Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:05:49 (3919350): wrapper (7.7.26015): starting
08:05:49 (3919350): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 08:05:49] Arguments: --nthreads 12
[2025-11-26 08:05:49] Threads: 12
[2025-11-26 08:05:49] Checking for CVMFS
[2025-11-26 08:05:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:05:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:05:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:05:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:05:51] 2.11.5.0 3367711 28504 166376 153326 1 604 31555460 45568001 39634 130560 0 266081949 99.815 140979609 24980 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 08:05:51] CVMFS is ok
[2025-11-26 08:05:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:05:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:05:51] Further information can be found at the LHC@home message board.
[2025-11-26 08:05:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:05:51] Checking for apptainer binary...
[2025-11-26 08:05:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:05:51] Running /usr/bin/apptainer --version
[2025-11-26 08:05:51] apptainer version 1.4.1-1.el9
[2025-11-26 08:05:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:05:52] wns0082.triumf.lcg
[2025-11-26 08:05:52] apptainer works
[2025-11-26 08:05:52] Set ATHENA_PROC_NUMBER=12
[2025-11-26 08:05:52] Set ATHENA_CORE_NUMBER=12
[2025-11-26 08:05:52] Starting ATLAS job with PandaID=6898000264
[2025-11-26 08:05:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:12:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:12:32] 2025-11-26 16:11:33,433 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 08:12:32] 2025-11-26 16:11:33,433 | WARNING  | wrong length of table data, x=[1764173260.0, 1764173321.0], y=[20997.0, 368603.0] (must be same and length>=4)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,435 | INFO     | could have reported an average CPU frequency of 2767 MHz (4 samples)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | ..............................
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . Timing measurements:
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . get job = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . initial setup = 3 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . payload setup = 18 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . stage-in = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . payload execution = 109 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,438 | INFO     | . stage-out = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | . log creation = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | ..............................
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 08:12:32] 2025-11-26 16:11:33,440 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898000264/pilotlog.txt
[2025-11-26 08:12:32] 2025-11-26 16:11:33,459 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 08:12:32] - Log from pilotlog.txt -
[2025-11-26 08:12:32] 2025-11-26 16:11:33,426 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898000264/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,427 | INFO     | extracted standard info from prmon json
[2025-11-26 08:12:32] 2025-11-26 16:11:33,427 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:12:32] 2025-11-26 16:11:33,428 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:12:32] 2025-11-26 16:11:33,433 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 08:12:32] 2025-11-26 16:11:33,433 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 08:12:32] 2025-11-26 16:11:33,433 | WARNING  | wrong length of table data, x=[1764173260.0, 1764173321.0], y=[20997.0, 368603.0] (must be same and length>=4)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,435 | INFO     | could have reported an average CPU frequency of 2767 MHz (4 samples)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | ..............................
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . Timing measurements:
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . get job = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . initial setup = 3 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . payload setup = 18 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . stage-in = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . payload execution = 109 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,438 | INFO     | . stage-out = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | . log creation = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | ..............................
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 08:12:32] 2025-11-26 16:11:33,440 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898000264/pilotlog.txt
[2025-11-26 08:12:32] 2025-11-26 16:11:33,459 | WARNING  | 
[2025-11-26 08:12:32] [begin log extracts]
[2025-11-26 08:12:32] - Log from pilotlog.txt -
[2025-11-26 08:12:32] 2025-11-26 16:11:33,426 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898000264/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,427 | INFO     | extracted standard info from prmon json
[2025-11-26 08:12:32] 2025-11-26 16:11:33,427 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:12:32] 2025-11-26 16:11:33,428 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:12:32] 2025-11-26 16:11:33,433 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 08:12:32] 2025-11-26 16:11:33,433 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 08:12:32] 2025-11-26 16:11:33,433 | WARNING  | wrong length of table data, x=[1764173260.0, 1764173321.0], y=[20997.0, 368603.0] (must be same and length>=4)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,435 | INFO     | could have reported an average CPU frequency of 2767 MHz (4 samples)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | ..............................
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . Timing measurements:
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . get job = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . initial setup = 3 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . payload setup = 18 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . stage-in = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,436 | INFO     | . payload execution = 109 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,438 | INFO     | . stage-out = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | . log creation = 0 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | ..............................
[2025-11-26 08:12:32] 2025-11-26 16:11:33,439 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 08:12:32] 2025-11-26 16:11:33,440 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898000264/pilotlog.txt
[2025-11-26 08:12:32] [end log extracts]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,459 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,460 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 08:12:32] 2025-11-26 16:11:33,641 | INFO     | 
[2025-11-26 08:12:32] 2025-11-26 16:11:33,644 | INFO     | job summary report
[2025-11-26 08:12:32] 2025-11-26 16:11:33,644 | INFO     | --------------------------------------------------
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | PanDA job id: 6898000264
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | task id: 47556161
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 08:09:09,194 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | pilot state: failed 
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | transexitcode: 65
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | exeerrorcode: 65
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | exitcode: 65
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | cpuconsumptiontime: 41 s
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | nevents: 0
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | neventsw: 0
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | pid: 3932064
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | pgrp: 3932064
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | corecount: 12
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | event service: False
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | sizes: {0: 2283436, 1: 2284289, 2: 2284289, 12: 2284317, 15: 2284607, 23: 2284635, 132: 2310216, 133: 2314506, 135: 2314534, 269: 2314700}
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | --------------------------------------------------
[2025-11-26 08:12:32] 2025-11-26 16:11:33,645 | INFO     | 
[2025-11-26 08:12:32] 2025-11-26 16:11:33,646 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 08:12:32] 2025-11-26 16:11:33,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,681 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,681 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,682 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:12:32] 2025-11-26 16:11:33,683 | INFO     | job 6898000264 has completed (purged errors)
[2025-11-26 08:12:32] 2025-11-26 16:11:33,683 | INFO     | overall cleanup function is called
[2025-11-26 08:12:32] 2025-11-26 16:11:34,691 | INFO     | --- collectZombieJob: --- 10, [3932064]
[2025-11-26 08:12:32] 2025-11-26 16:11:34,691 | INFO     | zombie collector waiting for pid 3932064
[2025-11-26 08:12:32] 2025-11-26 16:11:34,691 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:12:32] 2025-11-26 16:11:34,691 | INFO     | collected zombie processes
[2025-11-26 08:12:32] 2025-11-26 16:11:34,691 | INFO     | will attempt to kill all subprocesses of pid=3932064
[2025-11-26 08:12:32] 2025-11-26 16:11:35,087 | INFO     | process IDs to be killed: [3932064] (in reverse order)
[2025-11-26 08:12:32] 2025-11-26 16:11:35,243 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:12:32] 2025-11-26 16:11:35,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:12:32] 2025-11-26 16:11:35,258 | INFO     | did not find any defunct processes belonging to 3932064
[2025-11-26 08:12:32] 2025-11-26 16:11:35,268 | INFO     | did not find any defunct processes belonging to 3932064
[2025-11-26 08:12:32] 2025-11-26 16:11:35,268 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:12:32] 2025-11-26 16:11:35,269 | INFO     | ready for new job
[2025-11-26 08:12:32] 2025-11-26 16:11:35,269 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:12:32] 2025-11-26 16:11:35,270 | INFO     | ***************************************
[2025-11-26 08:12:32] 2025-11-26 16:11:35,270 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:12:32] 2025-11-26 16:11:35,270 | INFO     | ***************************************
[2025-11-26 08:12:32] 2025-11-26 16:11:35,270 | INFO     | 
[2025-11-26 08:12:32] 2025-11-26 16:11:35,272 | INFO     | architecture information:
[2025-11-26 08:12:32] 2025-11-26 16:11:35,272 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:12:32] 2025-11-26 16:11:35,286 | INFO     | cat /etc/os-release:
[2025-11-26 08:12:32] NAME="CentOS Linux"
[2025-11-26 08:12:32] VERSION="7 (Core)"
[2025-11-26 08:12:32] ID="centos"
[2025-11-26 08:12:32] ID_LIKE="rhel fedora"
[2025-11-26 08:12:32] VERSION_ID="7"
[2025-11-26 08:12:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:12:32] ANSI_COLOR="0;31"
[2025-11-26 08:12:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:12:32] HOME_URL="https://www.centos.org/"
[2025-11-26 08:12:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:12:32] 
[2025-11-26 08:12:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:12:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:12:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:12:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:12:32] 
[2025-11-26 08:12:32] 2025-11-26 16:11:35,287 | INFO     | ***************************************
[2025-11-26 08:12:32] 2025-11-26 16:11:35,790 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 08:12:32] 2025-11-26 16:11:35,851 | INFO     | sufficient remaining disk space (1651425411072 B)
[2025-11-26 08:12:32] 2025-11-26 16:11:35,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:12:32] 2025-11-26 16:11:35,852 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:12:32] 2025-11-26 16:11:35,856 | INFO     | update_server=False
[2025-11-26 08:12:32] 2025-11-26 16:11:35,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:12:32] 2025-11-26 16:11:35,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:12:32] 2025-11-26 16:11:35,862 | INFO     | aborting loop
[2025-11-26 08:12:32] 2025-11-26 16:11:36,159 | INFO     | all payload control threads have been joined
[2025-11-26 08:12:32] 2025-11-26 16:11:36,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:12:32] 2025-11-26 16:11:36,739 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:12:32] 2025-11-26 16:11:36,864 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:36,871 | INFO     | all data control threads have been joined
[2025-11-26 08:12:32] 2025-11-26 16:11:36,905 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:36,929 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:36,990 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:37,103 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:37,177 | INFO     | [payload] control thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:37,243 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:37,486 | INFO     | all job control threads have been joined
[2025-11-26 08:12:32] 2025-11-26 16:11:37,877 | INFO     | [data] control thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:38,020 | INFO     | [job] validate thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:38,048 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:38,084 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:38,215 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:38,492 | INFO     | [job] control thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:38,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:12:32] 2025-11-26 16:11:38,746 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:39,657 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:11:40,641 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:12:32] 2025-11-26 16:12:05,526 | INFO     | PID=3923466 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:12:32] 2025-11-26 16:12:05,527 | INFO     | .. there are 42 such processes running
[2025-11-26 08:12:32] 2025-11-26 16:12:05,527 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:12:32] 2025-11-26 16:12:05,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:12:32] 2025-11-26 16:12:05,527 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:12:32] 2025-11-26 16:12:26,025 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:12:32] 2025-11-26 16:12:26,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026581047104)>', '<ExcThread(monitor, started 140026176325376)>']
[2025-11-26 08:12:32] 2025-11-26 16:12:27,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:12:32] 2025-11-26 16:12:27,686 | INFO     | [monitor] control thread has ended
[2025-11-26 08:12:32] 2025-11-26 16:12:31,760 | INFO     | all workflow threads have been joined
[2025-11-26 08:12:32] 2025-11-26 16:12:31,760 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:12:32] 2025-11-26 16:12:31,760 | INFO     | traces error code: 0
[2025-11-26 08:12:32] 2025-11-26 16:12:31,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:12:32] 2025-11-26 16:12:32,006 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:12:32] 2025-11-26 16:12:32,033 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:12:32] 2025-11-26 16:12:32,048 [wrapper] pilotpid: 3923466
[2025-11-26 08:12:32] 2025-11-26 16:12:32,069 [wrapper] Pilot exit status: 0
[2025-11-26 08:12:32] 2025-11-26 16:12:32,113 [wrapper] pandaids: 6898000264
[2025-11-26 08:12:32] 2025-11-26 16:12:32,278 [wrapper] cleanup supervisor_pilot 3923472 3923467
[2025-11-26 08:12:32] 2025-11-26 16:12:32,282 [wrapper] Test setup, not cleaning
[2025-11-26 08:12:32] 2025-11-26 16:12:32,284 [wrapper] apfmon messages muted
[2025-11-26 08:12:32] 2025-11-26 16:12:32,287 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:12:32] 2025-11-26 16:12:32,289 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:12:32]  *** Error codes and diagnostics ***
[2025-11-26 08:12:32]     "exeErrorCode": 65,
[2025-11-26 08:12:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 08:12:32]     "pilotErrorCode": 1305,
[2025-11-26 08:12:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 08:12:32]  *** Listing of results directory ***
[2025-11-26 08:12:32] total 405144
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc    576529 Nov 25 18:38 pilot3.tar.gz
[2025-11-26 08:12:32] -rwx------. 1 boinc boinc     36292 Nov 25 18:46 runpilot2-wrapper.sh
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:46 queuedata.json
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc       100 Nov 26 08:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:12:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 08:05 run_atlas
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc       105 Nov 26 08:05 job.xml
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc      6595 Nov 26 08:05 init_data.xml
[2025-11-26 08:12:32] -rw-r--r--. 2 boinc boinc 410641314 Nov 26 08:05 EVNT.47483658._002390.pool.root.1
[2025-11-26 08:12:32] -rw-r--r--. 2 boinc boinc     15847 Nov 26 08:05 start_atlas.sh
[2025-11-26 08:12:32] drwxrwx--x. 2 boinc boinc      4096 Nov 26 08:05 shared
[2025-11-26 08:12:32] -rw-r--r--. 2 boinc boinc    590103 Nov 26 08:05 input.tar.gz
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc         0 Nov 26 08:05 boinc_lockfile
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc      2785 Nov 26 08:05 pandaJob.out
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc    991855 Nov 26 08:06 agis_schedconf.cvmfs.json
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc   1516240 Nov 26 08:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:12:32] drwx------. 5 boinc boinc      4096 Nov 26 08:06 pilot3
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc       524 Nov 26 08:08 boinc_task_state.xml
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc       995 Nov 26 08:09 memory_monitor_summary.json
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc     49939 Nov 26 08:09 log.47556161._003725.job.log.tgz.1
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc        95 Nov 26 08:11 pilot_heartbeat.json
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc     10341 Nov 26 08:11 heartbeat.json
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc      8192 Nov 26 08:12 boinc_mmap_file
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc        23 Nov 26 08:12 wrapper_checkpoint.txt
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc      4823 Nov 26 08:12 pilotlog.txt
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc    105733 Nov 26 08:12 log.47556161._003725.job.log.1
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc       186 Nov 26 08:12 output.list
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc       620 Nov 26 08:12 runtime_log
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc    174080 Nov 26 08:12 result.tar.gz
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc      8636 Nov 26 08:12 runtime_log.err
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc       646 Nov 26 08:12 MsbLDmoiKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLoJKDmsYszxn.diag
[2025-11-26 08:12:32] -rw-r--r--. 1 boinc boinc     22516 Nov 26 08:12 stderr.txt
[2025-11-26 08:12:32] No HITS result produced
[2025-11-26 08:12:32]  *** Contents of shared directory: ***
[2025-11-26 08:12:32] total 401792
[2025-11-26 08:12:32] -rw-r--r--. 2 boinc boinc 410641314 Nov 26 08:05 ATLAS.root_0
[2025-11-26 08:12:32] -rw-r--r--. 2 boinc boinc     15847 Nov 26 08:05 start_atlas.sh
[2025-11-26 08:12:32] -rw-r--r--. 2 boinc boinc    590103 Nov 26 08:05 input.tar.gz
[2025-11-26 08:12:32] -rw-------. 1 boinc boinc    174080 Nov 26 08:12 result.tar.gz
08:12:34 (3919350): run_atlas exited; CPU time 45.802328
08:12:34 (3919350): called boinc_finish(0)

</stderr_txt>
]]>

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