Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:49:49 (3384510): wrapper (7.7.26015): starting
12:49:49 (3384510): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 12:49:49] Arguments: --nthreads 9
[2025-11-26 12:49:49] Threads: 9
[2025-11-26 12:49:49] Checking for CVMFS
[2025-11-26 12:49:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:49:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:49:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:49:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:49:50] 2.13.2.0 8544 34699 179980 153330 0 575 39637525 40960000 22260 16776704 0 73743145 99.797 37404727 38251 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 12:49:50] CVMFS is ok
[2025-11-26 12:49:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:49:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:49:50] Further information can be found at the LHC@home message board.
[2025-11-26 12:49:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:49:50] Checking for apptainer binary...
[2025-11-26 12:49:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:49:50] Running /usr/bin/apptainer --version
[2025-11-26 12:49:50] apptainer version 1.4.4-1.el9
[2025-11-26 12:49:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:50:11] c-212-10.aglt2.org
[2025-11-26 12:50:11] apptainer works
[2025-11-26 12:50:11] Set ATHENA_PROC_NUMBER=9
[2025-11-26 12:50:11] Set ATHENA_CORE_NUMBER=9
[2025-11-26 12:50:11] Starting ATLAS job with PandaID=6897372661
[2025-11-26 12:50:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:38:48]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:38:48] 2025-11-27 14:37:48,402 | INFO     | time since job start (74836s) is within the limit (172800.0s)
[2025-11-27 09:38:48] 2025-11-27 14:37:48,864 | INFO     | monitor loop #5034: job 0:6897372661 is in state 'finished'
[2025-11-27 09:38:48] 2025-11-27 14:37:48,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:38:48] 2025-11-27 14:37:50,482 | INFO     | PID=3389566 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 09:38:48] 2025-11-27 14:37:50,482 | INFO     | .. there are 18 such processes running
[2025-11-27 09:38:48] 2025-11-27 14:37:51,374 | INFO     | monitor loop #5035: job 0:6897372661 is in state 'finished'
[2025-11-27 09:38:48] 2025-11-27 14:37:51,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:38:48] 2025-11-27 14:37:51,485 | INFO     | time since job start (74839s) is within the limit (172800.0s)
[2025-11-27 09:38:48] 2025-11-27 14:37:53,492 | INFO     | time since job start (74841s) is within the limit (172800.0s)
[2025-11-27 09:38:48] 2025-11-27 14:37:53,879 | INFO     | monitor loop #5036: job 0:6897372661 is in state 'finished'
[2025-11-27 09:38:48] 2025-11-27 14:37:53,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:38:48] 2025-11-27 14:37:55,499 | INFO     | time since job start (74843s) is within the limit (172800.0s)
[2025-11-27 09:38:48] 2025-11-27 14:37:56,386 | INFO     | monitor loop #5037: job 0:6897372661 is in state 'finished'
[2025-11-27 09:38:48] 2025-11-27 14:37:56,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:38:48] 2025-11-27 14:37:57,506 | INFO     | time since job start (74845s) is within the limit (172800.0s)
[2025-11-27 09:38:48] 2025-11-27 14:37:58,712 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 09:38:48] 2025-11-27 14:37:58,718 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2911.8999166666677
