Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:14:59 (7946): wrapper (7.7.26015): starting
11:14:59 (7946): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:14:59] Arguments: --nthreads 8
[2025-11-26 11:14:59] Threads: 8
[2025-11-26 11:14:59] Checking for CVMFS
[2025-11-26 11:14:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:14:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:14:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:15:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:15:00] 2.11.2.0 11495 117927 132568 153326 0 85 11251720 18432000 889 130560 0 84133411 99.974 4997584 25237 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 11:15:00] CVMFS is ok
[2025-11-26 11:15:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:15:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:15:00] Further information can be found at the LHC@home message board.
[2025-11-26 11:15:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:15:00] Checking for apptainer binary...
[2025-11-26 11:15:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:15:00] Running /usr/bin/apptainer --version
[2025-11-26 11:15:00] apptainer version 1.3.2-1.el7
[2025-11-26 11:15:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:15:01] c-206-31.aglt2.org
[2025-11-26 11:15:01] apptainer works
[2025-11-26 11:15:01] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:15:01] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:15:01] Starting ATLAS job with PandaID=6893872806
[2025-11-26 11:15:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:39:32]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:39:32] 2025-11-27 11:38:59,853 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2095.125
[2025-11-27 06:39:32] 2025-11-27 11:38:59,858 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893872806/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:39:32] 2025-11-27 11:38:59,859 | INFO     | extracted standard info from prmon json
[2025-11-27 06:39:32] 2025-11-27 11:38:59,859 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:39:32] 2025-11-27 11:38:59,859 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:39:32] 2025-11-27 11:38:59,891 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:39:32] 2025-11-27 11:38:59,893 | INFO     | sum of square deviations: 465473753370.585
[2025-11-27 06:39:32] 2025-11-27 11:38:59,939 | INFO     | sum of deviations: 2163902484036.552
[2025-11-27 06:39:32] 2025-11-27 11:38:59,940 | INFO     | mean x: 1764208632.6375546
[2025-11-27 06:39:32] 2025-11-27 11:38:59,940 | INFO     | mean y: 2867717.866375546
[2025-11-27 06:39:32] 2025-11-27 11:38:59,940 | INFO     | intersect: -8198616071.23953
[2025-11-27 06:39:32] 2025-11-27 11:38:59,942 | INFO     | chi2: 5.580593181657199
[2025-11-27 06:39:32] 2025-11-27 11:38:59,944 | INFO     | sum of square deviations: 459402662183.5442
[2025-11-27 06:39:32] 2025-11-27 11:38:59,989 | INFO     | sum of deviations: 2522094213378.755
[2025-11-27 06:39:32] 2025-11-27 11:38:59,990 | INFO     | mean x: 1764208480.1403508
[2025-11-27 06:39:32] 2025-11-27 11:38:59,990 | INFO     | mean y: 2876711.064035088
[2025-11-27 06:39:32] 2025-11-27 11:38:59,990 | INFO     | intersect: -9682526455.315542
[2025-11-27 06:39:32] 2025-11-27 11:38:59,992 | INFO     | chi2: 2.708439085114779
[2025-11-27 06:39:32] 2025-11-27 11:38:59,992 | INFO     | current chi2=2.708439085114779 (change=51.466824458426345 %)
[2025-11-27 06:39:32] 2025-11-27 11:38:59,994 | INFO     | sum of square deviations: 453384595246.4849
[2025-11-27 06:39:32] 2025-11-27 11:39:00,038 | INFO     | sum of deviations: 2643462955538.066
[2025-11-27 06:39:32] 2025-11-27 11:39:00,039 | INFO     | mean x: 1764208327.6431718
[2025-11-27 06:39:32] 2025-11-27 11:39:00,039 | INFO     | mean y: 2879784.602643172
[2025-11-27 06:39:32] 2025-11-27 11:39:00,039 | INFO     | intersect: -10283352718.381023
[2025-11-27 06:39:32] 2025-11-27 11:39:00,041 | INFO     | chi2: 2.2661082269010397
[2025-11-27 06:39:32] 2025-11-27 11:39:00,041 | INFO     | current chi2=2.2661082269010397 (change=16.331578607203348 %)
[2025-11-27 06:39:32] 2025-11-27 11:39:00,041 | INFO     | right removable region: 1134
[2025-11-27 06:39:32] 2025-11-27 11:39:00,043 | INFO     | sum of square deviations: 459402216883.54407
[2025-11-27 06:39:32] 2025-11-27 11:39:00,087 | INFO     | sum of deviations: 1897711361405.7334
[2025-11-27 06:39:32] 2025-11-27 11:39:00,087 | INFO     | mean x: 1764208785.1403508
[2025-11-27 06:39:32] 2025-11-27 11:39:00,088 | INFO     | mean y: 2874394.6578947366
[2025-11-27 06:39:32] 2025-11-27 11:39:00,088 | INFO     | intersect: -7284767964.067028
[2025-11-27 06:39:32] 2025-11-27 11:39:00,089 | INFO     | chi2: 3.7945275845943316
[2025-11-27 06:39:32] 2025-11-27 11:39:00,090 | INFO     | current chi2=3.7945275845943316 (change=32.00494174944467 %)
[2025-11-27 06:39:32] 2025-11-27 11:39:00,091 | INFO     | sum of square deviations: 453383704646.4848
[2025-11-27 06:39:32] 2025-11-27 11:39:00,135 | INFO     | sum of deviations: 1808416939756.7056
[2025-11-27 06:39:32] 2025-11-27 11:39:00,135 | INFO     | mean x: 1764208937.6431718
[2025-11-27 06:39:32] 2025-11-27 11:39:00,135 | INFO     | mean y: 2876656.826431718
[2025-11-27 06:39:32] 2025-11-27 11:39:00,135 | INFO     | intersect: -7034044378.065531
[2025-11-27 06:39:32] 2025-11-27 11:39:00,136 | INFO     | chi2: 3.7082908546744484
[2025-11-27 06:39:32] 2025-11-27 11:39:00,136 | INFO     | current chi2=3.7082908546744484 (change=2.272660509044702 %)
[2025-11-27 06:39:32] 2025-11-27 11:39:00,136 | INFO     | left removable region: 20
[2025-11-27 06:39:32] 2025-11-27 11:39:00,137 | INFO     | sum of square deviations: 428681188651.26337
[2025-11-27 06:39:32] 2025-11-27 11:39:00,159 | INFO     | sum of deviations: 2162716451192.72
[2025-11-27 06:39:32] 2025-11-27 11:39:00,159 | INFO     | mean x: 1764208907.1490126
[2025-11-27 06:39:32] 2025-11-27 11:39:00,160 | INFO     | mean y: 2892914.0619389587
[2025-11-27 06:39:32] 2025-11-27 11:39:00,160 | INFO     | intersect: -8897622732.160725
[2025-11-27 06:39:32] 2025-11-27 11:39:00,161 | INFO     | chi2: 0.27534782721540957
[2025-11-27 06:39:32] 2025-11-27 11:39:00,161 | INFO     | current memory leak: 5.05 B/s (using 1114 data points, chi2=0.28)
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | could have reported an average CPU frequency of 2565 MHz (42 samples)
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | ..............................
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | . Timing measurements:
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | . get job = 0 s
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | . initial setup = 2 s
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | . payload setup = 6 s
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | . stage-in = 0 s
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | . payload execution = 69791 s
[2025-11-27 06:39:32] 2025-11-27 11:39:00,162 | INFO     | . stage-out = 3 s
[2025-11-27 06:39:32] 2025-11-27 11:39:00,163 | INFO     | . log creation = 0 s
[2025-11-27 06:39:32] 2025-11-27 11:39:00,163 | INFO     | ..............................
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | 
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | job summary report
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | --------------------------------------------------
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | PanDA job id: 6893872806
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | task id: 47523449
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | errors: (none)
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | pilot state: finished 
[2025-11-27 06:39:32] 2025-11-27 11:39:00,255 | INFO     | transexitcode: 0
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | exeerrorcode: 0
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | exeerrordiag: 
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | exitcode: 0
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | exitmsg: OK
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | cpuconsumptiontime: 541946 s
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | nevents: 1000
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | neventsw: 0
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | pid: 30553
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | pgrp: 30553
[2025-11-27 06:39:32] 2025-11-27 11:39:00,256 | INFO     | corecount: 8
[2025-11-27 06:39:32] 2025-11-27 11:39:00,257 | INFO     | event service: False
[2025-11-27 06:39:32] 2025-11-27 11:39:00,257 | INFO     | sizes: {0: 2284143, 1: 2284342, 4: 2284604, 11: 2284632, 69801: 2341258, 69805: 2350252, 69806: 2350436, 69811: 2350682}
[2025-11-27 06:39:32] 2025-11-27 11:39:00,257 | INFO     | --------------------------------------------------
[2025-11-27 06:39:32] 2025-11-27 11:39:00,257 | INFO     | 
[2025-11-27 06:39:32] 2025-11-27 11:39:00,257 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 06:39:32] 2025-11-27 11:39:00,270 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,270 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,270 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,271 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,272 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,272 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:39:32] 2025-11-27 11:39:00,272 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,272 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:39:32] 2025-11-27 11:39:00,273 | INFO     | job 6893872806 has completed (purged errors)
[2025-11-27 06:39:32] 2025-11-27 11:39:00,273 | INFO     | overall cleanup function is called
[2025-11-27 06:39:32] 2025-11-27 11:39:01,285 | INFO     | --- collectZombieJob: --- 10, [30553]
[2025-11-27 06:39:32] 2025-11-27 11:39:01,286 | INFO     | zombie collector waiting for pid 30553
[2025-11-27 06:39:32] 2025-11-27 11:39:01,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:39:32] 2025-11-27 11:39:01,286 | INFO     | collected zombie processes
[2025-11-27 06:39:32] 2025-11-27 11:39:01,286 | INFO     | will attempt to kill all subprocesses of pid=30553
[2025-11-27 06:39:32] 2025-11-27 11:39:01,422 | INFO     | process IDs to be killed: [30553] (in reverse order)
[2025-11-27 06:39:32] 2025-11-27 11:39:01,466 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:39:32] 2025-11-27 11:39:01,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:39:32] 2025-11-27 11:39:01,469 | INFO     | did not find any defunct processes belonging to 30553
[2025-11-27 06:39:32] 2025-11-27 11:39:01,472 | INFO     | did not find any defunct processes belonging to 30553
[2025-11-27 06:39:32] 2025-11-27 11:39:01,473 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:39:32] 2025-11-27 11:39:01,474 | INFO     | ready for new job
[2025-11-27 06:39:32] 2025-11-27 11:39:01,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:39:32] 2025-11-27 11:39:01,478 | INFO     | ***************************************
[2025-11-27 06:39:32] 2025-11-27 11:39:01,478 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:39:32] 2025-11-27 11:39:01,478 | INFO     | ***************************************
[2025-11-27 06:39:32] 2025-11-27 11:39:01,478 | INFO     | 
[2025-11-27 06:39:32] 2025-11-27 11:39:01,479 | INFO     | architecture information:
[2025-11-27 06:39:32] 2025-11-27 11:39:01,480 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:39:32] 2025-11-27 11:39:01,493 | INFO     | cat /etc/os-release:
[2025-11-27 06:39:32] NAME="CentOS Linux"
[2025-11-27 06:39:32] VERSION="7 (Core)"
[2025-11-27 06:39:32] ID="centos"
[2025-11-27 06:39:32] ID_LIKE="rhel fedora"
[2025-11-27 06:39:32] VERSION_ID="7"
[2025-11-27 06:39:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:39:32] ANSI_COLOR="0;31"
[2025-11-27 06:39:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:39:32] HOME_URL="https://www.centos.org/"
[2025-11-27 06:39:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:39:32] 
[2025-11-27 06:39:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:39:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:39:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:39:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:39:32] 
[2025-11-27 06:39:32] 2025-11-27 11:39:01,493 | INFO     | ***************************************
[2025-11-27 06:39:32] 2025-11-27 11:39:01,996 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 06:39:32] 2025-11-27 11:39:02,008 | INFO     | sufficient remaining disk space (24699207680 B)
[2025-11-27 06:39:32] 2025-11-27 11:39:02,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:39:32] 2025-11-27 11:39:02,008 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:39:32] 2025-11-27 11:39:02,009 | INFO     | update_server=False
[2025-11-27 06:39:32] 2025-11-27 11:39:02,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:39:32] 2025-11-27 11:39:02,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:39:32] 2025-11-27 11:39:02,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:39:32] 2025-11-27 11:39:02,193 | INFO     | all data control threads have been joined
[2025-11-27 06:39:32] 2025-11-27 11:39:02,282 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 06:39:32] 2025-11-27 11:39:02,282 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 06:39:32] 2025-11-27 11:39:02,282 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:39:32] 2025-11-27 11:39:02,282 | INFO     | will abort loop
[2025-11-27 06:39:32] 2025-11-27 11:39:03,006 | INFO     | all payload control threads have been joined
[2025-11-27 06:39:32] 2025-11-27 11:39:03,014 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,014 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,038 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,088 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,167 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,198 | INFO     | [data] control thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,256 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,287 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,376 | INFO     | [job] validate thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,448 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:03,584 | INFO     | all job control threads have been joined
[2025-11-27 06:39:32] 2025-11-27 11:39:04,010 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:04,012 | INFO     | [payload] control thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:04,085 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:04,589 | INFO     | [job] control thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:05,085 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:39:32] 2025-11-27 11:39:09,065 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:39:32] 2025-11-27 11:39:09,091 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:12,437 | INFO     | job.realtimelogging is not enabled
[2025-11-27 06:39:32] 2025-11-27 11:39:13,442 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:39:32] 2025-11-27 11:39:13,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016402814784)>', '<ExcThread(monitor, started 140015455692544)>']
[2025-11-27 06:39:32] 2025-11-27 11:39:18,864 | INFO     | all workflow threads have been joined
[2025-11-27 06:39:32] 2025-11-27 11:39:18,865 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:39:32] 2025-11-27 11:39:18,865 | INFO     | traces error code: 0
[2025-11-27 06:39:32] 2025-11-27 11:39:18,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:39:32] 2025-11-27 11:39:32,554 | INFO     | PID=17024 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 06:39:32] 2025-11-27 11:39:32,554 | INFO     | .. there are 3 such processes running
[2025-11-27 06:39:32] 2025-11-27 11:39:32,555 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:39:32] 2025-11-27 11:39:32,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:39:32] 2025-11-27 11:39:32,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:39:32] 2025-11-27 11:39:32,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:39:32] 2025-11-27 11:39:32,556 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 06:39:32] 2025-11-27 11:39:32,556 | INFO     | [monitor] control thread has ended
[2025-11-27 06:39:32] 2025-11-27 11:39:32,657 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:39:32] 2025-11-27 11:39:32,660 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:39:32] 2025-11-27 11:39:32,663 [wrapper] pilotpid: 17024
[2025-11-27 06:39:32] 2025-11-27 11:39:32,665 [wrapper] Pilot exit status: 0
[2025-11-27 06:39:32] 2025-11-27 11:39:32,675 [wrapper] pandaids: 6893872806
[2025-11-27 06:39:32] 2025-11-27 11:39:32,718 [wrapper] cleanup supervisor_pilot 22942 17025
[2025-11-27 06:39:32] 2025-11-27 11:39:32,722 [wrapper] Test setup, not cleaning
[2025-11-27 06:39:32] 2025-11-27 11:39:32,725 [wrapper] apfmon messages muted
[2025-11-27 06:39:32] 2025-11-27 11:39:32,728 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:39:32] 2025-11-27 11:39:32,730 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:39:32]  *** Error codes and diagnostics ***
[2025-11-27 06:39:32]     "exeErrorCode": 0,
[2025-11-27 06:39:32]     "exeErrorDiag": "",
[2025-11-27 06:39:32]     "pilotErrorCode": 0,
[2025-11-27 06:39:32]     "pilotErrorDiag": "",
[2025-11-27 06:39:32]  *** Listing of results directory ***
[2025-11-27 06:39:32] total 1330272
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 10:07 pilot3.tar.gz
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 10:20 queuedata.json
[2025-11-27 06:39:32] -rwx------ 1 boincer umatlas     36292 Nov 20 10:22 runpilot2-wrapper.sh
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas       100 Nov 26 11:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:39:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 11:14 run_atlas
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas       105 Nov 26 11:14 job.xml
[2025-11-27 06:39:32] -rw-r--r-- 2 boincer umatlas 410695091 Nov 26 11:14 EVNT.47493127._000686.pool.root.1
[2025-11-27 06:39:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 11:14 start_atlas.sh
[2025-11-27 06:39:32] drwxrwx--x 2 boincer umatlas      4096 Nov 26 11:14 shared
[2025-11-27 06:39:32] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 11:14 input.tar.gz
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas         0 Nov 26 11:14 boinc_lockfile
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 11:15 pandaJob.out
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas        57 Nov 26 11:15 setup.sh.local
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas    991855 Nov 26 11:15 agis_schedconf.cvmfs.json
[2025-11-27 06:39:32] drwx------ 5 boincer umatlas      4096 Nov 26 11:15 pilot3
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas       533 Nov 27 06:24 boinc_task_state.xml
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas      5954 Nov 27 06:38 init_data.xml
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas 923624847 Nov 27 06:38 HITS.47523449._006856.pool.root.1
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas      1064 Nov 27 06:38 memory_monitor_summary.json
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas   1516240 Nov 27 06:38 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas   2306942 Nov 27 06:38 log.47523449._006856.job.log.tgz.1
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas      8667 Nov 27 06:39 heartbeat.json
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 06:39 boinc_mmap_file
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas        29 Nov 27 06:39 wrapper_checkpoint.txt
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas        95 Nov 27 06:39 pilot_heartbeat.json
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas       890 Nov 27 06:39 pilotlog.txt
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas   9674259 Nov 27 06:39 log.47523449._006856.job.log.1
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas       353 Nov 27 06:39 output.list
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas       620 Nov 27 06:39 runtime_log
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas  12001280 Nov 27 06:39 result.tar.gz
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas       668 Nov 27 06:39 wE0NDm5eLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwCIKDm3HPLMn.diag
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 06:39 runtime_log.err
[2025-11-27 06:39:32] -rw-r--r-- 1 boincer umatlas     21238 Nov 27 06:39 stderr.txt
[2025-11-27 06:39:32] HITS file was successfully produced:
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas 923624847 Nov 27 06:38 shared/HITS.pool.root.1
[2025-11-27 06:39:32]  *** Contents of shared directory: ***
[2025-11-27 06:39:32] total 1315372
[2025-11-27 06:39:32] -rw-r--r-- 2 boincer umatlas 410695091 Nov 26 11:14 ATLAS.root_0
[2025-11-27 06:39:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 11:14 start_atlas.sh
[2025-11-27 06:39:32] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 11:14 input.tar.gz
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas 923624847 Nov 27 06:38 HITS.pool.root.1
[2025-11-27 06:39:32] -rw------- 1 boincer umatlas  12001280 Nov 27 06:39 result.tar.gz
06:39:34 (7946): run_atlas exited; CPU time 541088.548271
06:39:34 (7946): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN