Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:15:52 (284626): wrapper (7.7.26015): starting
17:15:52 (284626): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 17:15:52] Arguments: --nthreads 3
[2025-11-26 17:15:52] Threads: 3
[2025-11-26 17:15:52] Checking for CVMFS
[2025-11-26 17:15:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:15:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:15:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:15:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:15:53] 2.9.2.0 2184780 1005 73856 153326 3 88 35694122 36864000 0 130560 0 6835730 99.999 33068 732 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-26 17:15:53] CVMFS is ok
[2025-11-26 17:15:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:15:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:15:53] Further information can be found at the LHC@home message board.
[2025-11-26 17:15:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:15:53] Checking for apptainer binary...
[2025-11-26 17:15:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:15:53] Running /usr/bin/apptainer --version
[2025-11-26 17:15:53] apptainer version 1.4.1-1.1
[2025-11-26 17:15:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:15:53] thA335
[2025-11-26 17:15:53] apptainer works
[2025-11-26 17:15:53] Set ATHENA_PROC_NUMBER=3
[2025-11-26 17:15:53] Set ATHENA_CORE_NUMBER=3
[2025-11-26 17:15:53] Starting ATLAS job with PandaID=6897139602
[2025-11-26 17:15:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:20:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:20:12] 2025-11-26 16:19:22,347 | INFO     | update_server=False
[2025-11-26 17:20:12] 2025-11-26 16:19:22,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:20:12] 2025-11-26 16:19:22,348 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 17:20:12] 2025-11-26 16:19:22,348 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:20:12] 2025-11-26 16:19:22,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:20:12] 2025-11-26 16:19:22,349 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:20:12] 2025-11-26 16:19:22,350 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:20:12] 2025-11-26 16:19:22,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:20:12] 2025-11-26 16:19:22,701 | INFO     | all job control threads have been joined
[2025-11-26 17:20:12] 2025-11-26 16:19:22,916 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:20:12] 2025-11-26 16:19:22,917 | INFO     | aborting loop
[2025-11-26 17:20:12] 2025-11-26 16:19:22,930 | INFO     | all data control threads have been joined
[2025-11-26 17:20:12] 2025-11-26 16:19:23,353 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:23,355 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:23,631 | INFO     | all payload control threads have been joined
[2025-11-26 17:20:12] 2025-11-26 16:19:23,641 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:23,707 | INFO     | [job] control thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:23,811 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:20:12] 2025-11-26 16:19:23,922 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:23,936 | INFO     | [data] control thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,240 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,355 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,356 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,450 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,634 | INFO     | [job] validate thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,637 | INFO     | [payload] control thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,706 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,772 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:24,925 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:19:27,818 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:20:12] 2025-11-26 16:20:06,381 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:20:12] 2025-11-26 16:20:07,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567745267520)>', '<ExcThread(monitor, started 140567384135424)>']
[2025-11-26 17:20:12] 2025-11-26 16:20:08,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:20:12] 2025-11-26 16:20:08,587 | INFO     | [monitor] control thread has ended
[2025-11-26 17:20:12] 2025-11-26 16:20:12,789 | INFO     | all workflow threads have been joined
[2025-11-26 17:20:12] 2025-11-26 16:20:12,789 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:20:12] 2025-11-26 16:20:12,790 | INFO     | traces error code: 0
[2025-11-26 17:20:12] 2025-11-26 16:20:12,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:20:12] 2025-11-26 16:20:12,837 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:20:12] 2025-11-26 16:20:12,840 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:20:12] 2025-11-26 16:20:12,843 [wrapper] pilotpid: 288357
[2025-11-26 17:20:12] 2025-11-26 16:20:12,846 [wrapper] Pilot exit status: 0
[2025-11-26 17:20:12] 2025-11-26 16:20:12,853 [wrapper] pandaids: 6897139602
[2025-11-26 17:20:12] 2025-11-26 16:20:12,870 [wrapper] cleanup supervisor_pilot  288363 288358
[2025-11-26 17:20:12] 2025-11-26 16:20:12,873 [wrapper] Test setup, not cleaning
[2025-11-26 17:20:12] 2025-11-26 16:20:12,875 [wrapper] apfmon messages muted
[2025-11-26 17:20:12] 2025-11-26 16:20:12,878 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:20:12] 2025-11-26 16:20:12,880 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:20:12]  *** Error codes and diagnostics ***
[2025-11-26 17:20:12]     "exeErrorCode": 65,
[2025-11-26 17:20:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 17:20:12]     "pilotErrorCode": 1305,
[2025-11-26 17:20:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 17:20:12]  *** Listing of results directory ***
[2025-11-26 17:20:12] total 405032
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc      5112 Nov 25 17:55 queuedata.json
[2025-11-26 17:20:12] -rwx------ 1 boinc boinc     36292 Nov 25 17:56 runpilot2-wrapper.sh
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc       100 Nov 26 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:20:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 17:15 run_atlas
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc       105 Nov 26 17:15 job.xml
[2025-11-26 17:20:12] -rw-r--r-- 2 boinc boinc 410550406 Nov 26 17:15 EVNT.47483658._002189.pool.root.1
[2025-11-26 17:20:12] -rw-r--r-- 2 boinc boinc    590112 Nov 26 17:15 input.tar.gz
[2025-11-26 17:20:12] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:15 start_atlas.sh
[2025-11-26 17:20:12] drwxrwx--x 2 boinc boinc      4096 Nov 26 17:15 shared
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:15 boinc_setup_complete
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc      6196 Nov 26 17:15 init_data.xml
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:15 boinc_lockfile
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc      2786 Nov 26 17:15 pandaJob.out
[2025-11-26 17:20:12] -rw------- 1 boinc boinc    991855 Nov 26 17:16 agis_schedconf.cvmfs.json
[2025-11-26 17:20:12] -rw------- 1 boinc boinc   1516240 Nov 26 17:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:20:12] drwx------ 5 boinc boinc      4096 Nov 26 17:16 pilot3
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc       523 Nov 26 17:16 boinc_task_state.xml
[2025-11-26 17:20:12] -rw------- 1 boinc boinc       954 Nov 26 17:17 memory_monitor_summary.json
[2025-11-26 17:20:12] -rw------- 1 boinc boinc     56243 Nov 26 17:17 log.47556161._001725.job.log.tgz.1
[2025-11-26 17:20:12] -rw------- 1 boinc boinc        95 Nov 26 17:19 pilot_heartbeat.json
[2025-11-26 17:20:12] -rw------- 1 boinc boinc      8408 Nov 26 17:19 heartbeat.json
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc      8192 Nov 26 17:20 boinc_mmap_file
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc        23 Nov 26 17:20 wrapper_checkpoint.txt
[2025-11-26 17:20:12] -rw------- 1 boinc boinc      4556 Nov 26 17:20 pilotlog.txt
[2025-11-26 17:20:12] -rw------- 1 boinc boinc     93311 Nov 26 17:20 log.47556161._001725.job.log.1
[2025-11-26 17:20:12] -rw------- 1 boinc boinc       186 Nov 26 17:20 output.list
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc       620 Nov 26 17:20 runtime_log
[2025-11-26 17:20:12] -rw------- 1 boinc boinc    174080 Nov 26 17:20 result.tar.gz
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc      8744 Nov 26 17:20 runtime_log.err
[2025-11-26 17:20:12] -rw------- 1 boinc boinc       649 Nov 26 17:20 XF5KDmTWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAXJKDmXQaCxm.diag
[2025-11-26 17:20:12] -rw-r--r-- 1 boinc boinc      7709 Nov 26 17:20 stderr.txt
[2025-11-26 17:20:12] No HITS result produced
[2025-11-26 17:20:12]  *** Contents of shared directory: ***
[2025-11-26 17:20:12] total 401704
[2025-11-26 17:20:12] -rw-r--r-- 2 boinc boinc 410550406 Nov 26 17:15 ATLAS.root_0
[2025-11-26 17:20:12] -rw-r--r-- 2 boinc boinc    590112 Nov 26 17:15 input.tar.gz
[2025-11-26 17:20:12] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:15 start_atlas.sh
[2025-11-26 17:20:12] -rw------- 1 boinc boinc    174080 Nov 26 17:20 result.tar.gz
17:20:14 (284626): run_atlas exited; CPU time 32.068028
17:20:14 (284626): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN