Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:08:28 (3444976): wrapper (7.7.26015): starting
13:08:28 (3444976): wrapper: running run_atlas (--nthreads 2)
[2025-11-29 13:08:28] Arguments: --nthreads 2
[2025-11-29 13:08:28] Threads: 2
[2025-11-29 13:08:28] Checking for CVMFS
[2025-11-29 13:08:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 13:08:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 13:08:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 13:08:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 13:08:28] 2.9.2.0 1656350 15394 62976 153442 3 80 32592279 36864000 0 130560 0 4953480 99.882 825243 3024 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-29 13:08:28] CVMFS is ok
[2025-11-29 13:08:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 13:08:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 13:08:28] Further information can be found at the LHC@home message board.
[2025-11-29 13:08:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 13:08:28] Checking for apptainer binary...
[2025-11-29 13:08:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 13:08:28] Running /usr/bin/apptainer --version
[2025-11-29 13:08:28] apptainer version 1.4.1-1.1
[2025-11-29 13:08:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 13:08:28] thA314b
[2025-11-29 13:08:28] apptainer works
[2025-11-29 13:08:28] Set ATHENA_PROC_NUMBER=2
[2025-11-29 13:08:28] Set ATHENA_CORE_NUMBER=2
[2025-11-29 13:08:28] Starting ATLAS job with PandaID=6897139699
[2025-11-29 13:08:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 01:21:52]  *** The last 200 lines of the pilot log: ***
[2025-11-30 01:21:52] 2025-11-30 00:21:21,402 | INFO     | will attempt to kill all subprocesses of pid=3455117
[2025-11-30 01:21:52] 2025-11-30 00:21:21,434 | INFO     | process IDs to be killed: [3455117] (in reverse order)
[2025-11-30 01:21:52] 2025-11-30 00:21:21,453 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 01:21:52] 2025-11-30 00:21:21,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 01:21:52] 2025-11-30 00:21:21,454 | INFO     | did not find any defunct processes belonging to 3455117
[2025-11-30 01:21:52] 2025-11-30 00:21:21,455 | INFO     | did not find any defunct processes belonging to 3455117
[2025-11-30 01:21:52] 2025-11-30 00:21:21,455 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 01:21:52] 2025-11-30 00:21:21,455 | INFO     | ready for new job
[2025-11-30 01:21:52] 2025-11-30 00:21:21,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 01:21:52] 2025-11-30 00:21:21,456 | INFO     | ***************************************
[2025-11-30 01:21:52] 2025-11-30 00:21:21,456 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 01:21:52] 2025-11-30 00:21:21,457 | INFO     | ***************************************
[2025-11-30 01:21:52] 2025-11-30 00:21:21,457 | INFO     | 
[2025-11-30 01:21:52] 2025-11-30 00:21:21,457 | INFO     | architecture information:
[2025-11-30 01:21:52] 2025-11-30 00:21:21,457 | INFO     | executing command: cat /etc/os-release
[2025-11-30 01:21:52] 2025-11-30 00:21:21,465 | INFO     | cat /etc/os-release:
[2025-11-30 01:21:52] NAME="CentOS Linux"
[2025-11-30 01:21:52] VERSION="7 (Core)"
[2025-11-30 01:21:52] ID="centos"
[2025-11-30 01:21:52] ID_LIKE="rhel fedora"
[2025-11-30 01:21:52] VERSION_ID="7"
[2025-11-30 01:21:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 01:21:52] ANSI_COLOR="0;31"
[2025-11-30 01:21:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 01:21:52] HOME_URL="https://www.centos.org/"
[2025-11-30 01:21:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 01:21:52] 
[2025-11-30 01:21:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 01:21:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 01:21:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 01:21:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 01:21:52] 
[2025-11-30 01:21:52] 2025-11-30 00:21:21,465 | INFO     | ***************************************
[2025-11-30 01:21:52] 2025-11-30 00:21:21,969 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-30 01:21:52] 2025-11-30 00:21:21,981 | INFO     | sufficient remaining disk space (488803139584 B)
[2025-11-30 01:21:52] 2025-11-30 00:21:21,981 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 01:21:52] 2025-11-30 00:21:21,981 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 01:21:52] 2025-11-30 00:21:21,981 | INFO     | update_server=False
