Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:48:12 (180456): wrapper (7.7.26015): starting
16:48:12 (180456): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 16:48:12] Arguments: --nthreads 3
[2025-11-26 16:48:12] Threads: 3
[2025-11-26 16:48:12] Checking for CVMFS
[2025-11-26 16:48:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:48:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:48:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:49:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:49:15] 2.9.2.0 2184780 977 73576 153326 2 88 35693669 36864000 0 130560 0 6522683 99.999 33064 1368 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 16:49:15] CVMFS is ok
[2025-11-26 16:49:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:49:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:49:15] Further information can be found at the LHC@home message board.
[2025-11-26 16:49:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:49:15] Checking for apptainer binary...
[2025-11-26 16:49:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:49:15] Running /usr/bin/apptainer --version
[2025-11-26 16:49:15] apptainer version 1.4.1-1.1
[2025-11-26 16:49:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:49:15] thA335
[2025-11-26 16:49:15] apptainer works
[2025-11-26 16:49:15] Set ATHENA_PROC_NUMBER=3
[2025-11-26 16:49:15] Set ATHENA_CORE_NUMBER=3
[2025-11-26 16:49:15] Starting ATLAS job with PandaID=6893860377
[2025-11-26 16:49:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:53:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:53:32] 2025-11-26 15:52:41,057 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:53:32] 2025-11-26 15:52:41,057 | INFO     | update_server=False
[2025-11-26 16:53:32] 2025-11-26 15:52:41,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:53:32] 2025-11-26 15:52:41,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:53:32] 2025-11-26 15:52:41,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:53:32] 2025-11-26 15:52:41,171 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 16:53:32] 2025-11-26 15:52:41,172 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 16:53:32] 2025-11-26 15:52:41,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:53:32] 2025-11-26 15:52:41,172 | INFO     | will abort loop
[2025-11-26 16:53:32] 2025-11-26 15:52:41,406 | INFO     | all data control threads have been joined
[2025-11-26 16:53:32] 2025-11-26 15:52:41,736 | INFO     | all payload control threads have been joined
[2025-11-26 16:53:32] 2025-11-26 15:52:42,063 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,064 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,178 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,295 | INFO     | all job control threads have been joined
[2025-11-26 16:53:32] 2025-11-26 15:52:42,356 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,412 | INFO     | [data] control thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,451 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,735 | INFO     | [job] validate thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,741 | INFO     | [payload] control thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,804 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,878 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:42,912 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:43,062 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:43,301 | INFO     | [job] control thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:43,305 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:52:43,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:53:32] 2025-11-26 15:52:47,422 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:53:32] 2025-11-26 15:53:10,866 | INFO     | PID=184204 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 16:53:32] 2025-11-26 15:53:10,866 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:53:32] 2025-11-26 15:53:10,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:53:32] 2025-11-26 15:53:10,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:53:32] 2025-11-26 15:53:26,104 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:53:32] 2025-11-26 15:53:27,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851739739968)>', '<ExcThread(monitor, started 139851097691904)>']
[2025-11-26 16:53:32] 2025-11-26 15:53:27,957 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:53:32] 2025-11-26 15:53:27,957 | INFO     | [monitor] control thread has ended
[2025-11-26 16:53:32] 2025-11-26 15:53:32,285 | INFO     | all workflow threads have been joined
[2025-11-26 16:53:32] 2025-11-26 15:53:32,285 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:53:32] 2025-11-26 15:53:32,286 | INFO     | traces error code: 0
[2025-11-26 16:53:32] 2025-11-26 15:53:32,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:53:32] 2025-11-26 15:53:32,330 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:53:32] 2025-11-26 15:53:32,333 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:53:32] 2025-11-26 15:53:32,336 [wrapper] pilotpid: 184204
[2025-11-26 16:53:32] 2025-11-26 15:53:32,339 [wrapper] Pilot exit status: 0
[2025-11-26 16:53:32] 2025-11-26 15:53:32,347 [wrapper] pandaids: 6893860377
[2025-11-26 16:53:32] 2025-11-26 15:53:32,364 [wrapper] cleanup supervisor_pilot  184210 184205
[2025-11-26 16:53:32] 2025-11-26 15:53:32,367 [wrapper] Test setup, not cleaning
[2025-11-26 16:53:32] 2025-11-26 15:53:32,370 [wrapper] apfmon messages muted
[2025-11-26 16:53:32] 2025-11-26 15:53:32,372 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:53:32] 2025-11-26 15:53:32,375 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:53:32]  *** Error codes and diagnostics ***
[2025-11-26 16:53:32]     "exeErrorCode": 65,
[2025-11-26 16:53:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 16:53:32]     "pilotErrorCode": 1305,
[2025-11-26 16:53:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 16:53:32]  *** Listing of results directory ***
[2025-11-26 16:53:32] total 405652
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:45 queuedata.json
[2025-11-26 16:53:32] -rwx------ 1 boinc boinc     36292 Nov 20 14:46 runpilot2-wrapper.sh
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc       100 Nov 26 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:53:32] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 16:48 run_atlas
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc       105 Nov 26 16:48 job.xml
[2025-11-26 16:53:32] -rw-r--r-- 2 boinc boinc 411188520 Nov 26 16:48 EVNT.47493127._000558.pool.root.1
[2025-11-26 16:53:32] drwxrwx--x 2 boinc boinc      4096 Nov 26 16:48 shared
[2025-11-26 16:53:32] -rw-r--r-- 2 boinc boinc    590102 Nov 26 16:48 input.tar.gz
[2025-11-26 16:53:32] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:48 start_atlas.sh
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:48 boinc_setup_complete
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc      6196 Nov 26 16:48 init_data.xml
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc         0 Nov 26 16:48 boinc_lockfile
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc      2782 Nov 26 16:49 pandaJob.out
[2025-11-26 16:53:32] -rw------- 1 boinc boinc    991855 Nov 26 16:49 agis_schedconf.cvmfs.json
[2025-11-26 16:53:32] -rw------- 1 boinc boinc   1516240 Nov 26 16:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:53:32] drwx------ 5 boinc boinc      4096 Nov 26 16:49 pilot3
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc       523 Nov 26 16:50 boinc_task_state.xml
[2025-11-26 16:53:32] -rw------- 1 boinc boinc       958 Nov 26 16:50 memory_monitor_summary.json
[2025-11-26 16:53:32] -rw------- 1 boinc boinc     56088 Nov 26 16:50 log.47523449._005571.job.log.tgz.1
[2025-11-26 16:53:32] -rw------- 1 boinc boinc        95 Nov 26 16:52 pilot_heartbeat.json
[2025-11-26 16:53:32] -rw------- 1 boinc boinc      8401 Nov 26 16:52 heartbeat.json
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc        22 Nov 26 16:53 wrapper_checkpoint.txt
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:53 boinc_mmap_file
[2025-11-26 16:53:32] -rw------- 1 boinc boinc      4937 Nov 26 16:53 pilotlog.txt
[2025-11-26 16:53:32] -rw------- 1 boinc boinc     93585 Nov 26 16:53 log.47523449._005571.job.log.1
[2025-11-26 16:53:32] -rw------- 1 boinc boinc       186 Nov 26 16:53 output.list
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:53 runtime_log
[2025-11-26 16:53:32] -rw------- 1 boinc boinc    174080 Nov 26 16:53 result.tar.gz
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc      8744 Nov 26 16:53 runtime_log.err
[2025-11-26 16:53:32] -rw------- 1 boinc boinc       649 Nov 26 16:53 IwPKDmDAKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbzHKDmC8Sr3n.diag
[2025-11-26 16:53:32] -rw-r--r-- 1 boinc boinc      8118 Nov 26 16:53 stderr.txt
[2025-11-26 16:53:32] No HITS result produced
[2025-11-26 16:53:32]  *** Contents of shared directory: ***
[2025-11-26 16:53:32] total 402324
[2025-11-26 16:53:32] -rw-r--r-- 2 boinc boinc 411188520 Nov 26 16:48 ATLAS.root_0
[2025-11-26 16:53:32] -rw-r--r-- 2 boinc boinc    590102 Nov 26 16:48 input.tar.gz
[2025-11-26 16:53:32] -rw-r--r-- 2 boinc boinc     15847 Nov 26 16:48 start_atlas.sh
[2025-11-26 16:53:32] -rw------- 1 boinc boinc    174080 Nov 26 16:53 result.tar.gz
16:53:34 (180456): run_atlas exited; CPU time 31.564636
16:53:34 (180456): called boinc_finish(0)

</stderr_txt>
]]>

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