r--. 2 boincer umatlas 410909397 Nov 26 11:12 ATLAS.root_0
[2025-11-27 11:18:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 11:12 start_atlas.sh
[2025-11-27 11:18:11] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 11:12 input.tar.gz
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas 913006040 Nov 27 11:15 HITS.pool.root.1
[2025-11-27 11:18:11] -rw-------. 1 boincer umatlas  13813760 Nov 27 11:18 result.tar.gz
11:18:12 (1434746): run_atlas exited; CPU time 217378.521372
11:18:12 (1434746): called boinc_finish(0)

</stderr_txt>
]]>

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