[2025-11-30 01:21:52] 2025-11-30 00:21:21,981 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 01:21:52] 2025-11-30 00:21:21,981 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 01:21:52] 2025-11-30 00:21:21,981 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 01:21:52] 2025-11-30 00:21:21,981 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 01:21:52] 2025-11-30 00:21:22,219 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 01:21:52] 2025-11-30 00:21:22,219 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 01:21:52] 2025-11-30 00:21:22,220 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 01:21:52] 2025-11-30 00:21:22,220 | INFO     | will abort loop
[2025-11-30 01:21:52] 2025-11-30 00:21:22,492 | INFO     | all data control threads have been joined
[2025-11-30 01:21:52] 2025-11-30 00:21:22,795 | INFO     | all payload control threads have been joined
[2025-11-30 01:21:52] 2025-11-30 00:21:22,984 | INFO     | [job] queue monitor thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:22,987 | INFO     | [job] retrieve thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:23,117 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:23,225 | INFO     | [job] job monitor thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:23,498 | INFO     | [data] control thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:23,553 | INFO     | all job control threads have been joined
[2025-11-30 01:21:52] 2025-11-30 00:21:23,645 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:23,801 | INFO     | [payload] control thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:23,948 | INFO     | [payload] validate_post thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:23,987 | INFO     | [data] copytool_out thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:24,023 | INFO     | [data] copytool_in thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:24,045 | INFO     | [payload] failed_post thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:24,144 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:24,312 | INFO     | [job] validate thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:24,313 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:24,559 | INFO     | [job] control thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:25,988 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 01:21:52] 2025-11-30 00:21:41,371 | INFO     | [monitor] cgroup control has ended
[2025-11-30 01:21:52] 2025-11-30 00:21:42,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668880877376)>', '<ExcThread(monitor, started 139668158928640)>']
[2025-11-30 01:21:52] 2025-11-30 00:21:47,624 | INFO     | all workflow threads have been joined
[2025-11-30 01:21:52] 2025-11-30 00:21:47,625 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 01:21:52] 2025-11-30 00:21:47,625 | INFO     | traces error code: 0
[2025-11-30 01:21:52] 2025-11-30 00:21:47,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 01:21:52] 2025-11-30 00:21:52,249 | INFO     | PID=3448692 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 01:21:52] 2025-11-30 00:21:52,249 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 01:21:52] 2025-11-30 00:21:52,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 01:21:52] 2025-11-30 00:21:52,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 01:21:52] 2025-11-30 00:21:52,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 01:21:52] 2025-11-30 00:21:52,249 | CRITICAL | thread 'MainThread' is not alive
[2025-11-30 01:21:52] 2025-11-30 00:21:52,249 | INFO     | [monitor] control thread has ended
[2025-11-30 01:21:52] 2025-11-30 00:21:52,290 [wrapper] ==== pilot stdout END ====
[2025-11-30 01:21:52] 2025-11-30 00:21:52,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 01:21:52] 2025-11-30 00:21:52,295 [wrapper] pilotpid: 3448692
[2025-11-30 01:21:52] 2025-11-30 00:21:52,297 [wrapper] Pilot exit status: 0
[2025-11-30 01:21:52] 2025-11-30 00:21:52,303 [wrapper] pandaids: 6897139699
[2025-11-30 01:21:52] 2025-11-30 00:21:52,315 [wrapper] cleanup supervisor_pilot 3526401 3448693
[2025-11-30 01:21:52] 2025-11-30 00:21:52,317 [wrapper] Test setup, not cleaning
[2025-11-30 01:21:52] 2025-11-30 00:21:52,319 [wrapper] apfmon messages muted
[2025-11-30 01:21:52] 2025-11-30 00:21:52,321 [wrapper] ==== wrapper stdout END ====
[2025-11-30 01:21:52] 2025-11-30 00:21:52,323 [wrapper] ==== wrapper stderr END ====
[2025-11-30 01:21:52]  *** Error codes and diagnostics ***
[2025-11-30 01:21:52]     "exeErrorCode": 0,
[2025-11-30 01:21:52]     "exeErrorDiag": "",
[2025-11-30 01:21:52]     "pilotErrorCode": 0,
[2025-11-30 01:21:52]     "pilotErrorDiag": "",
[2025-11-30 01:21:52]  *** Listing of results directory ***
[2025-11-30 01:21:52] total 1319680
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc    576529 Nov 25 17:48 pilot3.tar.gz
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc      5112 Nov 25 17:55 queuedata.json
[2025-11-30 01:21:52] -rwx------ 1 boinc boinc     36292 Nov 25 17:56 runpilot2-wrapper.sh
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc       100 Nov 29 13:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 01:21:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 13:08 run_atlas
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc       105 Nov 29 13:08 job.xml
[2025-11-30 01:21:52] -rw-r--r-- 2 boinc boinc 411657858 Nov 29 13:08 EVNT.47483658._002196.pool.root.1
[2025-11-30 01:21:52] -rw-r--r-- 2 boinc boinc    590110 Nov 29 13:08 input.tar.gz
[2025-11-30 01:21:52] -rw-r--r-- 2 boinc boinc     15847 Nov 29 13:08 start_atlas.sh
[2025-11-30 01:21:52] drwxrwx--x 2 boinc boinc      4096 Nov 29 13:08 shared
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc         0 Nov 29 13:08 boinc_setup_complete
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc      6208 Nov 29 13:08 init_data.xml
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc         0 Nov 29 13:08 boinc_lockfile
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc      2786 Nov 29 13:08 pandaJob.out
[2025-11-30 01:21:52] -rw------- 1 boinc boinc    991834 Nov 29 13:08 agis_schedconf.cvmfs.json
[2025-11-30 01:21:52] drwx------ 5 boinc boinc      4096 Nov 29 13:08 pilot3
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc       532 Nov 30 01:17 boinc_task_state.xml
[2025-11-30 01:21:52] -rw------- 1 boinc boinc 921019348 Nov 30 01:20 HITS.47556161._001797.pool.root.1
[2025-11-30 01:21:52] -rw------- 1 boinc boinc        95 Nov 30 01:21 pilot_heartbeat.json
[2025-11-30 01:21:52] -rw------- 1 boinc boinc      1022 Nov 30 01:21 memory_monitor_summary.json
[2025-11-30 01:21:52] -rw------- 1 boinc boinc   1516240 Nov 30 01:21 agis_ddmendpoints.agis.ALL.json
[2025-11-30 01:21:52] -rw------- 1 boinc boinc   1215986 Nov 30 01:21 log.47556161._001797.job.log.tgz.1
[2025-11-30 01:21:52] -rw------- 1 boinc boinc      8563 Nov 30 01:21 heartbeat.json
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc      8192 Nov 30 01:21 boinc_mmap_file
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc        28 Nov 30 01:21 wrapper_checkpoint.txt
[2025-11-30 01:21:52] -rw------- 1 boinc boinc       817 Nov 30 01:21 pilotlog.txt
[2025-11-30 01:21:52] -rw------- 1 boinc boinc   6168859 Nov 30 01:21 log.47556161._001797.job.log.1
[2025-11-30 01:21:52] -rw------- 1 boinc boinc       353 Nov 30 01:21 output.list
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc       620 Nov 30 01:21 runtime_log
[2025-11-30 01:21:52] -rw------- 1 boinc boinc   7403520 Nov 30 01:21 result.tar.gz
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc      8903 Nov 30 01:21 runtime_log.err
[2025-11-30 01:21:52] -rw------- 1 boinc boinc       666 Nov 30 01:21 5XsNDmbWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDYJKDmtONvbn.diag
[2025-11-30 01:21:52] -rw-r--r-- 1 boinc boinc     10743 Nov 30 01:21 stderr.txt
[2025-11-30 01:21:52] HITS file was successfully produced:
[2025-11-30 01:21:52] -rw------- 1 boinc boinc 921019348 Nov 30 01:20 shared/HITS.pool.root.1
[2025-11-30 01:21:52]  *** Contents of shared directory: ***
[2025-11-30 01:21:52] total 1309284
[2025-11-30 01:21:52] -rw-r--r-- 2 boinc boinc 411657858 Nov 29 13:08 ATLAS.root_0
[2025-11-30 01:21:52] -rw-r--r-- 2 boinc boinc    590110 Nov 29 13:08 input.tar.gz
[2025-11-30 01:21:52] -rw-r--r-- 2 boinc boinc     15847 Nov 29 13:08 start_atlas.sh
[2025-11-30 01:21:52] -rw------- 1 boinc boinc 921019348 Nov 30 01:20 HITS.pool.root.1
[2025-11-30 01:21:52] -rw------- 1 boinc boinc   7403520 Nov 30 01:21 result.tar.gz
01:21:53 (3444976): run_atlas exited; CPU time 87123.676813
01:21:53 (3444976): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN