Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:57:02 (144110): wrapper (7.7.26015): starting
07:57:02 (144110): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 07:57:02] Arguments: --nthreads 12
[2025-11-26 07:57:02] Threads: 12
[2025-11-26 07:57:02] Checking for CVMFS
[2025-11-26 07:57:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:57:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:57:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:57:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:57:03] 2.11.5.0 831512 28481 330368 153326 1 497 39038250 45568001 24983 130560 0 146203835 99.748 109001907 23204 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 07:57:03] CVMFS is ok
[2025-11-26 07:57:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:57:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:57:03] Further information can be found at the LHC@home message board.
[2025-11-26 07:57:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:57:03] Checking for apptainer binary...
[2025-11-26 07:57:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:57:03] Running /usr/bin/apptainer --version
[2025-11-26 07:57:03] apptainer version 1.4.1-1.el9
[2025-11-26 07:57:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:57:04] wns0042.triumf.lcg
[2025-11-26 07:57:04] apptainer works
[2025-11-26 07:57:04] Set ATHENA_PROC_NUMBER=12
[2025-11-26 07:57:04] Set ATHENA_CORE_NUMBER=12
[2025-11-26 07:57:04] Starting ATLAS job with PandaID=6897999812
[2025-11-26 07:57:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:02:36]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 08:02:36] 2025-11-26 16:01:43,647 | WARNING  | wrong length of table data, x=[1764172696.0, 1764172757.0], y=[1389.0, 551180.0] (must be same and length>=4)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | could have reported an average CPU frequency of 1401 MHz (4 samples)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | ..............................
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . Timing measurements:
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . get job = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . initial setup = 3 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . payload setup = 8 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . stage-in = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . payload execution = 86 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . stage-out = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . log creation = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | ..............................
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999812/pilotlog.txt
[2025-11-26 08:02:36] 2025-11-26 16:01:43,664 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 08:02:36] - Log from pilotlog.txt -
[2025-11-26 08:02:36] 2025-11-26 16:01:43,645 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897999812/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | INFO     | extracted standard info from prmon json
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 08:02:36] 2025-11-26 16:01:43,647 | WARNING  | wrong length of table data, x=[1764172696.0, 1764172757.0], y=[1389.0, 551180.0] (must be same and length>=4)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | could have reported an average CPU frequency of 1401 MHz (4 samples)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | ..............................
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . Timing measurements:
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . get job = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . initial setup = 3 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . payload setup = 8 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . stage-in = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . payload execution = 86 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . stage-out = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . log creation = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | ..............................
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999812/pilotlog.txt
[2025-11-26 08:02:36] 2025-11-26 16:01:43,665 | WARNING  | 
[2025-11-26 08:02:36] [begin log extracts]
[2025-11-26 08:02:36] - Log from pilotlog.txt -
[2025-11-26 08:02:36] 2025-11-26 16:01:43,645 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897999812/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | INFO     | extracted standard info from prmon json
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 08:02:36] 2025-11-26 16:01:43,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 08:02:36] 2025-11-26 16:01:43,647 | WARNING  | wrong length of table data, x=[1764172696.0, 1764172757.0], y=[1389.0, 551180.0] (must be same and length>=4)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | could have reported an average CPU frequency of 1401 MHz (4 samples)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | ..............................
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . Timing measurements:
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . get job = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . initial setup = 3 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,648 | INFO     | . payload setup = 8 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . stage-in = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . payload execution = 86 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . stage-out = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | . log creation = 0 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | ..............................
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 08:02:36] 2025-11-26 16:01:43,649 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999812/pilotlog.txt
[2025-11-26 08:02:36] [end log extracts]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,665 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,666 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 08:02:36] 2025-11-26 16:01:43,759 | INFO     | 
[2025-11-26 08:02:36] 2025-11-26 16:01:43,759 | INFO     | job summary report
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | --------------------------------------------------
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | PanDA job id: 6897999812
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | task id: 47556161
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 07:59:30,645 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | pilot state: failed 
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | transexitcode: 65
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | exeerrorcode: 65
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | exitcode: 65
[2025-11-26 08:02:36] 2025-11-26 16:01:43,760 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | cpuconsumptiontime: 70 s
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | nevents: 0
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | neventsw: 0
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | pid: 162263
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | pgrp: 162263
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | corecount: 12
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | event service: False
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | sizes: {0: 2284090, 1: 2284118, 2: 2284317, 3: 2284317, 14: 2284345, 16: 2284635, 24: 2284791, 98: 2310187, 99: 2314477, 102: 2314505, 224: 2314671}
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | --------------------------------------------------
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | 
[2025-11-26 08:02:36] 2025-11-26 16:01:43,761 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 08:02:36] 2025-11-26 16:01:43,782 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,783 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:02:36] 2025-11-26 16:01:43,784 | INFO     | job 6897999812 has completed (purged errors)
[2025-11-26 08:02:36] 2025-11-26 16:01:43,785 | INFO     | overall cleanup function is called
[2025-11-26 08:02:36] 2025-11-26 16:01:44,792 | INFO     | --- collectZombieJob: --- 10, [162263]
[2025-11-26 08:02:36] 2025-11-26 16:01:44,792 | INFO     | zombie collector waiting for pid 162263
[2025-11-26 08:02:36] 2025-11-26 16:01:44,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:02:36] 2025-11-26 16:01:44,793 | INFO     | collected zombie processes
[2025-11-26 08:02:36] 2025-11-26 16:01:44,793 | INFO     | will attempt to kill all subprocesses of pid=162263
[2025-11-26 08:02:36] 2025-11-26 16:01:45,109 | INFO     | process IDs to be killed: [162263] (in reverse order)
[2025-11-26 08:02:36] 2025-11-26 16:01:45,217 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:02:36] 2025-11-26 16:01:45,218 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:02:36] 2025-11-26 16:01:45,230 | INFO     | did not find any defunct processes belonging to 162263
[2025-11-26 08:02:36] 2025-11-26 16:01:45,242 | INFO     | did not find any defunct processes belonging to 162263
[2025-11-26 08:02:36] 2025-11-26 16:01:45,243 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:02:36] 2025-11-26 16:01:45,243 | INFO     | ready for new job
[2025-11-26 08:02:36] 2025-11-26 16:01:45,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:02:36] 2025-11-26 16:01:45,245 | INFO     | ***************************************
[2025-11-26 08:02:36] 2025-11-26 16:01:45,245 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:02:36] 2025-11-26 16:01:45,245 | INFO     | ***************************************
[2025-11-26 08:02:36] 2025-11-26 16:01:45,246 | INFO     | 
[2025-11-26 08:02:36] 2025-11-26 16:01:45,249 | INFO     | architecture information:
[2025-11-26 08:02:36] 2025-11-26 16:01:45,250 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:02:36] 2025-11-26 16:01:45,263 | INFO     | cat /etc/os-release:
[2025-11-26 08:02:36] NAME="CentOS Linux"
[2025-11-26 08:02:36] VERSION="7 (Core)"
[2025-11-26 08:02:36] ID="centos"
[2025-11-26 08:02:36] ID_LIKE="rhel fedora"
[2025-11-26 08:02:36] VERSION_ID="7"
[2025-11-26 08:02:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:02:36] ANSI_COLOR="0;31"
[2025-11-26 08:02:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:02:36] HOME_URL="https://www.centos.org/"
[2025-11-26 08:02:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:02:36] 
[2025-11-26 08:02:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:02:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:02:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:02:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:02:36] 
[2025-11-26 08:02:36] 2025-11-26 16:01:45,264 | INFO     | ***************************************
[2025-11-26 08:02:36] 2025-11-26 16:01:45,766 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 08:02:36] 2025-11-26 16:01:45,783 | INFO     | sufficient remaining disk space (1750265233408 B)
[2025-11-26 08:02:36] 2025-11-26 16:01:45,783 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:02:36] 2025-11-26 16:01:45,783 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:02:36] 2025-11-26 16:01:45,784 | INFO     | update_server=False
[2025-11-26 08:02:36] 2025-11-26 16:01:45,784 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:02:36] 2025-11-26 16:01:45,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:02:36] 2025-11-26 16:01:45,784 | INFO     | aborting loop
[2025-11-26 08:02:36] 2025-11-26 16:01:45,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:02:36] 2025-11-26 16:01:46,100 | INFO     | all data control threads have been joined
[2025-11-26 08:02:36] 2025-11-26 16:01:46,788 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:46,790 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:46,997 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:47,022 | INFO     | all payload control threads have been joined
[2025-11-26 08:02:36] 2025-11-26 16:01:47,106 | INFO     | [data] control thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:47,196 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:47,262 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:02:36] 2025-11-26 16:01:47,282 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:47,407 | INFO     | all job control threads have been joined
[2025-11-26 08:02:36] 2025-11-26 16:01:47,559 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:47,568 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:47,705 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:47,961 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:48,027 | INFO     | [payload] control thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:48,263 | INFO     | [job] validate thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:48,412 | INFO     | [job] control thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:48,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:02:36] 2025-11-26 16:01:49,267 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:49,790 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:01:49,792 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:02:36] 2025-11-26 16:02:15,432 | INFO     | PID=147851 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 08:02:36] 2025-11-26 16:02:15,432 | INFO     | .. there are 28 such processes running
[2025-11-26 08:02:36] 2025-11-26 16:02:15,432 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:02:36] 2025-11-26 16:02:15,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:02:36] 2025-11-26 16:02:15,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:02:36] 2025-11-26 16:02:29,542 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:02:36] 2025-11-26 16:02:31,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978856212288)>', '<ExcThread(monitor, started 139978319312640)>']
[2025-11-26 08:02:36] 2025-11-26 16:02:31,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:02:36] 2025-11-26 16:02:31,521 | INFO     | [monitor] control thread has ended
[2025-11-26 08:02:36] 2025-11-26 16:02:36,535 | INFO     | all workflow threads have been joined
[2025-11-26 08:02:36] 2025-11-26 16:02:36,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:02:36] 2025-11-26 16:02:36,536 | INFO     | traces error code: 0
[2025-11-26 08:02:36] 2025-11-26 16:02:36,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:02:36] 2025-11-26 16:02:36,711 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:02:36] 2025-11-26 16:02:36,715 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:02:36] 2025-11-26 16:02:36,718 [wrapper] pilotpid: 147851
[2025-11-26 08:02:36] 2025-11-26 16:02:36,721 [wrapper] Pilot exit status: 0
[2025-11-26 08:02:36] 2025-11-26 16:02:36,731 [wrapper] pandaids: 6897999812
[2025-11-26 08:02:36] 2025-11-26 16:02:36,801 [wrapper] cleanup supervisor_pilot  147860 147852
[2025-11-26 08:02:36] 2025-11-26 16:02:36,804 [wrapper] Test setup, not cleaning
[2025-11-26 08:02:36] 2025-11-26 16:02:36,807 [wrapper] apfmon messages muted
[2025-11-26 08:02:36] 2025-11-26 16:02:36,810 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:02:36] 2025-11-26 16:02:36,813 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:02:36]  *** Error codes and diagnostics ***
[2025-11-26 08:02:36]     "exeErrorCode": 65,
[2025-11-26 08:02:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 08:02:36]     "pilotErrorCode": 1305,
[2025-11-26 08:02:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 08:02:36]  *** Listing of results directory ***
[2025-11-26 08:02:36] total 404848
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc    576529 Nov 25 18:38 pilot3.tar.gz
[2025-11-26 08:02:36] -rwx------. 1 boinc boinc     36292 Nov 25 18:41 runpilot2-wrapper.sh
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:41 queuedata.json
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc       100 Nov 26 07:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:02:36] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 07:57 run_atlas
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc       105 Nov 26 07:57 job.xml
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc      6595 Nov 26 07:57 init_data.xml
[2025-11-26 08:02:36] -rw-r--r--. 2 boinc boinc 410364080 Nov 26 07:57 EVNT.47483658._002385.pool.root.1
[2025-11-26 08:02:36] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:57 start_atlas.sh
[2025-11-26 08:02:36] drwxrwx--x. 2 boinc boinc      4096 Nov 26 07:57 shared
[2025-11-26 08:02:36] -rw-r--r--. 2 boinc boinc    590100 Nov 26 07:57 input.tar.gz
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc         0 Nov 26 07:57 boinc_lockfile
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc      2785 Nov 26 07:57 pandaJob.out
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc    991855 Nov 26 07:57 agis_schedconf.cvmfs.json
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc   1516240 Nov 26 07:57 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:02:36] drwx------. 5 boinc boinc      4096 Nov 26 07:57 pilot3
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc       525 Nov 26 07:59 boinc_task_state.xml
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc       995 Nov 26 07:59 memory_monitor_summary.json
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc     49029 Nov 26 07:59 log.47556161._003680.job.log.tgz.1
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc        95 Nov 26 08:01 pilot_heartbeat.json
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc     10337 Nov 26 08:01 heartbeat.json
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc        23 Nov 26 08:02 wrapper_checkpoint.txt
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc      8192 Nov 26 08:02 boinc_mmap_file
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc      4822 Nov 26 08:02 pilotlog.txt
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc     98123 Nov 26 08:02 log.47556161._003680.job.log.1
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc       186 Nov 26 08:02 output.list
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc       620 Nov 26 08:02 runtime_log
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc    163840 Nov 26 08:02 result.tar.gz
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc       645 Nov 26 08:02 w3nKDmreKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKnJKDm1wecIn.diag
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc      8636 Nov 26 08:02 runtime_log.err
[2025-11-26 08:02:36] -rw-r--r--. 1 boinc boinc     22504 Nov 26 08:02 stderr.txt
[2025-11-26 08:02:36] No HITS result produced
[2025-11-26 08:02:36]  *** Contents of shared directory: ***
[2025-11-26 08:02:36] total 401508
[2025-11-26 08:02:36] -rw-r--r--. 2 boinc boinc 410364080 Nov 26 07:57 ATLAS.root_0
[2025-11-26 08:02:36] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:57 start_atlas.sh
[2025-11-26 08:02:36] -rw-r--r--. 2 boinc boinc    590100 Nov 26 07:57 input.tar.gz
[2025-11-26 08:02:36] -rw-------. 1 boinc boinc    163840 Nov 26 08:02 result.tar.gz
08:02:38 (144110): run_atlas exited; CPU time 67.968441
08:02:38 (144110): called boinc_finish(0)

</stderr_txt>
]]>

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