[2025-11-27 09:38:48] 2025-11-27 14:37:58,734 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897372661/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:38:48] 2025-11-27 14:37:58,734 | INFO     | extracted standard info from prmon json
[2025-11-27 09:38:48] 2025-11-27 14:37:58,734 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:38:48] 2025-11-27 14:37:58,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:38:48] 2025-11-27 14:37:58,751 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:38:48] 2025-11-27 14:37:58,753 | INFO     | sum of square deviations: 571415067678.1539
[2025-11-27 09:38:48] 2025-11-27 14:37:58,817 | INFO     | sum of deviations: 2445504111336.8833
[2025-11-27 09:38:48] 2025-11-27 14:37:58,818 | INFO     | mean x: 1764216835.5595431
[2025-11-27 09:38:48] 2025-11-27 14:37:58,818 | INFO     | mean y: 3045780.6386623164
[2025-11-27 09:38:48] 2025-11-27 14:37:58,818 | INFO     | intersect: -7547331814.725464
[2025-11-27 09:38:48] 2025-11-27 14:37:58,819 | INFO     | chi2: 22.726600055906037
[2025-11-27 09:38:48] 2025-11-27 14:37:58,820 | INFO     | sum of square deviations: 564452756575.0173
[2025-11-27 09:38:48] 2025-11-27 14:37:58,897 | INFO     | sum of deviations: 2873825037344.826
[2025-11-27 09:38:48] 2025-11-27 14:37:58,897 | INFO     | mean x: 1764216683.063882
[2025-11-27 09:38:48] 2025-11-27 14:37:58,897 | INFO     | mean y: 3055160.3996723997
[2025-11-27 09:38:48] 2025-11-27 14:37:58,897 | INFO     | intersect: -8979184745.47738
[2025-11-27 09:38:48] 2025-11-27 14:37:58,902 | INFO     | chi2: 19.365692930114733
[2025-11-27 09:38:48] 2025-11-27 14:37:58,902 | INFO     | current chi2=19.365692930114733 (change=14.788429054604205 %)
[2025-11-27 09:38:48] 2025-11-27 14:37:58,903 | INFO     | right removable region: 1220
[2025-11-27 09:38:48] 2025-11-27 14:37:58,904 | INFO     | sum of square deviations: 564451964185.0177
[2025-11-27 09:38:48] 2025-11-27 14:37:58,948 | INFO     | monitor loop #5038: job 0:6897372661 is in state 'finished'
[2025-11-27 09:38:48] 2025-11-27 14:37:58,948 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:38:48] 2025-11-27 14:37:58,979 | INFO     | sum of deviations: 1964753223206.4658
[2025-11-27 09:38:48] 2025-11-27 14:37:58,979 | INFO     | mean x: 1764216988.063882
[2025-11-27 09:38:48] 2025-11-27 14:37:58,979 | INFO     | mean y: 3056308.4684684686
[2025-11-27 09:38:48] 2025-11-27 14:37:58,979 | INFO     | intersect: -6137857770.444963
[2025-11-27 09:38:48] 2025-11-27 14:37:58,980 | INFO     | chi2: 19.362521508772552
[2025-11-27 09:38:48] 2025-11-27 14:37:58,981 | INFO     | current chi2=19.362521508772552 (change=14.802383721533612 %)
[2025-11-27 09:38:48] 2025-11-27 14:37:58,981 | INFO     | left removable region: 10
[2025-11-27 09:38:48] 2025-11-27 14:37:58,982 | INFO     | sum of square deviations: 549333889028.3869
[2025-11-27 09:38:48] 2025-11-27 14:37:59,042 | INFO     | sum of deviations: 2335614389701.5737
[2025-11-27 09:38:48] 2025-11-27 14:37:59,043 | INFO     | mean x: 1764216957.5710745
[2025-11-27 09:38:48] 2025-11-27 14:37:59,043 | INFO     | mean y: 3070642.679338843
[2025-11-27 09:38:48] 2025-11-27 14:37:59,043 | INFO     | intersect: -7497887508.558267
[2025-11-27 09:38:48] 2025-11-27 14:37:59,044 | INFO     | chi2: 15.077518609071658
[2025-11-27 09:38:48] 2025-11-27 14:37:59,044 | INFO     | current memory leak: 4.25 B/s (using 1210 data points, chi2=15.08)
[2025-11-27 09:38:48] 2025-11-27 14:37:59,049 | INFO     | could have reported an average CPU frequency of 3002 MHz (45 samples)
[2025-11-27 09:38:48] 2025-11-27 14:37:59,049 | INFO     | ..............................
[2025-11-27 09:38:48] 2025-11-27 14:37:59,049 | INFO     | . Timing measurements:
[2025-11-27 09:38:48] 2025-11-27 14:37:59,049 | INFO     | . get job = 0 s
[2025-11-27 09:38:48] 2025-11-27 14:37:59,049 | INFO     | . initial setup = 3 s
[2025-11-27 09:38:48] 2025-11-27 14:37:59,050 | INFO     | . payload setup = 11 s
[2025-11-27 09:38:48] 2025-11-27 14:37:59,050 | INFO     | . stage-in = 0 s
[2025-11-27 09:38:48] 2025-11-27 14:37:59,050 | INFO     | . payload execution = 74784 s
[2025-11-27 09:38:48] 2025-11-27 14:37:59,050 | INFO     | . stage-out = 6 s
[2025-11-27 09:38:48] 2025-11-27 14:37:59,050 | INFO     | . log creation = 1 s
[2025-11-27 09:38:48] 2025-11-27 14:37:59,050 | INFO     | ..............................
[2025-11-27 09:38:48] 2025-11-27 14:37:59,286 | INFO     | 
[2025-11-27 09:38:48] 2025-11-27 14:37:59,289 | INFO     | job summary report
[2025-11-27 09:38:48] 2025-11-27 14:37:59,289 | INFO     | --------------------------------------------------
[2025-11-27 09:38:48] 2025-11-27 14:37:59,289 | INFO     | PanDA job id: 6897372661
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | task id: 47556173
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | errors: (none)
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | pilot state: finished 
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | transexitcode: 0
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | exeerrorcode: 0
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | exeerrordiag: 
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | exitcode: 0
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | exitmsg: OK
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | cpuconsumptiontime: 214965 s
[2025-11-27 09:38:48] 2025-11-27 14:37:59,290 | INFO     | nevents: 1000
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | neventsw: 0
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | pid: 3396275
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | pgrp: 3396275
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | corecount: 9
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | event service: False
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | sizes: {0: 2284092, 1: 2284291, 9: 2284553, 12: 2284581, 74800: 2344456, 74808: 2353450, 74811: 2353634, 74825: 2353880}
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | --------------------------------------------------
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | 
[2025-11-27 09:38:48] 2025-11-27 14:37:59,291 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 09:38:48] 2025-11-27 14:37:59,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,360 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,360 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,360 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,360 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,360 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:38:48] 2025-11-27 14:37:59,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,362 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:38:48] 2025-11-27 14:37:59,362 | INFO     | job 6897372661 has completed (purged errors)
[2025-11-27 09:38:48] 2025-11-27 14:37:59,362 | INFO     | overall cleanup function is called
[2025-11-27 09:38:48] 2025-11-27 14:38:00,433 | INFO     | --- collectZombieJob: --- 10, [3396275]
[2025-11-27 09:38:48] 2025-11-27 14:38:00,433 | INFO     | zombie collector waiting for pid 3396275
[2025-11-27 09:38:48] 2025-11-27 14:38:00,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:38:48] 2025-11-27 14:38:00,433 | INFO     | collected zombie processes
[2025-11-27 09:38:48] 2025-11-27 14:38:00,433 | INFO     | will attempt to kill all subprocesses of pid=3396275
[2025-11-27 09:38:48] 2025-11-27 14:38:01,291 | INFO     | process IDs to be killed: [3396275] (in reverse order)
[2025-11-27 09:38:48] 2025-11-27 14:38:01,558 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:38:48] 2025-11-27 14:38:01,558 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:38:48] 2025-11-27 14:38:01,613 | INFO     | did not find any defunct processes belonging to 3396275
[2025-11-27 09:38:48] 2025-11-27 14:38:01,646 | INFO     | did not find any defunct processes belonging to 3396275
[2025-11-27 09:38:48] 2025-11-27 14:38:01,654 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:38:48] 2025-11-27 14:38:01,654 | INFO     | ready for new job
[2025-11-27 09:38:48] 2025-11-27 14:38:01,655 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:38:48] 2025-11-27 14:38:01,665 | INFO     | ***************************************
[2025-11-27 09:38:48] 2025-11-27 14:38:01,665 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:38:48] 2025-11-27 14:38:01,665 | INFO     | ***************************************
[2025-11-27 09:38:48] 2025-11-27 14:38:01,665 | INFO     | 
[2025-11-27 09:38:48] 2025-11-27 14:38:01,679 | INFO     | architecture information:
[2025-11-27 09:38:48] 2025-11-27 14:38:01,680 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:38:48] 2025-11-27 14:38:01,823 | INFO     | cat /etc/os-release:
[2025-11-27 09:38:48] NAME="CentOS Linux"
[2025-11-27 09:38:48] VERSION="7 (Core)"
[2025-11-27 09:38:48] ID="centos"
[2025-11-27 09:38:48] ID_LIKE="rhel fedora"
[2025-11-27 09:38:48] VERSION_ID="7"
[2025-11-27 09:38:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:38:48] ANSI_COLOR="0;31"
[2025-11-27 09:38:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:38:48] HOME_URL="https://www.centos.org/"
[2025-11-27 09:38:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:38:48] 
[2025-11-27 09:38:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:38:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:38:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:38:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:38:48] 
[2025-11-27 09:38:48] 2025-11-27 14:38:01,824 | INFO     | ***************************************
[2025-11-27 09:38:48] 2025-11-27 14:38:02,349 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 09:38:48] 2025-11-27 14:38:02,422 | INFO     | sufficient remaining disk space (122069975040 B)
[2025-11-27 09:38:48] 2025-11-27 14:38:02,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:38:48] 2025-11-27 14:38:02,422 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:38:48] 2025-11-27 14:38:02,422 | INFO     | update_server=False
[2025-11-27 09:38:48] 2025-11-27 14:38:02,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:38:48] 2025-11-27 14:38:02,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:38:48] 2025-11-27 14:38:02,481 | INFO     | aborting loop
[2025-11-27 09:38:48] 2025-11-27 14:38:02,985 | INFO     | all payload control threads have been joined
[2025-11-27 09:38:48] 2025-11-27 14:38:02,985 | INFO     | all data control threads have been joined
[2025-11-27 09:38:48] 2025-11-27 14:38:03,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:38:48] 2025-11-27 14:38:03,428 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:03,496 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:03,497 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:03,608 | INFO     | all job control threads have been joined
[2025-11-27 09:38:48] 2025-11-27 14:38:03,991 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:03,995 | INFO     | [data] control thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:03,995 | INFO     | [payload] control thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:04,005 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:04,185 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:04,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:38:48] 2025-11-27 14:38:04,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:38:48] 2025-11-27 14:38:04,391 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:04,392 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:04,577 | INFO     | [job] validate thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:04,614 | INFO     | [job] control thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:05,001 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:05,056 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:05,277 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:08,376 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:38:48] 2025-11-27 14:38:31,733 | INFO     | PID=3389566 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:38:48] 2025-11-27 14:38:31,733 | INFO     | .. there are 18 such processes running
[2025-11-27 09:38:48] 2025-11-27 14:38:31,734 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:38:48] 2025-11-27 14:38:31,734 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:38:48] 2025-11-27 14:38:31,734 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:38:48] 2025-11-27 14:38:41,481 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:38:48] 2025-11-27 14:38:42,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140190115792704)>', '<ExcThread(monitor, started 140189376689920)>']
[2025-11-27 09:38:48] 2025-11-27 14:38:42,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:38:48] 2025-11-27 14:38:42,829 | INFO     | [monitor] control thread has ended
[2025-11-27 09:38:48] 2025-11-27 14:38:47,223 | INFO     | all workflow threads have been joined
[2025-11-27 09:38:48] 2025-11-27 14:38:47,223 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:38:48] 2025-11-27 14:38:47,223 | INFO     | traces error code: 0
[2025-11-27 09:38:48] 2025-11-27 14:38:47,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:38:48] 2025-11-27 14:38:47,632 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:38:48] 2025-11-27 14:38:47,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:38:48] 2025-11-27 14:38:47,712 [wrapper] pilotpid: 3389566
[2025-11-27 09:38:48] 2025-11-27 14:38:47,763 [wrapper] Pilot exit status: 0
[2025-11-27 09:38:48] 2025-11-27 14:38:47,917 [wrapper] pandaids: 6897372661
[2025-11-27 09:38:48] 2025-11-27 14:38:48,030 [wrapper] cleanup supervisor_pilot 2135927 3389567
[2025-11-27 09:38:48] 2025-11-27 14:38:48,049 [wrapper] Test setup, not cleaning
[2025-11-27 09:38:48] 2025-11-27 14:38:48,064 [wrapper] apfmon messages muted
[2025-11-27 09:38:48] 2025-11-27 14:38:48,079 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:38:48] 2025-11-27 14:38:48,109 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:38:48]  *** Error codes and diagnostics ***
[2025-11-27 09:38:48]     "exeErrorCode": 0,
[2025-11-27 09:38:48]     "exeErrorDiag": "",
[2025-11-27 09:38:48]     "pilotErrorCode": 0,
[2025-11-27 09:38:48]     "pilotErrorDiag": "",
[2025-11-27 09:38:48]  *** Listing of results directory ***
[2025-11-27 09:38:48] total 1326784
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 09:38:48] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas       100 Nov 26 12:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:38:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 12:49 run_atlas
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas       105 Nov 26 12:49 job.xml
[2025-11-27 09:38:48] -rw-r--r--. 2 boincer umatlas 410045817 Nov 26 12:49 EVNT.47483658._003089.pool.root.1
[2025-11-27 09:38:48] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 12:49 input.tar.gz
[2025-11-27 09:38:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 12:49 shared
[2025-11-27 09:38:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 12:49 start_atlas.sh
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas         0 Nov 26 12:49 boinc_lockfile
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 12:50 pandaJob.out
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas        57 Nov 26 12:50 setup.sh.local
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas    991530 Nov 26 12:50 agis_schedconf.cvmfs.json
[2025-11-27 09:38:48] drwx------. 5 boincer umatlas      4096 Nov 26 12:50 pilot3
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas       533 Nov 27 09:02 boinc_task_state.xml
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 09:36 init_data.xml
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas 919611637 Nov 27 09:36 HITS.47556173._000719.pool.root.1
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas      1062 Nov 27 09:37 memory_monitor_summary.json
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas   1516240 Nov 27 09:37 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas   2450145 Nov 27 09:37 log.47556173._000719.job.log.tgz.1
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas      8611 Nov 27 09:37 heartbeat.json
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas        95 Nov 27 09:38 pilot_heartbeat.json
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 09:38 boinc_mmap_file
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas        29 Nov 27 09:38 wrapper_checkpoint.txt
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas      4825 Nov 27 09:38 pilotlog.txt
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas  10069239 Nov 27 09:38 log.47556173._000719.job.log.1
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas       353 Nov 27 09:38 output.list
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas       620 Nov 27 09:38 runtime_log
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas  12544000 Nov 27 09:38 result.tar.gz
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 09:38 runtime_log.err
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas       664 Nov 27 09:38 0vALDm0VBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLSMKDmP9ux1m.diag
[2025-11-27 09:38:48] -rw-r--r--. 1 boincer umatlas     21855 Nov 27 09:38 stderr.txt
[2025-11-27 09:38:48] HITS file was successfully produced:
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas 919611637 Nov 27 09:36 shared/HITS.pool.root.1
[2025-11-27 09:38:48]  *** Contents of shared directory: ***
[2025-11-27 09:38:48] total 1311352
[2025-11-27 09:38:48] -rw-r--r--. 2 boincer umatlas 410045817 Nov 26 12:49 ATLAS.root_0
[2025-11-27 09:38:48] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 12:49 input.tar.gz
[2025-11-27 09:38:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 12:49 start_atlas.sh
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas 919611637 Nov 27 09:36 HITS.pool.root.1
[2025-11-27 09:38:48] -rw-------. 1 boincer umatlas  12544000 Nov 27 09:38 result.tar.gz
09:38:50 (3384510): run_atlas exited; CPU time 215462.561484
09:38:50 (3384510): called boinc_finish(0)

</stderr_txt>
]]>

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