Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:40:33 (2118270): wrapper (7.7.26015): starting
12:40:33 (2118270): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:40:33] Arguments: --nthreads 8
[2025-11-26 12:40:33] Threads: 8
[2025-11-26 12:40:33] Checking for CVMFS
[2025-11-26 12:40:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:40:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:40:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:40:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:40:34] 2.13.3.0 11379 30362 339400 153330 3 400 30935919 32935937 32881 16776704 0 110332453 99.429 156956073 39192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 12:40:34] CVMFS is ok
[2025-11-26 12:40:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:40:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:40:34] Further information can be found at the LHC@home message board.
[2025-11-26 12:40:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:40:34] Checking for apptainer binary...
[2025-11-26 12:40:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:40:34] Running /usr/bin/apptainer --version
[2025-11-26 12:40:34] apptainer version 1.4.4-1.el9
[2025-11-26 12:40:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:40:34] c6-4-5-1.aglt2.org
[2025-11-26 12:40:34] apptainer works
[2025-11-26 12:40:34] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:40:34] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:40:34] Starting ATLAS job with PandaID=6891570516
[2025-11-26 12:40:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:40:09 (2118270): BOINC client no longer exists - exiting
16:40:09 (2118270): timer handler: client dead, exiting
16:45:53 (3306072): wrapper (7.7.26015): starting
16:45:53 (3306072): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:45:53] Arguments: --nthreads 8
[2025-11-26 16:45:53] Threads: 8
[2025-11-26 16:45:53] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:45:54] Checking for CVMFS
[2025-11-26 16:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:45:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:45:54] 2.13.3.0 11379 30608 329344 153335 2 451 18584503 32935936 28735 16776704 0 113219709 99.439 158163117 39170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:45:54] CVMFS is ok
[2025-11-26 16:45:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:45:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:45:54] Further information can be found at the LHC@home message board.
[2025-11-26 16:45:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:45:54] Checking for apptainer binary...
[2025-11-26 16:45:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:45:54] Running /usr/bin/apptainer --version
[2025-11-26 16:45:54] apptainer version 1.4.4-1.el9
[2025-11-26 16:45:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:45:54] c6-4-5-1.aglt2.org
[2025-11-26 16:45:54] apptainer works
[2025-11-26 16:45:54] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:45:54] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:45:54] Starting ATLAS job with PandaID=6891570516
[2025-11-26 16:45:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:58:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:58:11] 2025-11-27 16:57:26,872 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:58:11] 2025-11-27 16:57:26,879 | INFO     | sum of square deviations: 449777465696.9077
[2025-11-27 11:58:11] 2025-11-27 16:57:26,901 | INFO     | sum of deviations: 1992182350305.4968
[2025-11-27 11:58:11] 2025-11-27 16:57:26,902 | INFO     | mean x: 1764228088.1033568
[2025-11-27 11:58:11] 2025-11-27 16:57:26,902 | INFO     | mean y: 2924343.816254417
[2025-11-27 11:58:11] 2025-11-27 16:57:26,902 | INFO     | intersect: -7811304529.537643
[2025-11-27 11:58:11] 2025-11-27 16:57:26,903 | INFO     | chi2: 10.688265172416987
[2025-11-27 11:58:11] 2025-11-27 16:57:26,905 | INFO     | sum of square deviations: 443844084743.99615
[2025-11-27 11:58:11] 2025-11-27 16:57:26,927 | INFO     | sum of deviations: 2373681602114.234
[2025-11-27 11:58:11] 2025-11-27 16:57:26,928 | INFO     | mean x: 1764227935.6104703
[2025-11-27 11:58:11] 2025-11-27 16:57:26,928 | INFO     | mean y: 2934146.8615794145
[2025-11-27 11:58:11] 2025-11-27 16:57:26,928 | INFO     | intersect: -9432170514.069006
[2025-11-27 11:58:11] 2025-11-27 16:57:26,929 | INFO     | chi2: 7.518336091577241
[2025-11-27 11:58:11] 2025-11-27 16:57:26,929 | INFO     | current chi2=7.518336091577241 (change=29.65803177320418 %)
[2025-11-27 11:58:11] 2025-11-27 16:57:26,930 | INFO     | sum of square deviations: 437963123378.4712
[2025-11-27 11:58:11] 2025-11-27 16:57:26,985 | INFO     | sum of deviations: 2805780937468.4736
[2025-11-27 11:58:11] 2025-11-27 16:57:26,985 | INFO     | mean x: 1764227783.1176472
[2025-11-27 11:58:11] 2025-11-27 16:57:26,985 | INFO     | mean y: 2945350.526737968
[2025-11-27 11:58:11] 2025-11-27 16:57:26,985 | INFO     | intersect: -11299459849.799053
[2025-11-27 11:58:11] 2025-11-27 16:57:26,986 | INFO     | chi2: 3.6517067286124454
[2025-11-27 11:58:11] 2025-11-27 16:57:26,987 | INFO     | current chi2=3.6517067286124454 (change=51.429323135694396 %)
[2025-11-27 11:58:11] 2025-11-27 16:57:26,988 | INFO     | sum of square deviations: 432134349037.8278
[2025-11-27 11:58:11] 2025-11-27 16:57:27,050 | INFO     | sum of deviations: 3021071047623.5234
[2025-11-27 11:58:11] 2025-11-27 16:57:27,050 | INFO     | mean x: 1764227630.6248882
[2025-11-27 11:58:11] 2025-11-27 16:57:27,051 | INFO     | mean y: 2950976.218442256
[2025-11-27 11:58:11] 2025-11-27 16:57:27,051 | INFO     | intersect: -12330845279.889256
[2025-11-27 11:58:11] 2025-11-27 16:57:27,052 | INFO     | chi2: 2.2490899489223244
[2025-11-27 11:58:11] 2025-11-27 16:57:27,052 | INFO     | current chi2=2.2490899489223244 (change=38.409896629981546 %)
[2025-11-27 11:58:11] 2025-11-27 16:57:27,053 | INFO     | sum of square deviations: 426357256864.6106
[2025-11-27 11:58:11] 2025-11-27 16:57:27,095 | INFO     | sum of deviations: 3066259875893.515
[2025-11-27 11:58:11] 2025-11-27 16:57:27,095 | INFO     | mean x: 1764227478.128597
[2025-11-27 11:58:11] 2025-11-27 16:57:27,096 | INFO     | mean y: 2952164.9334532376
[2025-11-27 11:58:11] 2025-11-27 16:57:27,096 | INFO     | intersect: -12684951795.97492
[2025-11-27 11:58:11] 2025-11-27 16:57:27,097 | INFO     | chi2: 2.059474691244654
[2025-11-27 11:58:11] 2025-11-27 16:57:27,097 | INFO     | current chi2=2.059474691244654 (change=8.430754748983087 %)
[2025-11-27 11:58:11] 2025-11-27 16:57:27,097 | INFO     | right removable region: 1111
[2025-11-27 11:58:11] 2025-11-27 16:57:27,098 | INFO     | sum of square deviations: 443843322121.0786
[2025-11-27 11:58:11] 2025-11-27 16:57:27,119 | INFO     | sum of deviations: 1721851404107.597
[2025-11-27 11:58:11] 2025-11-27 16:57:27,119 | INFO     | mean x: 1764228240.6060338
[2025-11-27 11:58:11] 2025-11-27 16:57:27,119 | INFO     | mean y: 2931281.618456078
[2025-11-27 11:58:11] 2025-11-27 16:57:27,119 | INFO     | intersect: -6841238094.946124
[2025-11-27 11:58:11] 2025-11-27 16:57:27,120 | INFO     | chi2: 8.948603691971623
[2025-11-27 11:58:11] 2025-11-27 16:57:27,120 | INFO     | current chi2=8.948603691971623 (change=16.276369012015873 %)
[2025-11-27 11:58:11] 2025-11-27 16:57:27,121 | INFO     | left removable region: 10
[2025-11-27 11:58:11] 2025-11-27 16:57:27,122 | INFO     | sum of square deviations: 413828990271.06494
[2025-11-27 11:58:11] 2025-11-27 16:57:27,141 | INFO     | sum of deviations: 2693473109137.9756
[2025-11-27 11:58:11] 2025-11-27 16:57:27,141 | INFO     | mean x: 1764227752.6285195
[2025-11-27 11:58:11] 2025-11-27 16:57:27,141 | INFO     | mean y: 2961752.0390554043
[2025-11-27 11:58:11] 2025-11-27 16:57:27,141 | INFO     | intersect: -11479800746.03356
[2025-11-27 11:58:11] 2025-11-27 16:57:27,143 | INFO     | chi2: 0.20115650992054282
[2025-11-27 11:58:11] 2025-11-27 16:57:27,143 | INFO     | current memory leak: 6.51 B/s (using 1101 data points, chi2=0.20)
[2025-11-27 11:58:11] 2025-11-27 16:57:27,144 | INFO     | could have reported an average CPU frequency of 3027 MHz (41 samples)
[2025-11-27 11:58:11] 2025-11-27 16:57:27,144 | INFO     | ..............................
[2025-11-27 11:58:11] 2025-11-27 16:57:27,144 | INFO     | . Timing measurements:
[2025-11-27 11:58:11] 2025-11-27 16:57:27,144 | INFO     | . get job = 0 s
[2025-11-27 11:58:11] 2025-11-27 16:57:27,144 | INFO     | . initial setup = 2 s
[2025-11-27 11:58:11] 2025-11-27 16:57:27,145 | INFO     | . payload setup = 5 s
[2025-11-27 11:58:11] 2025-11-27 16:57:27,145 | INFO     | . stage-in = 0 s
[2025-11-27 11:58:11] 2025-11-27 16:57:27,145 | INFO     | . payload execution = 69024 s
[2025-11-27 11:58:11] 2025-11-27 16:57:27,145 | INFO     | . stage-out = 5 s
[2025-11-27 11:58:11] 2025-11-27 16:57:27,145 | INFO     | . log creation = 0 s
[2025-11-27 11:58:11] 2025-11-27 16:57:27,145 | INFO     | ..............................
[2025-11-27 11:58:11] 2025-11-27 16:57:27,235 | INFO     | 
[2025-11-27 11:58:11] 2025-11-27 16:57:27,235 | INFO     | job summary report
[2025-11-27 11:58:11] 2025-11-27 16:57:27,235 | INFO     | --------------------------------------------------
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | PanDA job id: 6891570516
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | task id: 47493068
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | errors: (none)
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | pilot state: finished 
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | transexitcode: 0
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | exeerrorcode: 0
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | exeerrordiag: 
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | exitcode: 0
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | exitmsg: OK
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | cpuconsumptiontime: 237310 s
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | nevents: 1000
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | neventsw: 0
[2025-11-27 11:58:11] 2025-11-27 16:57:27,236 | INFO     | pid: 3366882
[2025-11-27 11:58:11] 2025-11-27 16:57:27,237 | INFO     | pgrp: 3366882
[2025-11-27 11:58:11] 2025-11-27 16:57:27,237 | INFO     | corecount: 8
[2025-11-27 11:58:11] 2025-11-27 16:57:27,237 | INFO     | event service: False
[2025-11-27 11:58:11] 2025-11-27 16:57:27,237 | INFO     | sizes: {0: 2284304, 4: 2284566, 11: 2284594, 69034: 2342680, 69041: 2351674, 69043: 2351730, 69067: 2352200}
[2025-11-27 11:58:11] 2025-11-27 16:57:27,238 | INFO     | --------------------------------------------------
[2025-11-27 11:58:11] 2025-11-27 16:57:27,238 | INFO     | 
[2025-11-27 11:58:11] 2025-11-27 16:57:27,238 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 11:58:11] 2025-11-27 16:57:27,301 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,301 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,301 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,301 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,303 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:58:11] 2025-11-27 16:57:27,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:58:11] 2025-11-27 16:57:27,303 | INFO     | job 6891570516 has completed (purged errors)
[2025-11-27 11:58:11] 2025-11-27 16:57:27,303 | INFO     | overall cleanup function is called
[2025-11-27 11:58:11] 2025-11-27 16:57:28,356 | INFO     | --- collectZombieJob: --- 10, [3366882]
[2025-11-27 11:58:11] 2025-11-27 16:57:28,356 | INFO     | zombie collector waiting for pid 3366882
[2025-11-27 11:58:11] 2025-11-27 16:57:28,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:58:11] 2025-11-27 16:57:28,357 | INFO     | collected zombie processes
[2025-11-27 11:58:11] 2025-11-27 16:57:28,357 | INFO     | will attempt to kill all subprocesses of pid=3366882
[2025-11-27 11:58:11] 2025-11-27 16:57:29,205 | INFO     | PID=3324635 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:58:11] 2025-11-27 16:57:29,206 | INFO     | .. there are 46 such processes running
[2025-11-27 11:58:11] 2025-11-27 16:57:29,561 | INFO     | process IDs to be killed: [3366882] (in reverse order)
[2025-11-27 11:58:11] 2025-11-27 16:57:29,726 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:58:11] 2025-11-27 16:57:29,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:58:11] 2025-11-27 16:57:29,746 | INFO     | did not find any defunct processes belonging to 3366882
[2025-11-27 11:58:11] 2025-11-27 16:57:29,768 | INFO     | did not find any defunct processes belonging to 3366882
[2025-11-27 11:58:11] 2025-11-27 16:57:29,769 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:58:11] 2025-11-27 16:57:29,770 | INFO     | ready for new job
[2025-11-27 11:58:11] 2025-11-27 16:57:29,770 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:58:11] 2025-11-27 16:57:29,777 | INFO     | ***************************************
[2025-11-27 11:58:11] 2025-11-27 16:57:29,777 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:58:11] 2025-11-27 16:57:29,778 | INFO     | ***************************************
[2025-11-27 11:58:11] 2025-11-27 16:57:29,778 | INFO     | 
[2025-11-27 11:58:11] 2025-11-27 16:57:29,782 | INFO     | architecture information:
[2025-11-27 11:58:11] 2025-11-27 16:57:29,783 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:58:11] 2025-11-27 16:57:29,831 | INFO     | cat /etc/os-release:
[2025-11-27 11:58:11] NAME="CentOS Linux"
[2025-11-27 11:58:11] VERSION="7 (Core)"
[2025-11-27 11:58:11] ID="centos"
[2025-11-27 11:58:11] ID_LIKE="rhel fedora"
[2025-11-27 11:58:11] VERSION_ID="7"
[2025-11-27 11:58:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:58:11] ANSI_COLOR="0;31"
[2025-11-27 11:58:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:58:11] HOME_URL="https://www.centos.org/"
[2025-11-27 11:58:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:58:11] 
[2025-11-27 11:58:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:58:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:58:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:58:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:58:11] 
[2025-11-27 11:58:11] 2025-11-27 16:57:29,840 | INFO     | ***************************************
[2025-11-27 11:58:11] 2025-11-27 16:57:30,348 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 11:58:11] 2025-11-27 16:57:30,431 | INFO     | sufficient remaining disk space (68233986048 B)
[2025-11-27 11:58:11] 2025-11-27 16:57:30,431 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:58:11] 2025-11-27 16:57:30,431 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:58:11] 2025-11-27 16:57:30,432 | INFO     | update_server=False
[2025-11-27 11:58:11] 2025-11-27 16:57:30,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:58:11] 2025-11-27 16:57:30,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:58:11] 2025-11-27 16:57:30,797 | INFO     | aborting loop
[2025-11-27 11:58:11] 2025-11-27 16:57:31,250 | INFO     | all data control threads have been joined
[2025-11-27 11:58:11] 2025-11-27 16:57:31,439 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:31,484 | INFO     | all job control threads have been joined
[2025-11-27 11:58:11] 2025-11-27 16:57:31,533 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:31,551 | INFO     | all payload control threads have been joined
[2025-11-27 11:58:11] 2025-11-27 16:57:31,794 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:58:11] 2025-11-27 16:57:31,803 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:31,892 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:58:11] 2025-11-27 16:57:31,923 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,255 | INFO     | [data] control thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,272 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:58:11] 2025-11-27 16:57:32,472 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,491 | INFO     | [job] control thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,491 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,556 | INFO     | [payload] control thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,581 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,784 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,821 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:32,921 | INFO     | [job] validate thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:33,278 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:33,803 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:57:35,902 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:58:11] 2025-11-27 16:58:02,263 | INFO     | PID=3324635 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:58:11] 2025-11-27 16:58:02,263 | INFO     | .. there are 47 such processes running
[2025-11-27 11:58:11] 2025-11-27 16:58:02,264 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:58:11] 2025-11-27 16:58:02,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:58:11] 2025-11-27 16:58:02,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:58:11] 2025-11-27 16:58:05,001 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:58:11] 2025-11-27 16:58:05,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139966384506688)>', '<ExcThread(monitor, started 139965518305024)>']
[2025-11-27 11:58:11] 2025-11-27 16:58:06,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:58:11] 2025-11-27 16:58:06,294 | INFO     | [monitor] control thread has ended
[2025-11-27 11:58:11] 2025-11-27 16:58:10,342 | INFO     | all workflow threads have been joined
[2025-11-27 11:58:11] 2025-11-27 16:58:10,343 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:58:11] 2025-11-27 16:58:10,343 | INFO     | traces error code: 0
[2025-11-27 11:58:11] 2025-11-27 16:58:10,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:58:11] 2025-11-27 16:58:10,809 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:58:11] 2025-11-27 16:58:10,851 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:58:11] 2025-11-27 16:58:10,896 [wrapper] pilotpid: 3324635
[2025-11-27 11:58:11] 2025-11-27 16:58:10,910 [wrapper] Pilot exit status: 0
[2025-11-27 11:58:11] 2025-11-27 16:58:11,061 [wrapper] pandaids: 6891570516 6891570516
[2025-11-27 11:58:11] 2025-11-27 16:58:11,205 [wrapper] cleanup supervisor_pilot   21846 3324636
[2025-11-27 11:58:11] 2025-11-27 16:58:11,249 [wrapper] Test setup, not cleaning
[2025-11-27 11:58:11] 2025-11-27 16:58:11,263 [wrapper] apfmon messages muted
[2025-11-27 11:58:11] 2025-11-27 16:58:11,277 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:58:11] 2025-11-27 16:58:11,290 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:58:11]  *** Error codes and diagnostics ***
[2025-11-27 11:58:11]     "exeErrorCode": 0,
[2025-11-27 11:58:11]     "exeErrorDiag": "",
[2025-11-27 11:58:11]     "pilotErrorCode": 0,
[2025-11-27 11:58:11]     "pilotErrorDiag": "",
[2025-11-27 11:58:11]  *** Listing of results directory ***
[2025-11-27 11:58:11] total 1719536
[2025-11-27 11:58:11] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:39 queuedata.json
[2025-11-27 11:58:11] -rwx------. 1 boincer umatlas     36292 Nov 18 10:40 runpilot2-wrapper.sh
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas       100 Nov 26 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:58:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 12:40 run_atlas
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas       105 Nov 26 12:40 job.xml
[2025-11-27 11:58:11] -rw-r--r--. 3 boincer umatlas 410345841 Nov 26 12:40 EVNT.47493065._000238.pool.root.1
[2025-11-27 11:58:11] -rw-r--r--. 3 boincer umatlas 410345841 Nov 26 12:40 ATLAS.root_0
[2025-11-27 11:58:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 12:40 start_atlas.sh
[2025-11-27 11:58:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 12:40 shared
[2025-11-27 11:58:11] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 12:40 input.tar.gz
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas         0 Nov 26 12:40 boinc_lockfile
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 16:45 pandaJob.out
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas    991538 Nov 26 16:46 agis_schedconf.cvmfs.json
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas       533 Nov 27 11:38 boinc_task_state.xml
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas 913828367 Nov 27 11:55 HITS.47493068._002373.pool.root.1
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas      1069 Nov 27 11:56 memory_monitor_summary.json
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas      6877 Nov 27 11:56 init_data.xml
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:56 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas   2234456 Nov 27 11:57 log.47493068._002373.job.log.tgz.1
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas      8634 Nov 27 11:57 heartbeat.json
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas        96 Nov 27 11:58 pilot_heartbeat.json
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:58 wrapper_checkpoint.txt
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:58 boinc_mmap_file
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas      4824 Nov 27 11:58 pilotlog.txt
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas   8946768 Nov 27 11:58 log.47493068._002373.job.log.1
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas       353 Nov 27 11:58 output.list
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:58 runtime_log
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas  11202560 Nov 27 11:58 result.tar.gz
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas      8789 Nov 27 11:58 runtime_log.err
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas       789 Nov 27 11:58 rQPKDmkzcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0cFKDm9IsdEo.diag
[2025-11-27 11:58:11] -rw-r--r--. 1 boincer umatlas     23521 Nov 27 11:58 stderr.txt
[2025-11-27 11:58:11] HITS file was successfully produced:
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas 913828367 Nov 27 11:55 shared/HITS.pool.root.1
[2025-11-27 11:58:11]  *** Contents of shared directory: ***
[2025-11-27 11:58:11] total 1304684
[2025-11-27 11:58:11] -rw-r--r--. 3 boincer umatlas 410345841 Nov 26 12:40 ATLAS.root_0
[2025-11-27 11:58:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 12:40 start_atlas.sh
[2025-11-27 11:58:11] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 12:40 input.tar.gz
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas 913828367 Nov 27 11:55 HITS.pool.root.1
[2025-11-27 11:58:11] -rw-------. 1 boincer umatlas  11202560 Nov 27 11:58 result.tar.gz
11:58:13 (3306072): run_atlas exited; CPU time 239659.402448
11:58:13 (3306072): called boinc_finish(0)

</stderr_txt>
]]>

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