Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:45:48 (3912141): wrapper (7.7.26015): starting
23:45:48 (3912141): wrapper: running run_atlas (--nthreads 6)
[2025-11-27 23:45:48] Arguments: --nthreads 6
[2025-11-27 23:45:48] Threads: 6
[2025-11-27 23:45:48] Checking for CVMFS
[2025-11-27 23:45:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 23:46:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 23:46:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 23:46:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 23:46:07] 2.13.3.0 3912018 0 30944 153368 3 1 43756837 52428801 0 130560 0 0 0.000 1293 59 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-27 23:46:07] CVMFS is ok
[2025-11-27 23:46:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 23:46:07] Checking for apptainer binary...
[2025-11-27 23:46:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 23:46:07] Running /usr/bin/apptainer --version
[2025-11-27 23:46:07] apptainer version 1.4.4-1.el9
[2025-11-27 23:46:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 23:46:07] testio008
[2025-11-27 23:46:07] apptainer works
[2025-11-27 23:46:07] Set ATHENA_PROC_NUMBER=6
[2025-11-27 23:46:07] Set ATHENA_CORE_NUMBER=6
[2025-11-27 23:46:07] Starting ATLAS job with PandaID=6895384668
[2025-11-27 23:46:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:52:34]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:52:34] 2025-11-27 21:51:40,724 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:52:34] 2025-11-27 21:51:40,726 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:52:34] 2025-11-27 21:51:40,726 | INFO     | sum of square deviations: 22484514015.84639
[2025-11-28 06:52:34] 2025-11-27 21:51:40,727 | INFO     | sum of deviations: 443209798225.2395
[2025-11-28 06:52:34] 2025-11-27 21:51:40,728 | INFO     | mean x: 1764267572.0191846
[2025-11-28 06:52:34] 2025-11-27 21:51:40,728 | INFO     | mean y: 2634319.470023981
[2025-11-28 06:52:34] 2025-11-27 21:51:40,728 | INFO     | intersect: -34774220277.38132
[2025-11-28 06:52:34] 2025-11-27 21:51:40,728 | INFO     | chi2: 7.567014956414112
[2025-11-28 06:52:34] 2025-11-27 21:51:40,728 | INFO     | sum of square deviations: 21685375890.84471
[2025-11-28 06:52:34] 2025-11-27 21:51:40,729 | INFO     | sum of deviations: 567514965076.4125
[2025-11-28 06:52:34] 2025-11-27 21:51:40,729 | INFO     | mean x: 1764267419.5194175
[2025-11-28 06:52:34] 2025-11-27 21:51:40,729 | INFO     | mean y: 2658048.38592233
[2025-11-28 06:52:34] 2025-11-27 21:51:40,729 | INFO     | intersect: -46168926341.66049
[2025-11-28 06:52:34] 2025-11-27 21:51:40,729 | INFO     | chi2: 4.582948156641294
[2025-11-28 06:52:34] 2025-11-27 21:51:40,729 | INFO     | current chi2=4.582948156641294 (change=39.43519098298333 %)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,729 | INFO     | sum of square deviations: 20905400915.842796
[2025-11-28 06:52:34] 2025-11-27 21:51:40,730 | INFO     | sum of deviations: 561787160702.9065
[2025-11-28 06:52:34] 2025-11-27 21:51:40,730 | INFO     | mean x: 1764267267.019656
[2025-11-28 06:52:34] 2025-11-27 21:51:40,730 | INFO     | mean y: 2656918.7616707617
[2025-11-28 06:52:34] 2025-11-27 21:51:40,730 | INFO     | intersect: -47408186941.63656
[2025-11-28 06:52:34] 2025-11-27 21:51:40,730 | INFO     | chi2: 4.545216544878128
[2025-11-28 06:52:34] 2025-11-27 21:51:40,730 | INFO     | current chi2=4.545216544878128 (change=0.8233043550468132 %)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,730 | INFO     | right removable region: 406
[2025-11-28 06:52:34] 2025-11-27 21:51:40,731 | INFO     | sum of square deviations: 21685371010.84471
[2025-11-28 06:52:34] 2025-11-27 21:51:40,732 | INFO     | sum of deviations: 314826411928.40247
[2025-11-28 06:52:34] 2025-11-27 21:51:40,732 | INFO     | mean x: 1764267724.5194175
[2025-11-28 06:52:34] 2025-11-27 21:51:40,732 | INFO     | mean y: 2658799.5121359224
[2025-11-28 06:52:34] 2025-11-27 21:51:40,732 | INFO     | intersect: -25610833223.00224
[2025-11-28 06:52:34] 2025-11-27 21:51:40,732 | INFO     | chi2: 4.6483564990135795
[2025-11-28 06:52:34] 2025-11-27 21:51:40,732 | INFO     | current chi2=4.6483564990135795 (change=38.570803338066064 %)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,732 | INFO     | sum of square deviations: 20905391155.842796
[2025-11-28 06:52:34] 2025-11-27 21:51:40,733 | INFO     | sum of deviations: 225002794384.79364
[2025-11-28 06:52:34] 2025-11-27 21:51:40,733 | INFO     | mean x: 1764267877.019656
[2025-11-28 06:52:34] 2025-11-27 21:51:40,733 | INFO     | mean y: 2676328.5257985257
[2025-11-28 06:52:34] 2025-11-27 21:51:40,733 | INFO     | intersect: -18985975900.629128
[2025-11-28 06:52:34] 2025-11-27 21:51:40,733 | INFO     | chi2: 3.221085289755118
[2025-11-28 06:52:34] 2025-11-27 21:51:40,733 | INFO     | current chi2=3.221085289755118 (change=30.704856857716063 %)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,733 | INFO     | sum of square deviations: 20144341888.340878
[2025-11-28 06:52:34] 2025-11-27 21:51:40,734 | INFO     | sum of deviations: 203709917381.5347
[2025-11-28 06:52:34] 2025-11-27 21:51:40,734 | INFO     | mean x: 1764268029.5199006
[2025-11-28 06:52:34] 2025-11-27 21:51:40,734 | INFO     | mean y: 2680590.3706467664
[2025-11-28 06:52:34] 2025-11-27 21:51:40,734 | INFO     | intersect: -17838502632.41781
[2025-11-28 06:52:34] 2025-11-27 21:51:40,735 | INFO     | chi2: 3.194754153038218
[2025-11-28 06:52:34] 2025-11-27 21:51:40,735 | INFO     | current chi2=3.194754153038218 (change=0.8174616425292396 %)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,735 | INFO     | left removable region: 30
[2025-11-28 06:52:34] 2025-11-27 21:51:40,735 | INFO     | sum of square deviations: 16483060125.82973
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | sum of deviations: 267955408398.1916
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | mean x: 1764268151.5212767
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | mean y: 2717020.60106383
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | intersect: -28677952069.721092
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | chi2: 0.08702259703501711
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | current memory leak: 16.26 B/s (using 376 data points, chi2=0.09)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | could have reported an average CPU frequency of 3713 MHz (17 samples)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | ..............................
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | . Timing measurements:
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | . get job = 0 s
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | . initial setup = 6 s
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | . payload setup = 3 s
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | . stage-in = 0 s
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | . payload execution = 25408 s
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | . stage-out = 3 s
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | . log creation = 0 s
[2025-11-28 06:52:34] 2025-11-27 21:51:40,736 | INFO     | ..............................
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | 
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | job summary report
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | --------------------------------------------------
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | PanDA job id: 6895384668
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | task id: 47556149
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | errors: (none)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | pilot state: finished 
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | transexitcode: 0
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | exeerrorcode: 0
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | exeerrordiag: 
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | exitcode: 0
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | exitmsg: OK
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | cpuconsumptiontime: 145541 s
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | nevents: 1000
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | neventsw: 0
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | pid: 3944271
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | pgrp: 3944271
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | corecount: 6
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | event service: False
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | sizes: {0: 2284316, 2: 2284578, 10: 2284606, 25414: 2321027, 25418: 2330023, 25421: 2330079, 25422: 2330517}
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | --------------------------------------------------
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | 
[2025-11-28 06:52:34] 2025-11-27 21:51:40,758 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | job 6895384668 has completed (purged errors)
[2025-11-28 06:52:34] 2025-11-27 21:51:40,766 | INFO     | overall cleanup function is called
[2025-11-28 06:52:34] 2025-11-27 21:51:41,774 | INFO     | --- collectZombieJob: --- 10, [3944271]
[2025-11-28 06:52:34] 2025-11-27 21:51:41,774 | INFO     | zombie collector waiting for pid 3944271
[2025-11-28 06:52:34] 2025-11-27 21:51:41,774 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:52:34] 2025-11-27 21:51:41,774 | INFO     | collected zombie processes
[2025-11-28 06:52:34] 2025-11-27 21:51:41,774 | INFO     | will attempt to kill all subprocesses of pid=3944271
[2025-11-28 06:52:34] 2025-11-27 21:51:41,793 | INFO     | process IDs to be killed: [3944271] (in reverse order)
[2025-11-28 06:52:34] 2025-11-27 21:51:41,808 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:52:34] 2025-11-27 21:51:41,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:52:34] 2025-11-27 21:51:41,809 | INFO     | did not find any defunct processes belonging to 3944271
[2025-11-28 06:52:34] 2025-11-27 21:51:41,810 | INFO     | did not find any defunct processes belonging to 3944271
[2025-11-28 06:52:34] 2025-11-27 21:51:41,811 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:52:34] 2025-11-27 21:51:41,811 | INFO     | ready for new job
[2025-11-28 06:52:34] 2025-11-27 21:51:41,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:52:34] 2025-11-27 21:51:41,812 | INFO     | ***************************************
[2025-11-28 06:52:34] 2025-11-27 21:51:41,812 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:52:34] 2025-11-27 21:51:41,812 | INFO     | ***************************************
[2025-11-28 06:52:34] 2025-11-27 21:51:41,812 | INFO     | 
[2025-11-28 06:52:34] 2025-11-27 21:51:41,812 | INFO     | architecture information:
[2025-11-28 06:52:34] 2025-11-27 21:51:41,812 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:52:34] 2025-11-27 21:51:41,817 | INFO     | cat /etc/os-release:
[2025-11-28 06:52:34] NAME="CentOS Linux"
[2025-11-28 06:52:34] VERSION="7 (Core)"
[2025-11-28 06:52:34] ID="centos"
[2025-11-28 06:52:34] ID_LIKE="rhel fedora"
[2025-11-28 06:52:34] VERSION_ID="7"
[2025-11-28 06:52:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:52:34] ANSI_COLOR="0;31"
[2025-11-28 06:52:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:52:34] HOME_URL="https://www.centos.org/"
[2025-11-28 06:52:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:52:34] 
[2025-11-28 06:52:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:52:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:52:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:52:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:52:34] 
[2025-11-28 06:52:34] 2025-11-27 21:51:41,817 | INFO     | ***************************************
[2025-11-28 06:52:34] 2025-11-27 21:51:42,320 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-28 06:52:34] 2025-11-27 21:51:42,326 | INFO     | sufficient remaining disk space (288445431808 B)
[2025-11-28 06:52:34] 2025-11-27 21:51:42,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | INFO     | update_server=False
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:52:34] 2025-11-27 21:51:42,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:52:34] 2025-11-27 21:51:42,546 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 06:52:34] 2025-11-27 21:51:42,546 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 06:52:34] 2025-11-27 21:51:42,546 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:52:34] 2025-11-27 21:51:42,546 | INFO     | will abort loop
[2025-11-28 06:52:34] 2025-11-27 21:51:42,583 | INFO     | all data control threads have been joined
[2025-11-28 06:52:34] 2025-11-27 21:51:43,307 | INFO     | all payload control threads have been joined
[2025-11-28 06:52:34] 2025-11-27 21:51:43,332 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:43,332 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:43,551 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:43,572 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:43,588 | INFO     | [data] control thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:43,607 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:43,680 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:43,794 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:44,010 | INFO     | all job control threads have been joined
[2025-11-28 06:52:34] 2025-11-27 21:51:44,149 | INFO     | [job] validate thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:44,271 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:44,313 | INFO     | [payload] control thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:44,332 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:44,439 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:44,729 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:45,015 | INFO     | [job] control thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:51:45,377 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:52:34] 2025-11-27 21:51:49,383 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:52:34] 2025-11-27 21:52:28,016 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:52:34] 2025-11-27 21:52:29,021 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497871411008)>', '<ExcThread(monitor, started 140497230227200)>']
[2025-11-28 06:52:34] 2025-11-27 21:52:29,513 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:52:34] 2025-11-27 21:52:29,513 | INFO     | [monitor] control thread has ended
[2025-11-28 06:52:34] 2025-11-27 21:52:34,046 | INFO     | all workflow threads have been joined
[2025-11-28 06:52:34] 2025-11-27 21:52:34,046 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:52:34] 2025-11-27 21:52:34,046 | INFO     | traces error code: 0
[2025-11-28 06:52:34] 2025-11-27 21:52:34,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:52:34] 2025-11-27 21:52:34,081 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:52:34] 2025-11-27 21:52:34,082 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:52:34] 2025-11-27 21:52:34,083 [wrapper] pilotpid: 3923912
[2025-11-28 06:52:34] 2025-11-27 21:52:34,084 [wrapper] Pilot exit status: 0
[2025-11-28 06:52:34] 2025-11-27 21:52:34,087 [wrapper] pandaids: 6895384668
[2025-11-28 06:52:34] 2025-11-27 21:52:34,098 [wrapper] cleanup supervisor_pilot 4061797 3923913
[2025-11-28 06:52:34] 2025-11-27 21:52:34,099 [wrapper] Test setup, not cleaning
[2025-11-28 06:52:34] 2025-11-27 21:52:34,101 [wrapper] apfmon messages muted
[2025-11-28 06:52:34] 2025-11-27 21:52:34,102 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:52:34] 2025-11-27 21:52:34,103 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:52:34]  *** Error codes and diagnostics ***
[2025-11-28 06:52:34]     "exeErrorCode": 0,
[2025-11-28 06:52:34]     "exeErrorDiag": "",
[2025-11-28 06:52:34]     "pilotErrorCode": 0,
[2025-11-28 06:52:34]     "pilotErrorDiag": "",
[2025-11-28 06:52:34]  *** Listing of results directory ***
[2025-11-28 06:52:34] total 1299216
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc    576529 Nov 24 13:40 pilot3.tar.gz
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc      5112 Nov 24 14:05 queuedata.json
[2025-11-28 06:52:34] -rwx------. 1 boinc boinc     36292 Nov 24 14:06 runpilot2-wrapper.sh
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc       100 Nov 27 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:52:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 23:45 run_atlas
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc       105 Nov 27 23:45 job.xml
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc      9516 Nov 27 23:45 init_data.xml
[2025-11-28 06:52:34] -rw-r--r--. 2 boinc boinc 409251832 Nov 27 23:45 EVNT.47483658._001226.pool.root.1
[2025-11-28 06:52:34] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:45 start_atlas.sh
[2025-11-28 06:52:34] drwxrwx--x. 2 boinc boinc        68 Nov 27 23:45 shared
[2025-11-28 06:52:34] -rw-r--r--. 2 boinc boinc    590102 Nov 27 23:45 input.tar.gz
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc         0 Nov 27 23:45 boinc_lockfile
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc      2786 Nov 27 23:46 pandaJob.out
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc    991580 Nov 27 23:47 agis_schedconf.cvmfs.json
[2025-11-28 06:52:34] drwx------. 5 boinc boinc      4096 Nov 27 23:47 pilot3
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc       532 Nov 28 06:45 boinc_task_state.xml
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc        95 Nov 28 06:50 pilot_heartbeat.json
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc 907136461 Nov 28 06:51 HITS.47556149._002122.pool.root.1
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc      1028 Nov 28 06:51 memory_monitor_summary.json
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc   1516240 Nov 28 06:51 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc   1464918 Nov 28 06:51 log.47556149._002122.job.log.tgz.1
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc      8586 Nov 28 06:51 heartbeat.json
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc        29 Nov 28 06:52 wrapper_checkpoint.txt
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc      8192 Nov 28 06:52 boinc_mmap_file
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc      4740 Nov 28 06:52 pilotlog.txt
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc   3586243 Nov 28 06:52 log.47556149._002122.job.log.1
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc       353 Nov 28 06:52 output.list
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc       620 Nov 28 06:52 runtime_log
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc   5068800 Nov 28 06:52 result.tar.gz
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc      8792 Nov 28 06:52 runtime_log.err
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc       650 Nov 28 06:52 ojzLDmFxdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmURLKDm0VjMhm.diag
[2025-11-28 06:52:34] -rw-r--r--. 1 boinc boinc     20730 Nov 28 06:52 stderr.txt
[2025-11-28 06:52:34] HITS file was successfully produced:
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc 907136461 Nov 28 06:51 shared/HITS.pool.root.1
[2025-11-28 06:52:34]  *** Contents of shared directory: ***
[2025-11-28 06:52:34] total 1291084
[2025-11-28 06:52:34] -rw-r--r--. 2 boinc boinc 409251832 Nov 27 23:45 ATLAS.root_0
[2025-11-28 06:52:34] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:45 start_atlas.sh
[2025-11-28 06:52:34] -rw-r--r--. 2 boinc boinc    590102 Nov 27 23:45 input.tar.gz
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc 907136461 Nov 28 06:51 HITS.pool.root.1
[2025-11-28 06:52:34] -rw-------. 1 boinc boinc   5068800 Nov 28 06:52 result.tar.gz
06:52:35 (3912141): run_atlas exited; CPU time 145605.950516
06:52:35 (3912141): called boinc_finish(0)

</stderr_txt>
]]>

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