Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:26:46 (4148182): wrapper (7.7.26015): starting
07:26:46 (4148182): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:26:46] Arguments: --nthreads 8
[2025-11-26 07:26:46] Threads: 8
[2025-11-26 07:26:46] Checking for CVMFS
[2025-11-26 07:26:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:26:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:26:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:26:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:26:47] 2.11.3.0 1855 94898 135192 153326 3 149 25941143 45568000 23741 130560 0 621116429 99.844 291525160 19950 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 07:26:47] CVMFS is ok
[2025-11-26 07:26:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:26:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:26:47] Further information can be found at the LHC@home message board.
[2025-11-26 07:26:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:26:47] Checking for apptainer binary...
[2025-11-26 07:26:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:26:47] Running /usr/bin/apptainer --version
[2025-11-26 07:26:47] apptainer version 1.4.1-1.el9
[2025-11-26 07:26:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:26:47] wns0009.triumf.lcg
[2025-11-26 07:26:47] apptainer works
[2025-11-26 07:26:47] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:26:47] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:26:47] Starting ATLAS job with PandaID=6897999075
[2025-11-26 07:26:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:35:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:35:12] 2025-11-26 15:34:12,143 | WARNING  | wrong length of table data, x=[1764170862.0, 1764170923.0, 1764170984.0, 1764171045.0, 1764171106.0], y=[1097.0, 611648.0, 862017.0, 469592.0, 742224.0] (must be s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,144 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | ..............................
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | . Timing measurements:
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | . get job = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . initial setup = 2 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . payload setup = 10 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . stage-in = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . payload execution = 272 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . stage-out = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . log creation = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | ..............................
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999075/pilotlog.txt
[2025-11-26 07:35:12] 2025-11-26 15:34:12,197 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 07:35:12] - Log from pilotlog.txt -
[2025-11-26 07:35:12] 2025-11-26 15:34:12,141 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897999075/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | INFO     | extracted standard info from prmon json
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 07:35:12] 2025-11-26 15:34:12,143 | WARNING  | wrong length of table data, x=[1764170862.0, 1764170923.0, 1764170984.0, 1764171045.0, 1764171106.0], y=[1097.0, 611648.0, 862017.0, 469592.0, 742224.0] (must be s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,144 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | ..............................
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | . Timing measurements:
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | . get job = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . initial setup = 2 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . payload setup = 10 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . stage-in = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . payload execution = 272 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . stage-out = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . log creation = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | ..............................
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999075/pilotlog.txt
[2025-11-26 07:35:12] 2025-11-26 15:34:12,198 | WARNING  | 
[2025-11-26 07:35:12] [begin log extracts]
[2025-11-26 07:35:12] - Log from pilotlog.txt -
[2025-11-26 07:35:12] 2025-11-26 15:34:12,141 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897999075/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | INFO     | extracted standard info from prmon json
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 07:35:12] 2025-11-26 15:34:12,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 07:35:12] 2025-11-26 15:34:12,143 | WARNING  | wrong length of table data, x=[1764170862.0, 1764170923.0, 1764170984.0, 1764171045.0, 1764171106.0], y=[1097.0, 611648.0, 862017.0, 469592.0, 742224.0] (must be s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,144 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | ..............................
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | . Timing measurements:
[2025-11-26 07:35:12] 2025-11-26 15:34:12,163 | INFO     | . get job = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . initial setup = 2 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . payload setup = 10 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . stage-in = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . payload execution = 272 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . stage-out = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | . log creation = 0 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | ..............................
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 07:35:12] 2025-11-26 15:34:12,164 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897999075/pilotlog.txt
[2025-11-26 07:35:12] [end log extracts]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,198 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,199 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 07:35:12] 2025-11-26 15:34:12,619 | INFO     | time since job start (428s) is within the limit (172800.0s)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,829 | INFO     | 
[2025-11-26 07:35:12] 2025-11-26 15:34:12,829 | INFO     | job summary report
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | --------------------------------------------------
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | PanDA job id: 6897999075
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | task id: 47556161
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 07:32:00,798 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | pilot state: failed 
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | transexitcode: 65
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | exeerrorcode: 65
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | exitcode: 65
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 07:35:12] 2025-11-26 15:34:12,830 | INFO     | cpuconsumptiontime: 55 s
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | nevents: 0
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | neventsw: 0
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | pid: 4158859
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | pgrp: 4158859
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | corecount: 8
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | event service: False
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | sizes: {0: 2284261, 7: 2284523, 11: 2284551, 287: 2310023, 288: 2310027, 289: 2314557, 411: 2314695}
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | --------------------------------------------------
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | 
[2025-11-26 07:35:12] 2025-11-26 15:34:12,831 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 07:35:12] 2025-11-26 15:34:12,850 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,851 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,852 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,852 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,852 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,852 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:35:12] 2025-11-26 15:34:12,852 | INFO     | job 6897999075 has completed (purged errors)
[2025-11-26 07:35:12] 2025-11-26 15:34:12,853 | INFO     | overall cleanup function is called
[2025-11-26 07:35:12] 2025-11-26 15:34:13,860 | INFO     | --- collectZombieJob: --- 10, [4158859]
[2025-11-26 07:35:12] 2025-11-26 15:34:13,860 | INFO     | zombie collector waiting for pid 4158859
[2025-11-26 07:35:12] 2025-11-26 15:34:13,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:35:12] 2025-11-26 15:34:13,861 | INFO     | collected zombie processes
[2025-11-26 07:35:12] 2025-11-26 15:34:13,861 | INFO     | will attempt to kill all subprocesses of pid=4158859
[2025-11-26 07:35:12] 2025-11-26 15:34:14,287 | INFO     | process IDs to be killed: [4158859] (in reverse order)
[2025-11-26 07:35:12] 2025-11-26 15:34:14,678 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:35:12] 2025-11-26 15:34:14,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:35:12] 2025-11-26 15:34:14,730 | INFO     | did not find any defunct processes belonging to 4158859
[2025-11-26 07:35:12] 2025-11-26 15:34:14,791 | INFO     | did not find any defunct processes belonging to 4158859
[2025-11-26 07:35:12] 2025-11-26 15:34:14,792 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:35:12] 2025-11-26 15:34:14,792 | INFO     | ready for new job
[2025-11-26 07:35:12] 2025-11-26 15:34:14,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:35:12] 2025-11-26 15:34:14,830 | INFO     | ***************************************
[2025-11-26 07:35:12] 2025-11-26 15:34:14,830 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:35:12] 2025-11-26 15:34:14,830 | INFO     | ***************************************
[2025-11-26 07:35:12] 2025-11-26 15:34:14,831 | INFO     | 
[2025-11-26 07:35:12] 2025-11-26 15:34:14,832 | INFO     | architecture information:
[2025-11-26 07:35:12] 2025-11-26 15:34:14,872 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:35:12] 2025-11-26 15:34:14,932 | INFO     | cat /etc/os-release:
[2025-11-26 07:35:12] NAME="CentOS Linux"
[2025-11-26 07:35:12] VERSION="7 (Core)"
[2025-11-26 07:35:12] ID="centos"
[2025-11-26 07:35:12] ID_LIKE="rhel fedora"
[2025-11-26 07:35:12] VERSION_ID="7"
[2025-11-26 07:35:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:35:12] ANSI_COLOR="0;31"
[2025-11-26 07:35:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:35:12] HOME_URL="https://www.centos.org/"
[2025-11-26 07:35:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:35:12] 
[2025-11-26 07:35:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:35:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:35:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:35:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:35:12] 
[2025-11-26 07:35:12] 2025-11-26 15:34:14,933 | INFO     | ***************************************
[2025-11-26 07:35:12] 2025-11-26 15:34:15,436 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 07:35:12] 2025-11-26 15:34:15,452 | INFO     | sufficient remaining disk space (736621494272 B)
[2025-11-26 07:35:12] 2025-11-26 15:34:15,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:35:12] 2025-11-26 15:34:15,453 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:35:12] 2025-11-26 15:34:15,453 | INFO     | update_server=False
[2025-11-26 07:35:12] 2025-11-26 15:34:15,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:35:12] 2025-11-26 15:34:15,454 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:35:12] 2025-11-26 15:34:15,454 | INFO     | aborting loop
[2025-11-26 07:35:12] 2025-11-26 15:34:15,694 | INFO     | all data control threads have been joined
[2025-11-26 07:35:12] 2025-11-26 15:34:16,012 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:35:12] 2025-11-26 15:34:16,460 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:16,461 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:16,534 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:16,601 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:16,681 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:16,700 | INFO     | [data] control thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:16,867 | INFO     | [job] validate thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:16,917 | INFO     | all job control threads have been joined
[2025-11-26 07:35:12] 2025-11-26 15:34:16,958 | INFO     | all payload control threads have been joined
[2025-11-26 07:35:12] 2025-11-26 15:34:17,100 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:17,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:35:12] 2025-11-26 15:34:17,546 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:17,565 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:17,608 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:17,918 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:35:12] 2025-11-26 15:34:17,922 | INFO     | [job] control thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:17,965 | INFO     | [payload] control thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:18,017 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:18,533 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:21,929 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:35:12] 2025-11-26 15:34:46,544 | INFO     | PID=4151986 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 07:35:12] 2025-11-26 15:34:46,544 | INFO     | .. there are 33 such processes running
[2025-11-26 07:35:12] 2025-11-26 15:34:46,544 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:35:12] 2025-11-26 15:34:46,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:35:12] 2025-11-26 15:34:46,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:35:12] 2025-11-26 15:35:04,830 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:35:12] 2025-11-26 15:35:06,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140013779023680)>', '<ExcThread(monitor, started 140013249492736)>']
[2025-11-26 07:35:12] 2025-11-26 15:35:06,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:35:12] 2025-11-26 15:35:06,678 | INFO     | [monitor] control thread has ended
[2025-11-26 07:35:12] 2025-11-26 15:35:11,439 | INFO     | all workflow threads have been joined
[2025-11-26 07:35:12] 2025-11-26 15:35:11,439 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:35:12] 2025-11-26 15:35:11,440 | INFO     | traces error code: 0
[2025-11-26 07:35:12] 2025-11-26 15:35:11,440 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:35:12] 2025-11-26 15:35:11,749 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:35:12] 2025-11-26 15:35:11,751 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:35:12] 2025-11-26 15:35:11,769 [wrapper] pilotpid: 4151986
[2025-11-26 07:35:12] 2025-11-26 15:35:11,771 [wrapper] Pilot exit status: 0
[2025-11-26 07:35:12] 2025-11-26 15:35:11,843 [wrapper] pandaids: 6897999075
[2025-11-26 07:35:12] 2025-11-26 15:35:11,887 [wrapper] cleanup supervisor_pilot 4151993 4151987
[2025-11-26 07:35:12] 2025-11-26 15:35:11,890 [wrapper] Test setup, not cleaning
[2025-11-26 07:35:12] 2025-11-26 15:35:11,892 [wrapper] apfmon messages muted
[2025-11-26 07:35:12] 2025-11-26 15:35:11,893 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:35:12] 2025-11-26 15:35:11,903 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:35:12]  *** Error codes and diagnostics ***
[2025-11-26 07:35:12]     "exeErrorCode": 65,
[2025-11-26 07:35:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 07:35:12]     "pilotErrorCode": 1305,
[2025-11-26 07:35:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 07:35:12]  *** Listing of results directory ***
[2025-11-26 07:35:12] total 404908
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc    576529 Nov 25 18:38 pilot3.tar.gz
[2025-11-26 07:35:12] -rwx------. 1 boinc boinc     36292 Nov 25 18:41 runpilot2-wrapper.sh
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc      5112 Nov 25 18:41 queuedata.json
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc       100 Nov 26 07:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:35:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 07:26 run_atlas
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc       105 Nov 26 07:26 job.xml
[2025-11-26 07:35:12] -rw-r--r--. 2 boinc boinc 410364080 Nov 26 07:26 EVNT.47483658._002385.pool.root.1
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc      6443 Nov 26 07:26 init_data.xml
[2025-11-26 07:35:12] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:26 start_atlas.sh
[2025-11-26 07:35:12] drwxrwx--x. 2 boinc boinc      4096 Nov 26 07:26 shared
[2025-11-26 07:35:12] -rw-r--r--. 2 boinc boinc    590105 Nov 26 07:26 input.tar.gz
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc         0 Nov 26 07:26 boinc_lockfile
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc      2785 Nov 26 07:26 pandaJob.out
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc    991855 Nov 26 07:27 agis_schedconf.cvmfs.json
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc   1516240 Nov 26 07:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:35:12] drwx------. 5 boinc boinc      4096 Nov 26 07:27 pilot3
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc       524 Nov 26 07:32 boinc_task_state.xml
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc      1001 Nov 26 07:32 memory_monitor_summary.json
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc     51763 Nov 26 07:32 log.47556161._003674.job.log.tgz.1
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc        95 Nov 26 07:34 pilot_heartbeat.json
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc     10332 Nov 26 07:34 heartbeat.json
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc      8192 Nov 26 07:35 boinc_mmap_file
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc        23 Nov 26 07:35 wrapper_checkpoint.txt
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc      4822 Nov 26 07:35 pilotlog.txt
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc    119580 Nov 26 07:35 log.47556161._003674.job.log.1
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc       186 Nov 26 07:35 output.list
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc       620 Nov 26 07:35 runtime_log
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc    194560 Nov 26 07:35 result.tar.gz
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc      8634 Nov 26 07:35 runtime_log.err
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc       647 Nov 26 07:35 a1cKDmreKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEnJKDmQfDLBo.diag
[2025-11-26 07:35:12] -rw-r--r--. 1 boinc boinc     22645 Nov 26 07:35 stderr.txt
[2025-11-26 07:35:12] No HITS result produced
[2025-11-26 07:35:12]  *** Contents of shared directory: ***
[2025-11-26 07:35:12] total 401540
[2025-11-26 07:35:12] -rw-r--r--. 2 boinc boinc 410364080 Nov 26 07:26 ATLAS.root_0
[2025-11-26 07:35:12] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:26 start_atlas.sh
[2025-11-26 07:35:12] -rw-r--r--. 2 boinc boinc    590105 Nov 26 07:26 input.tar.gz
[2025-11-26 07:35:12] -rw-------. 1 boinc boinc    194560 Nov 26 07:35 result.tar.gz
07:35:14 (4148182): run_atlas exited; CPU time 58.685196
07:35:14 (4148182): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN