Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:29:35 (47187): wrapper (7.7.26015): starting
07:29:35 (47187): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 07:29:35] Arguments: --nthreads 12
[2025-11-26 07:29:35] Threads: 12
[2025-11-26 07:29:35] Checking for CVMFS
[2025-11-26 07:29:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:29:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:29:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:29:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:29:36] 2.11.5.0 831512 28453 323864 153326 0 199 38271327 45568000 25510 130560 0 145953963 99.748 108749221 23201 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 07:29:36] CVMFS is ok
[2025-11-26 07:29:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:29:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:29:36] Further information can be found at the LHC@home message board.
[2025-11-26 07:29:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:29:36] Checking for apptainer binary...
[2025-11-26 07:29:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:29:36] Running /usr/bin/apptainer --version
[2025-11-26 07:29:37] apptainer version 1.4.1-1.el9
[2025-11-26 07:29:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:29:38] wns0042.triumf.lcg
[2025-11-26 07:29:38] apptainer works
[2025-11-26 07:29:38] Set ATHENA_PROC_NUMBER=12
[2025-11-26 07:29:38] Set ATHENA_CORE_NUMBER=12
[2025-11-26 07:29:38] Starting ATLAS job with PandaID=6897999089
[2025-11-26 07:29:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:39:22]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:39:22] 2025-11-26 15:38:34,137 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 07:39:22] 2025-11-26 15:38:34,142 | WARNING  | wrong length of table data, x=[1764171108.0, 1764171169.0, 1764171230.0, 1764171291.0, 1764171352.0], y=[2534.0, 339755.0, 611227.0, 914524.0, 668281.0] (must be s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,142 | INFO     | could have reported an average CPU frequency of 1384 MHz (4 samples)
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | ..............................
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . Timing measurements:
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . get job = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . initial setup = 3 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . payload setup = 30 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . stage-in = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . payload execution = 290 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . stage-out = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . log creation = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | ..............................
[2025-11-26 07:39:22] 2025-11-26 15:38:34,144 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 07:39:22] 2025-11-26 15:38:34,144 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999089/pilotlog.txt
[2025-11-26 07:39:22] 2025-11-26 15:38:34,279 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 07:39:22] - Log from pilotlog.txt -
[2025-11-26 07:39:22] 2025-11-26 15:38:34,135 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897999089/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:39:22] 2025-11-26 15:38:34,136 | INFO     | extracted standard info from prmon json
[2025-11-26 07:39:22] 2025-11-26 15:38:34,136 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:39:22] 2025-11-26 15:38:34,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:39:22] 2025-11-26 15:38:34,137 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 07:39:22] 2025-11-26 15:38:34,137 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 07:39:22] 2025-11-26 15:38:34,142 | WARNING  | wrong length of table data, x=[1764171108.0, 1764171169.0, 1764171230.0, 1764171291.0, 1764171352.0], y=[2534.0, 339755.0, 611227.0, 914524.0, 668281.0] (must be s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,142 | INFO     | could have reported an average CPU frequency of 1384 MHz (4 samples)
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | ..............................
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . Timing measurements:
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . get job = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . initial setup = 3 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . payload setup = 30 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . stage-in = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . payload execution = 290 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . stage-out = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . log creation = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | ..............................
[2025-11-26 07:39:22] 2025-11-26 15:38:34,144 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 07:39:22] 2025-11-26 15:38:34,144 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999089/pilotlog.txt
[2025-11-26 07:39:22] 2025-11-26 15:38:34,280 | WARNING  | 
[2025-11-26 07:39:22] [begin log extracts]
[2025-11-26 07:39:22] - Log from pilotlog.txt -
[2025-11-26 07:39:22] 2025-11-26 15:38:34,135 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897999089/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:39:22] 2025-11-26 15:38:34,136 | INFO     | extracted standard info from prmon json
[2025-11-26 07:39:22] 2025-11-26 15:38:34,136 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:39:22] 2025-11-26 15:38:34,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:39:22] 2025-11-26 15:38:34,137 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 07:39:22] 2025-11-26 15:38:34,137 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 07:39:22] 2025-11-26 15:38:34,142 | WARNING  | wrong length of table data, x=[1764171108.0, 1764171169.0, 1764171230.0, 1764171291.0, 1764171352.0], y=[2534.0, 339755.0, 611227.0, 914524.0, 668281.0] (must be s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,142 | INFO     | could have reported an average CPU frequency of 1384 MHz (4 samples)
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | ..............................
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . Timing measurements:
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . get job = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . initial setup = 3 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . payload setup = 30 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . stage-in = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . payload execution = 290 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . stage-out = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | . log creation = 0 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,143 | INFO     | ..............................
[2025-11-26 07:39:22] 2025-11-26 15:38:34,144 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 07:39:22] 2025-11-26 15:38:34,144 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999089/pilotlog.txt
[2025-11-26 07:39:22] [end log extracts]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,280 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 07:39:22] 2025-11-26 15:38:34,281 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 07:39:22] 2025-11-26 15:38:34,649 | INFO     | 
[2025-11-26 07:39:22] 2025-11-26 15:38:34,649 | INFO     | job summary report
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | --------------------------------------------------
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | PanDA job id: 6897999089
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | task id: 47556173
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 07:36:10,154 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | pilot state: failed 
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | transexitcode: 65
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | exeerrorcode: 65
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 07:39:22] 2025-11-26 15:38:34,650 | INFO     | exitcode: 65
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | cpuconsumptiontime: 78 s
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | nevents: 0
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | neventsw: 0
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | pid: 60024
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | pgrp: 60024
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | corecount: 12
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | event service: False
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | sizes: {0: 2284261, 11: 2284261, 18: 2284551, 22: 2284579, 324: 2310166, 325: 2310170, 326: 2314700, 462: 2314838}
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | --------------------------------------------------
[2025-11-26 07:39:22] 2025-11-26 15:38:34,651 | INFO     | 
[2025-11-26 07:39:22] 2025-11-26 15:38:34,652 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 07:39:22] 2025-11-26 15:38:34,763 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,764 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,764 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,764 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:39:22] 2025-11-26 15:38:34,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,766 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:39:22] 2025-11-26 15:38:34,766 | INFO     | job 6897999089 has completed (purged errors)
[2025-11-26 07:39:22] 2025-11-26 15:38:34,766 | INFO     | overall cleanup function is called
[2025-11-26 07:39:22] 2025-11-26 15:38:35,792 | INFO     | --- collectZombieJob: --- 10, [60024]
[2025-11-26 07:39:22] 2025-11-26 15:38:35,792 | INFO     | zombie collector waiting for pid 60024
[2025-11-26 07:39:22] 2025-11-26 15:38:35,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:39:22] 2025-11-26 15:38:35,793 | INFO     | collected zombie processes
[2025-11-26 07:39:22] 2025-11-26 15:38:35,793 | INFO     | will attempt to kill all subprocesses of pid=60024
[2025-11-26 07:39:22] 2025-11-26 15:38:36,313 | INFO     | process IDs to be killed: [60024] (in reverse order)
[2025-11-26 07:39:22] 2025-11-26 15:38:36,428 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:39:22] 2025-11-26 15:38:36,428 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:39:22] 2025-11-26 15:38:36,453 | INFO     | did not find any defunct processes belonging to 60024
[2025-11-26 07:39:22] 2025-11-26 15:38:36,492 | INFO     | did not find any defunct processes belonging to 60024
[2025-11-26 07:39:22] 2025-11-26 15:38:36,494 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:39:22] 2025-11-26 15:38:36,494 | INFO     | ready for new job
[2025-11-26 07:39:22] 2025-11-26 15:38:36,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:39:22] 2025-11-26 15:38:36,502 | INFO     | ***************************************
[2025-11-26 07:39:22] 2025-11-26 15:38:36,502 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:39:22] 2025-11-26 15:38:36,502 | INFO     | ***************************************
[2025-11-26 07:39:22] 2025-11-26 15:38:36,502 | INFO     | 
[2025-11-26 07:39:22] 2025-11-26 15:38:36,512 | INFO     | architecture information:
[2025-11-26 07:39:22] 2025-11-26 15:38:36,516 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:39:22] 2025-11-26 15:38:36,589 | INFO     | cat /etc/os-release:
[2025-11-26 07:39:22] NAME="CentOS Linux"
[2025-11-26 07:39:22] VERSION="7 (Core)"
[2025-11-26 07:39:22] ID="centos"
[2025-11-26 07:39:22] ID_LIKE="rhel fedora"
[2025-11-26 07:39:22] VERSION_ID="7"
[2025-11-26 07:39:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:39:22] ANSI_COLOR="0;31"
[2025-11-26 07:39:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:39:22] HOME_URL="https://www.centos.org/"
[2025-11-26 07:39:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:39:22] 
[2025-11-26 07:39:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:39:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:39:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:39:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:39:22] 
[2025-11-26 07:39:22] 2025-11-26 15:38:36,590 | INFO     | ***************************************
[2025-11-26 07:39:22] 2025-11-26 15:38:37,093 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 07:39:22] 2025-11-26 15:38:37,133 | INFO     | sufficient remaining disk space (1731525083136 B)
[2025-11-26 07:39:22] 2025-11-26 15:38:37,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:39:22] 2025-11-26 15:38:37,133 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:39:22] 2025-11-26 15:38:37,134 | INFO     | update_server=False
[2025-11-26 07:39:22] 2025-11-26 15:38:37,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:39:22] 2025-11-26 15:38:37,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:39:22] 2025-11-26 15:38:37,140 | INFO     | aborting loop
[2025-11-26 07:39:22] 2025-11-26 15:38:37,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:39:22] 2025-11-26 15:38:37,448 | INFO     | all payload control threads have been joined
[2025-11-26 07:39:22] 2025-11-26 15:38:38,112 | INFO     | all data control threads have been joined
[2025-11-26 07:39:22] 2025-11-26 15:38:38,140 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,144 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,148 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,168 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,454 | INFO     | [payload] control thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,516 | INFO     | all job control threads have been joined
[2025-11-26 07:39:22] 2025-11-26 15:38:38,649 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,805 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,854 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,904 | INFO     | [job] validate thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:38,971 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:39,118 | INFO     | [data] control thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:39,126 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:39,204 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:39,522 | INFO     | [job] control thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:39,670 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:39:22] 2025-11-26 15:38:40,187 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:39:22] 2025-11-26 15:38:40,676 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:38:44,194 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:39:22] 2025-11-26 15:39:06,408 | INFO     | PID=51025 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 07:39:22] 2025-11-26 15:39:06,409 | INFO     | .. there are 28 such processes running
[2025-11-26 07:39:22] 2025-11-26 15:39:06,409 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:39:22] 2025-11-26 15:39:06,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:39:22] 2025-11-26 15:39:06,409 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:39:22] 2025-11-26 15:39:15,689 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:39:22] 2025-11-26 15:39:16,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140553052518208)>', '<ExcThread(monitor, started 140552511145728)>']
[2025-11-26 07:39:22] 2025-11-26 15:39:17,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:39:22] 2025-11-26 15:39:17,475 | INFO     | [monitor] control thread has ended
[2025-11-26 07:39:22] 2025-11-26 15:39:22,021 | INFO     | all workflow threads have been joined
[2025-11-26 07:39:22] 2025-11-26 15:39:22,021 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:39:22] 2025-11-26 15:39:22,022 | INFO     | traces error code: 0
[2025-11-26 07:39:22] 2025-11-26 15:39:22,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:39:22] 2025-11-26 15:39:22,374 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:39:22] 2025-11-26 15:39:22,394 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:39:22] 2025-11-26 15:39:22,412 [wrapper] pilotpid: 51025
[2025-11-26 07:39:22] 2025-11-26 15:39:22,426 [wrapper] Pilot exit status: 0
[2025-11-26 07:39:22] 2025-11-26 15:39:22,639 [wrapper] pandaids: 6897999089
[2025-11-26 07:39:22] 2025-11-26 15:39:22,774 [wrapper] cleanup supervisor_pilot   51031 51026
[2025-11-26 07:39:22] 2025-11-26 15:39:22,779 [wrapper] Test setup, not cleaning
[2025-11-26 07:39:22] 2025-11-26 15:39:22,782 [wrapper] apfmon messages muted
[2025-11-26 07:39:22] 2025-11-26 15:39:22,786 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:39:22] 2025-11-26 15:39:22,789 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:39:22]  *** Error codes and diagnostics ***
[2025-11-26 07:39:22]     "exeErrorCode": 65,
[2025-11-26 07:39:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 07:39:22]     "pilotErrorCode": 1305,
[2025-11-26 07:39:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 07:39:22]  *** Listing of results directory ***
[2025-11-26 07:39:22] total 406108
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc    576529 Nov 25 18:38 pilot3.tar.gz
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:41 queuedata.json
[2025-11-26 07:39:22] -rwx------. 1 boinc boinc     36292 Nov 25 18:44 runpilot2-wrapper.sh
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc       100 Nov 26 07:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:39:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 07:29 run_atlas
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc       105 Nov 26 07:29 job.xml
[2025-11-26 07:39:22] -rw-r--r--. 2 boinc boinc 411577891 Nov 26 07:29 EVNT.47483658._003153.pool.root.1
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc      6595 Nov 26 07:29 init_data.xml
[2025-11-26 07:39:22] -rw-r--r--. 2 boinc boinc    590105 Nov 26 07:29 input.tar.gz
[2025-11-26 07:39:22] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:29 start_atlas.sh
[2025-11-26 07:39:22] drwxrwx--x. 2 boinc boinc      4096 Nov 26 07:29 shared
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc         0 Nov 26 07:29 boinc_lockfile
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc      2785 Nov 26 07:29 pandaJob.out
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc    991855 Nov 26 07:30 agis_schedconf.cvmfs.json
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc   1516240 Nov 26 07:30 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:39:22] drwx------. 5 boinc boinc      4096 Nov 26 07:30 pilot3
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc       524 Nov 26 07:34 boinc_task_state.xml
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc      1016 Nov 26 07:36 memory_monitor_summary.json
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc     52786 Nov 26 07:36 log.47556173._001096.job.log.tgz.1
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc        95 Nov 26 07:38 pilot_heartbeat.json
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc     10363 Nov 26 07:38 heartbeat.json
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc        23 Nov 26 07:39 wrapper_checkpoint.txt
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc      8192 Nov 26 07:39 boinc_mmap_file
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc      4821 Nov 26 07:39 pilotlog.txt
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc    127842 Nov 26 07:39 log.47556173._001096.job.log.1
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc       186 Nov 26 07:39 output.list
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc       620 Nov 26 07:39 runtime_log
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc    204800 Nov 26 07:39 result.tar.gz
[2025-11-26 07:39:22] -rw-------. 1 boinc boinc       649 Nov 26 07:39 xgELDmnhKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjkMKDmXRcRrm.diag
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc      8636 Nov 26 07:39 runtime_log.err
[2025-11-26 07:39:22] -rw-r--r--. 1 boinc boinc     22626 Nov 26 07:39 stderr.txt
[2025-11-26 07:39:23] No HITS result produced
[2025-11-26 07:39:23]  *** Contents of shared directory: ***
[2025-11-26 07:39:23] total 402732
[2025-11-26 07:39:23] -rw-r--r--. 2 boinc boinc 411577891 Nov 26 07:29 ATLAS.root_0
[2025-11-26 07:39:23] -rw-r--r--. 2 boinc boinc    590105 Nov 26 07:29 input.tar.gz
[2025-11-26 07:39:23] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:29 start_atlas.sh
[2025-11-26 07:39:23] -rw-------. 1 boinc boinc    204800 Nov 26 07:39 result.tar.gz
07:39:24 (47187): run_atlas exited; CPU time 82.977465
07:39:24 (47187): called boinc_finish(0)

</stderr_txt>
]]>

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